Chy11G199110 (gene) Cucumber (hystrix) v1

Overview


Name	Chy11G199110
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Voltage-dependent T-type calcium channel subunit alpha-1I (Ca(V)3.3) like
Location	chrH11: 19539055 .. 19539282 (+)
RNA-Seq Expression	Chy11G199110
Synteny	Chy11G199110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGCGGAGACTGCGCTGGCCGCCATTCTCGGAAGATTGGGGCGTCATTGCTATGCGGTTTTGTGTTTGGGAGTTCTTCTTCTCACTGTTGCTGTAGTTCACTACGTTGGCGACGGAGAGCCGACCGATCCACGCGACCGGACCAAGCGCCGTCTTCGGCCCTTGCACGGCTCATCAATTCGCGGCGAAGATGGCGGCCGTCAGTTGCCTGCGGTGGTGAATTGA

mRNA sequence

ATGGAGGCGGAGACTGCGCTGGCCGCCATTCTCGGAAGATTGGGGCGTCATTGCTATGCGGTTTTGTGTTTGGGAGTTCTTCTTCTCACTGTTGCTGTAGTTCACTACGTTGGCGACGGAGAGCCGACCGATCCACGCGACCGGACCAAGCGCCGTCTTCGGCCCTTGCACGGCTCATCAATTCGCGGCGAAGATGGCGGCCGTCAGTTGCCTGCGGTGGTGAATTGA

Coding sequence (CDS)

ATGGAGGCGGAGACTGCGCTGGCCGCCATTCTCGGAAGATTGGGGCGTCATTGCTATGCGGTTTTGTGTTTGGGAGTTCTTCTTCTCACTGTTGCTGTAGTTCACTACGTTGGCGACGGAGAGCCGACCGATCCACGCGACCGGACCAAGCGCCGTCTTCGGCCCTTGCACGGCTCATCAATTCGCGGCGAAGATGGCGGCCGTCAGTTGCCTGCGGTGGTGAATTGA

Protein sequence

MEAETALAAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRDRTKRRLRPLHGSSIRGEDGGRQLPAVVN*

Homology

[Close]

BLAST of Chy11G199110 vs. ExPASy TrEMBL
Match: A0A0A0KC65 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G293180 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.1e-31
Identity = 71/75 (94.67%), Postives = 72/75 (96.00%), Query Frame = 0


Query: 1  MEAETALAAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRDRTKRRLRPLHGSS 60
          MEAETALAAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPR+RTKRRLRPLHGSS
Sbjct: 1  MEAETALAAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERTKRRLRPLHGSS 60

Query: 61 IRGEDGGRQLPAVVN 76
          I GED  RQLPAVVN
Sbjct: 61 ILGEDAARQLPAVVN 75

[Close]

BLAST of Chy11G199110 vs. ExPASy TrEMBL
Match: A0A7N2KN99 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 6.3e-11
Identity = 35/51 (68.63%), Postives = 41/51 (80.39%), Query Frame = 0


Query: 10 ILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRDRTKRRLRPLHGSS 61
          +LG+L RHCYAVLCLGVLLL+V + HYV   EP+DPR+RT RRLR  HG S
Sbjct: 7  LLGKLVRHCYAVLCLGVLLLSVTIAHYVPAAEPSDPRERTIRRLRASHGRS 57

[Close]

BLAST of Chy11G199110 vs. ExPASy TrEMBL
Match: A0A5E4FUM3 (Uncharacterized protein OS=Prunus dulcis OX=3755 GN=ALMOND_2B035406 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 5.4e-10
Identity = 32/53 (60.38%), Postives = 42/53 (79.25%), Query Frame = 0


Query: 10 ILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRDRTKRRLRPLHGSSIR 63
          +LG+LGR CYAVLCLGV++L V +V+YVG  E  DP +RT+RRLR +HG  +R
Sbjct: 7  LLGKLGRQCYAVLCLGVIILAVTLVNYVGAEEQKDPMERTRRRLRAIHGPPLR 59

[Close]

BLAST of Chy11G199110 vs. ExPASy TrEMBL
Match: A0A660KR43 (MLO-like protein OS=Carpinus fangiana OX=176857 GN=MLO PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 9.2e-10
Identity = 33/53 (62.26%), Postives = 39/53 (73.58%), Query Frame = 0


Query: 10  ILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRDRTKRRLRPLHGSSIR 63
           +LG+LGR CYAVLCLGVLL++V + H V   EPTDPR+R  RRLR L G   R
Sbjct: 572 LLGKLGRQCYAVLCLGVLLVSVTIAHCVSAAEPTDPRERAGRRLRDLRGGPFR 624

[Close]

BLAST of Chy11G199110 vs. ExPASy TrEMBL
Match: A0A6J5XGV1 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS35900 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.6e-09
Identity = 32/53 (60.38%), Postives = 40/53 (75.47%), Query Frame = 0


Query: 10 ILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRDRTKRRLRPLHGSSIR 63
          +LG+LGR CYAVLCLGV+LL V + +YVG  E  DP +RT+RRLR +HG   R
Sbjct: 7  LLGKLGRQCYAVLCLGVILLAVTLANYVGAEEQEDPMERTRRRLRAIHGPPFR 59

[Close]

BLAST of Chy11G199110 vs. NCBI nr
Match: KAE8647058.1 (hypothetical protein Csa_023003, partial [Cucumis sativus])

HSP 1 Score: 129 bits (324), Expect = 2.38e-37
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1  MEAETALAAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRDRTKRRLRPLHGSS 60
          MEAETALAAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPR+RTKRRLRPLHGSS
Sbjct: 1  MEAETALAAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERTKRRLRPLHGSS 60

Query: 61 IRGED 65
          I GED
Sbjct: 61 ILGED 65

[Close]

BLAST of Chy11G199110 vs. NCBI nr
Match: KAG7010620.1 (Protein transport protein Sec61 subunit beta, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 112 bits (280), Expect = 1.96e-29
Identity = 57/75 (76.00%), Postives = 60/75 (80.00%), Query Frame = 0


Query: 1  MEAETALAAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRDRTKRRLRPLHGSS 60
          ME ETA+ AILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPR+R+KRRLR LH   
Sbjct: 1  MEMETAVGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERSKRRLRTLH--- 60

Query: 61 IRGEDGGRQLPAVVN 75
               GGR  P V N
Sbjct: 61 -----GGRDPPPVFN 67

[Close]

BLAST of Chy11G199110 vs. NCBI nr
Match: XP_023512260.1 (syntaxin-71-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 112 bits (280), Expect = 1.07e-28
Identity = 57/75 (76.00%), Postives = 60/75 (80.00%), Query Frame = 0


Query: 1  MEAETALAAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRDRTKRRLRPLHGSS 60
          ME ETA+ AILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPR+R+KRRLR LH   
Sbjct: 1  MEMETAVGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERSKRRLRTLH--- 60

Query: 61 IRGEDGGRQLPAVVN 75
               GGR  P V N
Sbjct: 61 -----GGRDPPPVFN 67

[Close]

BLAST of Chy11G199110 vs. NCBI nr
Match: KAG6570773.1 (Protein transport protein Sec61 subunit beta, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 109 bits (273), Expect = 5.66e-28
Identity = 52/58 (89.66%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 1  MEAETALAAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRDRTKRRLRPLHG 58
          ME ETA+ AILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPR+R+KRRLR LHG
Sbjct: 1  MEMETAVGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERSKRRLRTLHG 58

[Close]

BLAST of Chy11G199110 vs. NCBI nr
Match: VVA31225.1 (Hypothetical predicted protein [Prunus dulcis])

HSP 1 Score: 72.8 bits (177), Expect = 6.23e-15
Identity = 32/53 (60.38%), Postives = 42/53 (79.25%), Query Frame = 0


Query: 10 ILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRDRTKRRLRPLHGSSIR 62
          +LG+LGR CYAVLCLGV++L V +V+YVG  E  DP +RT+RRLR +HG  +R
Sbjct: 7  LLGKLGRQCYAVLCLGVIILAVTLVNYVGAEEQKDPMERTRRRLRAIHGPPLR 59

The following BLAST results are available for this feature:

BLAST of Chy11G199110 vs.


Match Name	E-value	Identity	Description

BLAST of Chy11G199110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KC65	1.1e-31	94.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G293180 PE=4 SV=1	[more]
A0A7N2KN99	6.3e-11	68.63	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A5E4FUM3	5.4e-10	60.38	Uncharacterized protein OS=Prunus dulcis OX=3755 GN=ALMOND_2B035406 PE=4 SV=1	[more]
A0A660KR43	9.2e-10	62.26	MLO-like protein OS=Carpinus fangiana OX=176857 GN=MLO PE=3 SV=1	[more]
A0A6J5XGV1	1.6e-09	60.38	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS35900 PE=...	[more]

BLAST of Chy11G199110 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647058.1	2.38e-37	96.92	hypothetical protein Csa_023003, partial [Cucumis sativus]	[more]
KAG7010620.1	1.96e-29	76.00	Protein transport protein Sec61 subunit beta, partial [Cucurbita argyrosperma su...	[more]
XP_023512260.1	1.07e-28	76.00	syntaxin-71-like [Cucurbita pepo subsp. pepo]	[more]
KAG6570773.1	5.66e-28	89.66	Protein transport protein Sec61 subunit beta, partial [Cucurbita argyrosperma su...	[more]
VVA31225.1	6.23e-15	60.38	Hypothetical predicted protein [Prunus dulcis]	[more]

BLAST of Chy11G199110 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy11G199110.1	Chy11G199110.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045490	pectin catabolic process
biological_process	GO:0050896	response to stimulus
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0030599	pectinesterase activity