Chy10G178420.1 (mRNA) Cucumber (hystrix) v1

Overview


Name	Chy10G178420.1
Type	mRNA
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Transcription termination factor MTERF5
Location	chrH10: 13016204 .. 13017312 (+)
Sequence length	858
RNA-Seq Expression	Chy10G178420.1
Synteny	Chy10G178420.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCAAAATTTCCTCCACTTTTCTTCTACATTTCTTCCAAAAACGTTTTCTCAATACCATTTCTACTTCTACATTGCCTTTGCCCTCTGTTTCTACCCTCGAGTTCCTCAAAAATTCATGTCGCCTTTCTTCAGAATCTCCTTCTTCCGTCGCCGGTCGAAAGTTCCAATTCGATGAAAAAAACATCCAGCAGTACAAAGCCATTATCGGTTTCTTGAAGTCTCATGGATTCGAGGATTCAGAGATCGCCAAGTTGGTCTCGAAGCGACCTTTCATCCTTCAATCCAGAGTATCCAACAATCTGAAGCCTAAATTCGAGTTCCCCCAGGAAATCGGGTTCGTCGGTCCTTTACTTCTTAAGCTATTCCTATCAAACCCTTGGATTCTTTACAGGAACTTAGATTCTCAGTTAAAACCATTGTTTTTTTTCCTAAAGGAAATGCTTGGATCGGATGAACAAGTAACAACTGCTATTCGTCGTTCTCCGTGGCTTCTAACTTCTGATTTTAACGGTATTTTAAAATCTAACTTTGATGTTTTAGCCAGTGAAGGAGTACCTTCTAGCAATATAGCAAAAATGATTGCATATAATTCTAGAACTATAATGCAAACGGTTGATAGAATGATTCAAGTAGTGAAAATGGTTAAAGAATTGGGCATTGAACCAAAGTCTGCTAGGTTTCTTCATGCACTTAGAGTAAGGGGTTCAATGACTGATTCAACCTGGAAGAAGAAAATAAATGTTTTGAAGAGTTTAGGATGATCTGAGAATAAGATACTTACACTATTTAAGAGACAGCCAATTTGTTTAGCTCGTTCAGAGGAGGCATTAAGGGATGTTTCAACACTGCAAAGTTGGATCCAGAAACTGTAATTTTTTACCCTAAGTTCTTCACGTAATCAGTCGACAAGCTCCGGCCAAGTTGCAAAGTTCTTGAGGTTTTGAAGGTAAAAAATCTTCTTAAGGACAAAAAGATTGCTCGGGCGCTAACACTAGTGGAGAGTCAATTTGTGGAGAATTATGTTCTTAAGCATTTGGATGAAATACCAAAGCTAATGGACATATACCGGGGCAATGTCACAGCCGAAACCAGTTCTGTTCTATAG

mRNA sequence

ATGTTCAAAATTTCCTCCACTTTTCTTCTACATTTCTTCCAAAAACGTTTTCTCAATACCATTTCTACTTCTACATTGCCTTTGCCCTCTGTTTCTACCCTCGAGTTCCTCAAAAATTCATGTCGCCTTTCTTCAGAATCTCCTTCTTCCGTCGCCGGTCGAAAGTTCCAATTCGATGAAAAAAACATCCAGCAGTACAAAGCCATTATCGGTTTCTTGAAGTCTCATGGATTCGAGGATTCAGAGATCGCCAAGTTGGTCTCGAAGCGACCTTTCATCCTTCAATCCAGAGTATCCAACAATCTGAAGCCTAAATTCGAGTTCCCCCAGGAAATCGGGTTCGTCGGTCCTTTACTTCTTAAGCTATTCCTATCAAACCCTTGGATTCTTTACAGGAACTTAGATTCTCAGTTAAAACCATTGTTTTTTTTCCTAAAGGAAATGCTTGGATCGGATGAACAAGTAACAACTGCTATTCGTCGTTCTCCGTGGCTTCTAACTTCTGATTTTAACGGTATTTTAAAATCTAACTTTGATGTTTTAGCCAGTGAAGGAGTACCTTCTAGCAATATAGCAAAAATGATTGCATATAATTCTAGAACTATAATGCAAACGGTTGATAGAATGATTCAAGTAGTGAAAATGGTTAAAGAATTGGGCATTGAACCAAAGTCTGCTAGGTTTCTTCATGCACTTAGAGTAAAAAATCTTCTTAAGGACAAAAAGATTGCTCGGGCGCTAACACTAGTGGAGAGTCAATTTGTGGAGAATTATGTTCTTAAGCATTTGGATGAAATACCAAAGCTAATGGACATATACCGGGGCAATGTCACAGCCGAAACCAGTTCTGTTCTATAG

Coding sequence (CDS)

ATGTTCAAAATTTCCTCCACTTTTCTTCTACATTTCTTCCAAAAACGTTTTCTCAATACCATTTCTACTTCTACATTGCCTTTGCCCTCTGTTTCTACCCTCGAGTTCCTCAAAAATTCATGTCGCCTTTCTTCAGAATCTCCTTCTTCCGTCGCCGGTCGAAAGTTCCAATTCGATGAAAAAAACATCCAGCAGTACAAAGCCATTATCGGTTTCTTGAAGTCTCATGGATTCGAGGATTCAGAGATCGCCAAGTTGGTCTCGAAGCGACCTTTCATCCTTCAATCCAGAGTATCCAACAATCTGAAGCCTAAATTCGAGTTCCCCCAGGAAATCGGGTTCGTCGGTCCTTTACTTCTTAAGCTATTCCTATCAAACCCTTGGATTCTTTACAGGAACTTAGATTCTCAGTTAAAACCATTGTTTTTTTTCCTAAAGGAAATGCTTGGATCGGATGAACAAGTAACAACTGCTATTCGTCGTTCTCCGTGGCTTCTAACTTCTGATTTTAACGGTATTTTAAAATCTAACTTTGATGTTTTAGCCAGTGAAGGAGTACCTTCTAGCAATATAGCAAAAATGATTGCATATAATTCTAGAACTATAATGCAAACGGTTGATAGAATGATTCAAGTAGTGAAAATGGTTAAAGAATTGGGCATTGAACCAAAGTCTGCTAGGTTTCTTCATGCACTTAGAGTAAAAAATCTTCTTAAGGACAAAAAGATTGCTCGGGCGCTAACACTAGTGGAGAGTCAATTTGTGGAGAATTATGTTCTTAAGCATTTGGATGAAATACCAAAGCTAATGGACATATACCGGGGCAATGTCACAGCCGAAACCAGTTCTGTTCTATAG

Protein sequence

MFKISSTFLLHFFQKRFLNTISTSTLPLPSVSTLEFLKNSCRLSSESPSSVAGRKFQFDEKNIQQYKAIIGFLKSHGFEDSEIAKLVSKRPFILQSRVSNNLKPKFEFPQEIGFVGPLLLKLFLSNPWILYRNLDSQLKPLFFFLKEMLGSDEQVTTAIRRSPWLLTSDFNGILKSNFDVLASEGVPSSNIAKMIAYNSRTIMQTVDRMIQVVKMVKELGIEPKSARFLHALRVKNLLKDKKIARALTLVESQFVENYVLKHLDEIPKLMDIYRGNVTAETSSVL*

Homology

[Close]

BLAST of Chy10G178420.1 vs. ExPASy Swiss-Prot
Match: Q9SZL6 (Transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MTERF6 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.5e-09
Identity = 36/145 (24.83%), Postives = 75/145 (51.72%), Query Frame = 0


Query: 69  IIGFLKSHGFEDSEIAKLVSKRPFILQSRVSNNLKPKFEFPQEIGF-VGPLLLKLFLSNP 128
           ++ F ++ G  ++++ K++   P ++   +   L     F   +G     ++ K+ + NP
Sbjct: 117 LLAFFQALGVPETQLGKMILFNPRLISYSIDTKLTVIVSFLASLGLDQDGMIGKVLVKNP 176

Query: 129 WILYRNLDSQLKPLFFFLKEMLG-SDEQVTTAIRRSPWLLTSDFNGILKSNFDVLASEGV 188
           +++  ++D +L+P   FLK  +G S++ + + +   P LL  D N ILK N+D L   G 
Sbjct: 177 FLMGYSVDKRLRPTTEFLKSSVGLSEDGIKSVVMNFPQLLCRDVNKILKPNYDYLKECGF 236

Query: 189 PSSNIAKMIAYNSRTIMQTVDRMIQ 212
             S IA M+    + ++++V   +Q
Sbjct: 237 GDSQIATMVTGYPQILIKSVKNSLQ 261

[Close]

BLAST of Chy10G178420.1 vs. ExPASy TrEMBL
Match: A0A5D3CWA2 (Transcription termination factor MTERF5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G002480 PE=3 SV=1)

HSP 1 Score: 378.6 bits (971), Expect = 2.2e-101
Identity = 220/374 (58.82%), Postives = 242/374 (64.71%), Query Frame = 0


Query: 1   MFKISSTFLLHFFQKRFLNTISTSTLPLPSVSTLEFLKNSCRLSSESPSSVAGRKFQFDE 60
           MFK SSTFLLHF QKRFLNT+STSTLPL SVST+EFL NSC LSS SP+S  GRK QFDE
Sbjct: 1   MFKFSSTFLLHFIQKRFLNTVSTSTLPLASVSTVEFLTNSCGLSSGSPTS-NGRKLQFDE 60

Query: 61  KNIQQYKAIIGFLKSHGFEDSEIAKLVSKRPFILQSRVSNNLKPKFEFPQEIGFVGPLLL 120
           KNIQQY+A+IGFLKSHG E+ +IAKLVS++P+ILQS+VS NLKPKFEF QEIGFVGPLL 
Sbjct: 61  KNIQQYEAVIGFLKSHGLENPQIAKLVSRKPWILQSKVSTNLKPKFEFLQEIGFVGPLLS 120

Query: 121 KLFLSNPWILYRNLDSQLKPLFFFLKEMLGSDEQVTTAIRRSPWLLTSDFNGILKSNFDV 180
           KL LSNP I YRNLDSQLKP FFFLKE+L SDEQVT AIR SPWLL SDF GILKSN DV
Sbjct: 121 KLILSNPRIFYRNLDSQLKPSFFFLKEILESDEQVTAAIRHSPWLLISDFKGILKSNIDV 180

Query: 181 LASEGVPSSNIAKMIAYNSRTIMQTVDRMIQVVKMVKELGIEPKSARFLHALR------- 240
           LASEGVPS NIAK+I  NSRTIM+ VDRMI+VVK VKELGIEPK+  F+HALR       
Sbjct: 181 LASEGVPSRNIAKLIVSNSRTIMRKVDRMIEVVKTVKELGIEPKAGMFVHALRIRCSVSD 240

Query: 241 ------------------------------------------------------------ 286
                                                                       
Sbjct: 241 STWKKKINVMKSLGWSETEIFTAFKKDPSFLGCSEEKMRDVADFCFNTAKLDPGSVIICP 300

[Close]

BLAST of Chy10G178420.1 vs. ExPASy TrEMBL
Match: A0A1S3BEQ3 (uncharacterized protein LOC103488865 OS=Cucumis melo OX=3656 GN=LOC103488865 PE=3 SV=1)

HSP 1 Score: 378.6 bits (971), Expect = 2.2e-101
Identity = 220/374 (58.82%), Postives = 242/374 (64.71%), Query Frame = 0


Query: 1   MFKISSTFLLHFFQKRFLNTISTSTLPLPSVSTLEFLKNSCRLSSESPSSVAGRKFQFDE 60
           MFK SSTFLLHF QKRFLNT+STSTLPL SVST+EFL NSC LSS SP+S  GRK QFDE
Sbjct: 1   MFKFSSTFLLHFIQKRFLNTVSTSTLPLASVSTVEFLTNSCGLSSGSPTS-NGRKLQFDE 60

Query: 61  KNIQQYKAIIGFLKSHGFEDSEIAKLVSKRPFILQSRVSNNLKPKFEFPQEIGFVGPLLL 120
           KNIQQY+A+IGFLKSHG E+ +IAKLVS++P+ILQS+VS NLKPKFEF QEIGFVGPLL 
Sbjct: 61  KNIQQYEAVIGFLKSHGLENPQIAKLVSRKPWILQSKVSTNLKPKFEFLQEIGFVGPLLS 120

Query: 121 KLFLSNPWILYRNLDSQLKPLFFFLKEMLGSDEQVTTAIRRSPWLLTSDFNGILKSNFDV 180
           KL LSNP I YRNLDSQLKP FFFLKE+L SDEQVT AIR SPWLL SDF GILKSN DV
Sbjct: 121 KLILSNPRIFYRNLDSQLKPSFFFLKEILESDEQVTAAIRHSPWLLISDFKGILKSNIDV 180

Query: 181 LASEGVPSSNIAKMIAYNSRTIMQTVDRMIQVVKMVKELGIEPKSARFLHALR------- 240
           LASEGVPS NIAK+I  NSRTIM+ VDRMI+VVK VKELGIEPK+  F+HALR       
Sbjct: 181 LASEGVPSRNIAKLIVSNSRTIMRKVDRMIEVVKTVKELGIEPKAGMFVHALRIRCSVSD 240

Query: 241 ------------------------------------------------------------ 286
                                                                       
Sbjct: 241 STWKKKINVMKSLGWSETEIFTAFKKDPSFLGCSEEKMRDVADFCFNTAKLDPGSVIICP 300

[Close]

BLAST of Chy10G178420.1 vs. ExPASy TrEMBL
Match: A0A5D3CWR8 (Transcription termination factor MTERF5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G003140 PE=3 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 1.3e-93
Identity = 209/375 (55.73%), Postives = 237/375 (63.20%), Query Frame = 0


Query: 1   MFKISSTFLLHFFQKRFLNTISTSTLPLPSVSTLEFLKNSCRLSSESPSSVAGRKFQFDE 60
           M KISS+FLLHFF  RFLNT+STSTLPLPSVST++FL NSC LSS SP+S AGRK QFDE
Sbjct: 1   MSKISSSFLLHFFHNRFLNTVSTSTLPLPSVSTIQFLTNSCGLSSGSPTS-AGRKLQFDE 60

Query: 61  KNIQQYKAIIGFLKSHGFEDSEIAKLVSKRPFILQSRVSNNLKPKFEFPQEIGFVGPLLL 120
           K+IQQY A+I FLKSHGFE+++IA LVSKRP ILQS+VS NLKP+FEF QEIGF+GPLL 
Sbjct: 61  KHIQQYGAVIDFLKSHGFENTQIANLVSKRPSILQSKVSTNLKPRFEFFQEIGFIGPLLP 120

Query: 121 KLFLSNPWILYRNLDSQLKPLFFFLKEMLGSDEQVTTAIRRSPWLLTSDFNGILKSNFDV 180
           KL LS PW+L  +LDSQLKP FFFLK++L SDEQVT AI R P LL SD  G LKSN DV
Sbjct: 121 KLILSTPWVLGSSLDSQLKPSFFFLKDILESDEQVTAAICRFPSLLVSDLKGNLKSNIDV 180

Query: 181 LASEGVPSSNIAKMIAYNSRTIMQTVDRMIQVVKMVKELGIEPKSARFLHALR------- 240
           LASEGVPS NIAKMI  + RT+MQ VDRMIQVVK VKELGIEPK+ +F+HA+R       
Sbjct: 181 LASEGVPSRNIAKMIEMDPRTVMQKVDRMIQVVKKVKELGIEPKTRKFVHAIRIRGSLSD 240

Query: 241 ------------------------------------------------------------ 286
                                                                       
Sbjct: 241 STWKKKINVMKSLGWSENEILTAFKKDPNYLSCSEEKLRDVTDFCLNTAKLDPETVISYP 300

[Close]

BLAST of Chy10G178420.1 vs. ExPASy TrEMBL
Match: A0A5D3CX09 (Transcription termination factor MTERF5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G002920 PE=3 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 1.3e-93
Identity = 208/374 (55.61%), Postives = 239/374 (63.90%), Query Frame = 0


Query: 1   MFKISSTFLLHFFQKRFLNTISTSTLPLPSVSTLEFLKNSCRLSSESPSSVAGRKFQFDE 60
           M KISS+FLLHFF  RFLNTI TSTLPL SVST++FL NSC LSS SP+S AGRK QF E
Sbjct: 1   MSKISSSFLLHFFHNRFLNTIPTSTLPLASVSTIQFLTNSCGLSSGSPTS-AGRKLQFGE 60

Query: 61  KNIQQYKAIIGFLKSHGFEDSEIAKLVSKRPFILQSRVSNNLKPKFEFPQEIGFVGPLLL 120
           KN QQY A+I FLKSHGFE+S+IAKLVS++P ILQSRVS NLKPKFEF QEIGFVGPLL 
Sbjct: 61  KNTQQYGAVIDFLKSHGFENSQIAKLVSRQPSILQSRVSANLKPKFEFLQEIGFVGPLLP 120

Query: 121 KLFLSNPWILYRNLDSQLKPLFFFLKEMLGSDEQVTTAIRRSPWLLTSDFNGILKSNFDV 180
           KL +S+P IL ++LDS+LKP F  LKEMLGSDE+VT AI R+ WLLT DF G++KSNFDV
Sbjct: 121 KLIVSSPSILNKSLDSKLKPSFRLLKEMLGSDERVTAAICRASWLLTYDFKGVIKSNFDV 180

Query: 181 LASEGVPSSNIAKMIAYNSRTIMQTVDRMIQVVKMVKELGIEPKSARFLHALR------- 240
           L SEGVPS NIAKMIA+N RTIMQ VD+MIQVVK VKELGIEPK+  F+HALR       
Sbjct: 181 LVSEGVPSRNIAKMIAWNPRTIMQRVDKMIQVVKNVKELGIEPKAGMFVHALRVRCSMSE 240

Query: 241 ------------------------------------------------------------ 286
                                                                       
Sbjct: 241 SHWKRKINVMKSLGWSEEEILTAFKRYPNYLTCSEEKMRDVADFCFNTAKLDPGTLISYP 300

[Close]

BLAST of Chy10G178420.1 vs. ExPASy TrEMBL
Match: A0A1S3BEP9 (uncharacterized protein LOC103488811 OS=Cucumis melo OX=3656 GN=LOC103488811 PE=3 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 1.3e-93
Identity = 209/375 (55.73%), Postives = 237/375 (63.20%), Query Frame = 0


Query: 1   MFKISSTFLLHFFQKRFLNTISTSTLPLPSVSTLEFLKNSCRLSSESPSSVAGRKFQFDE 60
           M KISS+FLLHFF  RFLNT+STSTLPLPSVST++FL NSC LSS SP+S AGRK QFDE
Sbjct: 1   MSKISSSFLLHFFHNRFLNTVSTSTLPLPSVSTIQFLTNSCGLSSGSPTS-AGRKLQFDE 60

Query: 61  KNIQQYKAIIGFLKSHGFEDSEIAKLVSKRPFILQSRVSNNLKPKFEFPQEIGFVGPLLL 120
           K+IQQY A+I FLKSHGFE+++IA LVSKRP ILQS+VS NLKP+FEF QEIGF+GPLL 
Sbjct: 61  KHIQQYGAVIDFLKSHGFENTQIANLVSKRPSILQSKVSTNLKPRFEFFQEIGFIGPLLP 120

Query: 121 KLFLSNPWILYRNLDSQLKPLFFFLKEMLGSDEQVTTAIRRSPWLLTSDFNGILKSNFDV 180
           KL LS PW+L  +LDSQLKP FFFLK++L SDEQVT AI R P LL SD  G LKSN DV
Sbjct: 121 KLILSTPWVLGSSLDSQLKPSFFFLKDILESDEQVTAAICRFPSLLVSDLKGNLKSNIDV 180

Query: 181 LASEGVPSSNIAKMIAYNSRTIMQTVDRMIQVVKMVKELGIEPKSARFLHALR------- 240
           LASEGVPS NIAKMI  + RT+MQ VDRMIQVVK VKELGIEPK+ +F+HA+R       
Sbjct: 181 LASEGVPSRNIAKMIEMDPRTVMQKVDRMIQVVKKVKELGIEPKTRKFVHAIRIRGSLSD 240

Query: 241 ------------------------------------------------------------ 286
                                                                       
Sbjct: 241 STWKKKINVMKSLGWSENEILTAFKKDPNYLSCSEEKLRDVTDFCLNTAKLDPETVISYP 300

[Close]

BLAST of Chy10G178420.1 vs. NCBI nr
Match: XP_011654901.1 (uncharacterized protein LOC101206293 [Cucumis sativus] >KAE8647959.1 hypothetical protein Csa_000643 [Cucumis sativus])

HSP 1 Score: 479 bits (1234), Expect = 8.44e-168
Identity = 269/373 (72.12%), Postives = 274/373 (73.46%), Query Frame = 0


Query: 1   MFKISSTFLLHFFQKRFLNTISTSTLPLPSVSTLEFLKNSCRLSSESPSSVAGRKFQFDE 60
           MFK SSTFLLHFFQKR LNTISTSTLPLPSVSTLEFLKNSCRLSSESPS VAGRKFQFDE
Sbjct: 1   MFKFSSTFLLHFFQKRSLNTISTSTLPLPSVSTLEFLKNSCRLSSESPSFVAGRKFQFDE 60

Query: 61  KNIQQYKAIIGFLKSHGFEDSEIAKLVSKRPFILQSRVSNNLKPKFEFPQEIGFVGPLLL 120
           KNIQQY+AIIGFLKSHGFEDSEIAKLVSKRPFILQSRVSNNLKPKFEF QEIGFVGPLL 
Sbjct: 61  KNIQQYEAIIGFLKSHGFEDSEIAKLVSKRPFILQSRVSNNLKPKFEFLQEIGFVGPLLF 120

Query: 121 KLFLSNPWILYRNLDSQLKPLFFFLKEMLGSDEQVTTAIRRSPWLLTSDFNGILKSNFDV 180
           KLFLSNPWILYRNLDSQLKPLFFFLKEMLGSDEQV +AIRRSPWLLTSDF GILKSN DV
Sbjct: 121 KLFLSNPWILYRNLDSQLKPLFFFLKEMLGSDEQVISAIRRSPWLLTSDFKGILKSNIDV 180

Query: 181 LASEGVPSSNIAKMIAYNSRTIMQTVDRMIQVVKMVKELGIEPKSARFLHALRV------ 240
           LASEGVPSSNIAK+IAYNSRTIM TVDRMIQVVKMVKELGIEPKSARFLHALRV      
Sbjct: 181 LASEGVPSSNIAKLIAYNSRTIMHTVDRMIQVVKMVKELGIEPKSARFLHALRVRCAMSD 240

Query: 241 ------------------------------------------------------------ 285
                                                                       
Sbjct: 241 STWKKKINVLKSLGWSENEILTLFKRQPICLARSEEAFRDVADFCFNTAKLDPETVISYP 300

[Close]

BLAST of Chy10G178420.1 vs. NCBI nr
Match: XP_008446011.1 (PREDICTED: uncharacterized protein LOC103488865 [Cucumis melo] >KAA0034174.1 transcription termination factor MTERF5 [Cucumis melo var. makuwa] >TYK15745.1 transcription termination factor MTERF5 [Cucumis melo var. makuwa])

HSP 1 Score: 377 bits (969), Expect = 1.60e-127
Identity = 220/374 (58.82%), Postives = 242/374 (64.71%), Query Frame = 0


Query: 1   MFKISSTFLLHFFQKRFLNTISTSTLPLPSVSTLEFLKNSCRLSSESPSSVAGRKFQFDE 60
           MFK SSTFLLHF QKRFLNT+STSTLPL SVST+EFL NSC LSS SP+S  GRK QFDE
Sbjct: 1   MFKFSSTFLLHFIQKRFLNTVSTSTLPLASVSTVEFLTNSCGLSSGSPTS-NGRKLQFDE 60

Query: 61  KNIQQYKAIIGFLKSHGFEDSEIAKLVSKRPFILQSRVSNNLKPKFEFPQEIGFVGPLLL 120
           KNIQQY+A+IGFLKSHG E+ +IAKLVS++P+ILQS+VS NLKPKFEF QEIGFVGPLL 
Sbjct: 61  KNIQQYEAVIGFLKSHGLENPQIAKLVSRKPWILQSKVSTNLKPKFEFLQEIGFVGPLLS 120

Query: 121 KLFLSNPWILYRNLDSQLKPLFFFLKEMLGSDEQVTTAIRRSPWLLTSDFNGILKSNFDV 180
           KL LSNP I YRNLDSQLKP FFFLKE+L SDEQVT AIR SPWLL SDF GILKSN DV
Sbjct: 121 KLILSNPRIFYRNLDSQLKPSFFFLKEILESDEQVTAAIRHSPWLLISDFKGILKSNIDV 180

Query: 181 LASEGVPSSNIAKMIAYNSRTIMQTVDRMIQVVKMVKELGIEPKSARFLHALR------- 240
           LASEGVPS NIAK+I  NSRTIM+ VDRMI+VVK VKELGIEPK+  F+HALR       
Sbjct: 181 LASEGVPSRNIAKLIVSNSRTIMRKVDRMIEVVKTVKELGIEPKAGMFVHALRIRCSVSD 240

Query: 241 ------------------------------------------------------------ 285
                                                                       
Sbjct: 241 STWKKKINVMKSLGWSETEIFTAFKKDPSFLGCSEEKMRDVADFCFNTAKLDPGSVIICP 300

[Close]

BLAST of Chy10G178420.1 vs. NCBI nr
Match: TYK15788.1 (transcription termination factor MTERF5 [Cucumis melo var. makuwa])

HSP 1 Score: 352 bits (902), Expect = 2.35e-117
Identity = 208/374 (55.61%), Postives = 239/374 (63.90%), Query Frame = 0


Query: 1   MFKISSTFLLHFFQKRFLNTISTSTLPLPSVSTLEFLKNSCRLSSESPSSVAGRKFQFDE 60
           M KISS+FLLHFF  RFLNTI TSTLPL SVST++FL NSC LSS SP+S AGRK QF E
Sbjct: 1   MSKISSSFLLHFFHNRFLNTIPTSTLPLASVSTIQFLTNSCGLSSGSPTS-AGRKLQFGE 60

Query: 61  KNIQQYKAIIGFLKSHGFEDSEIAKLVSKRPFILQSRVSNNLKPKFEFPQEIGFVGPLLL 120
           KN QQY A+I FLKSHGFE+S+IAKLVS++P ILQSRVS NLKPKFEF QEIGFVGPLL 
Sbjct: 61  KNTQQYGAVIDFLKSHGFENSQIAKLVSRQPSILQSRVSANLKPKFEFLQEIGFVGPLLP 120

Query: 121 KLFLSNPWILYRNLDSQLKPLFFFLKEMLGSDEQVTTAIRRSPWLLTSDFNGILKSNFDV 180
           KL +S+P IL ++LDS+LKP F  LKEMLGSDE+VT AI R+ WLLT DF G++KSNFDV
Sbjct: 121 KLIVSSPSILNKSLDSKLKPSFRLLKEMLGSDERVTAAICRASWLLTYDFKGVIKSNFDV 180

Query: 181 LASEGVPSSNIAKMIAYNSRTIMQTVDRMIQVVKMVKELGIEPKSARFLHALRV------ 240
           L SEGVPS NIAKMIA+N RTIMQ VD+MIQVVK VKELGIEPK+  F+HALRV      
Sbjct: 181 LVSEGVPSRNIAKMIAWNPRTIMQRVDKMIQVVKNVKELGIEPKAGMFVHALRVRCSMSE 240

Query: 241 ------------------------------------------------------------ 285
                                                                       
Sbjct: 241 SHWKRKINVMKSLGWSEEEILTAFKRYPNYLTCSEEKMRDVADFCFNTAKLDPGTLISYP 300

[Close]

BLAST of Chy10G178420.1 vs. NCBI nr
Match: XP_008445932.1 (PREDICTED: uncharacterized protein LOC103488811 [Cucumis melo] >KAA0034111.1 transcription termination factor MTERF5 [Cucumis melo var. makuwa] >TYK15810.1 transcription termination factor MTERF5 [Cucumis melo var. makuwa])

HSP 1 Score: 352 bits (902), Expect = 2.43e-117
Identity = 209/375 (55.73%), Postives = 237/375 (63.20%), Query Frame = 0


Query: 1   MFKISSTFLLHFFQKRFLNTISTSTLPLPSVSTLEFLKNSCRLSSESPSSVAGRKFQFDE 60
           M KISS+FLLHFF  RFLNT+STSTLPLPSVST++FL NSC LSS SP+S AGRK QFDE
Sbjct: 1   MSKISSSFLLHFFHNRFLNTVSTSTLPLPSVSTIQFLTNSCGLSSGSPTS-AGRKLQFDE 60

Query: 61  KNIQQYKAIIGFLKSHGFEDSEIAKLVSKRPFILQSRVSNNLKPKFEFPQEIGFVGPLLL 120
           K+IQQY A+I FLKSHGFE+++IA LVSKRP ILQS+VS NLKP+FEF QEIGF+GPLL 
Sbjct: 61  KHIQQYGAVIDFLKSHGFENTQIANLVSKRPSILQSKVSTNLKPRFEFFQEIGFIGPLLP 120

Query: 121 KLFLSNPWILYRNLDSQLKPLFFFLKEMLGSDEQVTTAIRRSPWLLTSDFNGILKSNFDV 180
           KL LS PW+L  +LDSQLKP FFFLK++L SDEQVT AI R P LL SD  G LKSN DV
Sbjct: 121 KLILSTPWVLGSSLDSQLKPSFFFLKDILESDEQVTAAICRFPSLLVSDLKGNLKSNIDV 180

Query: 181 LASEGVPSSNIAKMIAYNSRTIMQTVDRMIQVVKMVKELGIEPKSARFLHALR------- 240
           LASEGVPS NIAKMI  + RT+MQ VDRMIQVVK VKELGIEPK+ +F+HA+R       
Sbjct: 181 LASEGVPSRNIAKMIEMDPRTVMQKVDRMIQVVKKVKELGIEPKTRKFVHAIRIRGSLSD 240

Query: 241 ------------------------------------------------------------ 285
                                                                       
Sbjct: 241 STWKKKINVMKSLGWSENEILTAFKKDPNYLSCSEEKLRDVTDFCLNTAKLDPETVISYP 300

[Close]

BLAST of Chy10G178420.1 vs. NCBI nr
Match: KAA0034131.1 (transcription termination factor MTERF5 [Cucumis melo var. makuwa])

HSP 1 Score: 350 bits (897), Expect = 1.34e-116
Identity = 207/374 (55.35%), Postives = 238/374 (63.64%), Query Frame = 0


Query: 1   MFKISSTFLLHFFQKRFLNTISTSTLPLPSVSTLEFLKNSCRLSSESPSSVAGRKFQFDE 60
           M KISS+FLLHFF  RFLNTI TSTLPL SVST++FL NSC LSS SP+S AGRK QF E
Sbjct: 1   MSKISSSFLLHFFHNRFLNTIPTSTLPLASVSTIQFLTNSCGLSSGSPTS-AGRKLQFGE 60

Query: 61  KNIQQYKAIIGFLKSHGFEDSEIAKLVSKRPFILQSRVSNNLKPKFEFPQEIGFVGPLLL 120
           KN QQY A+I FLKSHGFE+ +IAKLVS++P ILQSRVS NLKPKFEF QEIGFVGPLL 
Sbjct: 61  KNTQQYGAVIDFLKSHGFENPQIAKLVSRQPSILQSRVSANLKPKFEFLQEIGFVGPLLP 120

Query: 121 KLFLSNPWILYRNLDSQLKPLFFFLKEMLGSDEQVTTAIRRSPWLLTSDFNGILKSNFDV 180
           KL +S+P IL ++LDS+LKP F  LKEMLGSDE+VT AI R+ WLLT DF G++KSNFDV
Sbjct: 121 KLIVSSPSILNKSLDSKLKPSFRLLKEMLGSDERVTAAICRASWLLTYDFKGVIKSNFDV 180

Query: 181 LASEGVPSSNIAKMIAYNSRTIMQTVDRMIQVVKMVKELGIEPKSARFLHALRV------ 240
           L SEGVPS NIAKMIA+N RTIMQ VD+MIQVVK VKELGIEPK+  F+HALRV      
Sbjct: 181 LVSEGVPSRNIAKMIAWNPRTIMQRVDKMIQVVKNVKELGIEPKAGMFVHALRVRCSMSE 240

Query: 241 ------------------------------------------------------------ 285
                                                                       
Sbjct: 241 SHWKRKINVMKSLGWSEEEILTAFKRYPNYLTCSEEKMRDVADFCFNTAKLDPGTLISYP 300

[Close]

BLAST of Chy10G178420.1 vs. TAIR 10
Match: AT5G07900.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 118.6 bits (296), Expect = 8.1e-27
Identity = 71/206 (34.47%), Postives = 110/206 (53.40%), Query Frame = 0


Query: 33  TLEFLKNSCRLSSESPSSVAGRKFQFDEKNIQQYKAIIGFLKSHGFEDSEIAKLVSKRPF 92
           TL +L +SC LS +S ++VA RK   D    ++   ++  L+ HGF  ++I+ LV KRP 
Sbjct: 71  TLNYLIDSCGLSPDS-ATVASRKLLLDSP--ERPNTVLNLLRDHGFTTAQISSLVKKRPV 130

Query: 93  ILQSRVSNNLKPKFEFPQEIGFVGPLLLKLFLSNPWILYRNLDSQLKPLFFFLKEMLGSD 152
           +L +   + L PK  F   IG    LL +   S+P IL R+L +QL P + FLK +L SD
Sbjct: 131 LLLANAESVLLPKLSFFLSIGVSKSLLARTLASDPTILTRSLVNQLIPSYNFLKSVLDSD 190

Query: 153 EQVTTAIRRSPWLLTSDFNGILKSNFDVLASEGVPSSNIAKMIAYNSRTIMQTVDRMIQV 212
           E++  A+RR+ W+   D    L  N + +A  GVP   I  ++ +    +MQ       +
Sbjct: 191 EKIVAALRRTTWVFLEDHTKNLVPNINYMAETGVPEKCIKLLLTHFPEAVMQKNHEFQAI 250

Query: 213 VKMVKELGIEPKSARF---LHALRVK 236
            K  +E+G  P+ + F   +HAL  K
Sbjct: 251 AKQAQEMGFNPQKSTFVLAIHALSGK 273

[Close]

BLAST of Chy10G178420.1 vs. TAIR 10
Match: AT3G46950.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 67.4 bits (163), Expect = 2.1e-11
Identity = 50/232 (21.55%), Postives = 113/232 (48.71%), Query Frame = 0


Query: 12  FFQKRFLNTISTSTLPLPSVSTLEFLKNSCRLSSESPSSVAGRKFQFDEKNIQQYKAIIG 71
           F  K F +TI+  + P  S  T+ +L  S  L+ +   +++ +K  F++K      +++ 
Sbjct: 33  FTTKSFSSTIAKDSSPKGSTFTVSYLVESLGLTKKLAETIS-KKVTFEDK--VNPDSVLN 92

Query: 72  FLKSHGFEDSEIAKLVSKRPFILQSRVSNNLKPKFEFPQEIGFVGPLLLKLFLSNPWILY 131
            L+S+GF+DS+I++++   P +L +    +L+PK +F +  G     ++++  + P IL 
Sbjct: 93  LLRSNGFKDSQISRIIRAYPRLLVTDAEKSLRPKLQFLKSRGASSSEVIEIVSNVPTILD 152

Query: 132 RNLDSQLKPLFFFLKEMLGSDEQVTTAIRRSPWLLTSDFNGILKSNFDVLASEGVPSSNI 191
           +  +  +   + F+K+++   + +  +             G    N  VL   GVP   +
Sbjct: 153 KKGEESVSLYYDFVKDIMQDGKSLCISCPEGK-------KGNRIRNISVLRELGVPQKLL 212

Query: 192 AKMIAYNSRTIMQTVDRMIQVVKMVKELGIEPKSARFLHALRVKNLLKDKKI 244
             ++    + +    ++  + +K V ++G +P  ++F+ AL V   + +K I
Sbjct: 213 FSLLISRYQPVCGK-EKFEESLKKVVDMGFDPAKSKFVEALHVVYEMSEKTI 253

[Close]

BLAST of Chy10G178420.1 vs. TAIR 10
Match: AT1G61980.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 67.0 bits (162), Expect = 2.8e-11
Identity = 57/211 (27.01%), Postives = 103/211 (48.82%), Query Frame = 0


Query: 33  TLEFLKNSCRLSSESPSSVAGRKFQFDEKNIQQYKAIIGFLKSHGFEDSEIAKLVSKRPF 92
           T+ +L +S  L  +   SV+ RK  F++K+     +++  L+SHGF DS+I+ +V+  P 
Sbjct: 54  TVSYLVDSLGLPKKLAESVS-RKVSFEDKD--NPDSVLNLLRSHGFTDSQISTIVTDYPQ 113

Query: 93  ILQSRVSNNLKPKFEFPQEIGFVGPLLLKLFLSNPWILYRNLDSQLKPLFFFLKEMLGSD 152
           +L +    +L PK +F Q  G     L ++  + P IL +     +   + F+KE L  D
Sbjct: 114 LLVADAEKSLAPKLQFLQSRGASSSELTEIVSTVPKILGKRGHKTISVFYDFIKETL-LD 173

Query: 153 EQVTTAIRRSPWLLTSDFNGILKSNFDVLASEGVPSSNIAKMIAYNSRTIMQTVDRMIQV 212
           +   +     P+   +  N I   N  VL   G+P   +  ++      +    ++  + 
Sbjct: 174 KSSKSEKSCQPFPQGNLENKI--RNLSVLRELGMPHKLLFPLLISCDVPVFGK-EKFEES 233

Query: 213 VKMVKELGIEPKSARFLHALRVKNLLKDKKI 244
           +K V E+G +P +++F+ AL V   L DK I
Sbjct: 234 LKKVVEMGFDPSTSKFVEALCVVQRLSDKNI 257

[Close]

BLAST of Chy10G178420.1 vs. TAIR 10
Match: AT5G23930.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 67.0 bits (162), Expect = 2.8e-11
Identity = 54/211 (25.59%), Postives = 101/211 (47.87%), Query Frame = 0


Query: 33  TLEFLKNSCRLSSESPSSVAGRKFQFDEKNIQQYKAIIGFLKSHGFEDSEIAKLVSKRPF 92
           T+ +L +S  L+++   S++  K  FDEK      +++  L+S+GF+DS+I+ ++S  P 
Sbjct: 57  TVSYLIDSLGLTTKLAESIS-MKANFDEKG--NPDSVLKLLRSYGFKDSQISSIISTYPR 116

Query: 93  ILQSRVSNNLKPKFEFPQEIGFVGPLLLKLFLSNPWILYRNLDSQLKPLFFFLKEMLGSD 152
            L       L+ K  F +  G     L ++    P IL +     +   + ++KE+L   
Sbjct: 117 FLIENPEKTLRAKLHFLKLNGASSSELTEIVSKVPKILGKRGGKWISHYYDYVKEILQDQ 176

Query: 153 EQVTTAIRRSPWLLTSDFNGILKSNFDVLASEGVPSSNIAKMIAYNSRTIMQTVDRMIQV 212
           +  +++ +R               N  VL   GVP   +  ++   ++ +    +R  + 
Sbjct: 177 DSSSSSSKRK--------QTNRNRNVSVLRKLGVPQRLLLNLLISRAKPVCGK-ERFEES 236

Query: 213 VKMVKELGIEPKSARFLHALRVKNLLKDKKI 244
           VK + E+G +PKS +F++AL V   L DK I
Sbjct: 237 VKKIVEMGFDPKSPKFVNALYVFYELSDKTI 255

[Close]

BLAST of Chy10G178420.1 vs. TAIR 10
Match: AT1G61970.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 66.6 bits (161), Expect = 3.6e-11
Identity = 53/220 (24.09%), Postives = 108/220 (49.09%), Query Frame = 0


Query: 33  TLEFLKNSCRLSSESPSSVAGRKFQFDEKNIQQYKAIIGFLKSHGFEDSEIAKLVSKRPF 92
           T+ +L +S  L+++   S++ RK  F++KN     +++  L SHGF  S+I+ ++   P 
Sbjct: 54  TVSYLVDSLGLTTKLAESIS-RKVSFEDKN--NPDSVLNLLTSHGFTGSQISTIIRDYPQ 113

Query: 93  ILQSRVSNNLKPKFEFPQEIGFVGPLLLKLFLSNPWILYRNLDSQLKPLFFFLKEMLGSD 152
           +L +    +L PK +F Q  G     + ++  S P IL +     +   + F+K+ L   
Sbjct: 114 LLIADAEKSLGPKLQFLQSRGASSSEITEIVSSVPEILGKKGHKTISVYYDFIKDTLLEK 173

Query: 153 EQVTTAIRRSPWLLTSDFNGILKSNFDVLASEGVPSSNIAKMIAYNSRTIMQTVDRMIQV 212
                 +  S  L   +    ++ N  VL   G+P   +  ++  +S+ +    ++  + 
Sbjct: 174 SSKNEKLCHS--LPQGNLENKIR-NVSVLRELGMPHKLLFSLLISDSQPVCGK-EKFEET 233

Query: 213 VKMVKELGIEPKSARFLHALRVKNLLKDKKIARALTLVES 253
           +K V E+G +P +++F+ AL+V   + +K I   + L +S
Sbjct: 234 LKKVVEMGFDPTTSKFVEALQVIYKMNEKTIEEKVHLYKS 266

The following BLAST results are available for this feature:

BLAST of Chy10G178420.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZL6	2.5e-09	24.83	Transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Arabidop...	[more]

BLAST of Chy10G178420.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CWA2	2.2e-101	58.82	Transcription termination factor MTERF5 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A1S3BEQ3	2.2e-101	58.82	uncharacterized protein LOC103488865 OS=Cucumis melo OX=3656 GN=LOC103488865 PE=...	[more]
A0A5D3CWR8	1.3e-93	55.73	Transcription termination factor MTERF5 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3CX09	1.3e-93	55.61	Transcription termination factor MTERF5 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A1S3BEP9	1.3e-93	55.73	uncharacterized protein LOC103488811 OS=Cucumis melo OX=3656 GN=LOC103488811 PE=...	[more]

BLAST of Chy10G178420.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011654901.1	8.44e-168	72.12	uncharacterized protein LOC101206293 [Cucumis sativus] >KAE8647959.1 hypothetica...	[more]
XP_008446011.1	1.60e-127	58.82	PREDICTED: uncharacterized protein LOC103488865 [Cucumis melo] >KAA0034174.1 tra...	[more]
TYK15788.1	2.35e-117	55.61	transcription termination factor MTERF5 [Cucumis melo var. makuwa]	[more]
XP_008445932.1	2.43e-117	55.73	PREDICTED: uncharacterized protein LOC103488811 [Cucumis melo] >KAA0034111.1 tra...	[more]
KAA0034131.1	1.34e-116	55.35	transcription termination factor MTERF5 [Cucumis melo var. makuwa]	[more]

BLAST of Chy10G178420.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G07900.1	8.1e-27	34.47	Mitochondrial transcription termination factor family protein	[more]
AT3G46950.1	2.1e-11	21.55	Mitochondrial transcription termination factor family protein	[more]
AT1G61980.1	2.8e-11	27.01	Mitochondrial transcription termination factor family protein	[more]
AT5G23930.1	2.8e-11	25.59	Mitochondrial transcription termination factor family protein	[more]
AT1G61970.1	3.6e-11	24.09	Mitochondrial transcription termination factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	SMART	SM00733	mt_12	coord: 84..115 e-value: 0.0087 score: 25.3 coord: 156..187 e-value: 52.0 score: 12.7 coord: 120..151 e-value: 0.091 score: 21.9 coord: 192..222 e-value: 21.0 score: 14.0
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PFAM	PF02536	mTERF	coord: 33..109 e-value: 5.8E-6 score: 25.5 coord: 71..274 e-value: 4.9E-19 score: 68.4
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 15..234
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 229..277
IPR038538	MTERF superfamily, mitochondrial/chloroplastic	GENE3D	1.25.70.10	Transcription termination factor 3, mitochondrial	coord: 52..269 e-value: 1.3E-32 score: 115.0
None	No IPR available	PANTHER	PTHR13068:SF31	TRANSCRIPTION TERMINATION FACTOR MTERF15, MITOCHONDRIAL-LIKE	coord: 15..234 coord: 229..277

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Chy10G178420	Chy10G178420	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy10G178420.1.exon1	Chy10G178420.1.exon1	exon
Chy10G178420.1.exon2	Chy10G178420.1.exon2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy10G178420.1.cds1	Chy10G178420.1.cds1	CDS
Chy10G178420.1.cds2	Chy10G178420.1.cds2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Chy10G178420.1	Chy10G178420.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003690	double-stranded DNA binding