Chy10G178380 (gene) Cucumber (hystrix) v1

Overview
NameChy10G178380
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
Descriptionexosome complex component RRP41 homolog
LocationchrH10: 12991472 .. 12997435 (+)
RNA-Seq ExpressionChy10G178380
SyntenyChy10G178380
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTTCGTAACCCCCGAAGGACTTCGCCAAGACGGTCGCCGTCCCAGGGAGGTACTTGTTTCCTTTCTCATTCTCTTGCTTGATGCTTTTTCCCTTTTGTTTGAATTATTTGCTTCTGTTCCGTTCAATTTTTACTCTGTTGTTTAATTTTAGCTGAGGGAAATGCGTGCGGAAATTGGGGCTGTTTCTAAAGCAAATGGGTGGGTATCTACTCTCACTTTTCTTCCTTTTTTAGCTTTTGAGATATATGTATCGAATACTAAGTTACTGAATATCCTTACTTTTTTCTGAATTAGGTCTGCTGTTTTTGAGATGGGTAACACCAAAGTTCTTGCTGCTGTATATGGTCCTAGAGAGGTATAACATCTCAGCTATTATCGTATCTATCTCATTCAAAATGGCATGAATACAAGAACTTGTTGACCGCTGTATTTCTTCTATTAAATCATCTGGGTGTTTATTGGAGAGCTTCTGTATGGTTGGAATGAATTATTTTGTTGTATGTGTAGGTCCAGAATAAGAGTCAGCAAATGAGCAACCAAGCACTGGTTATACTTTCTTCTGGATATTCAAAGTTTCATTTCTTAATGATCGTTGGTTATGCATTGTCTGAATCTCTGATCTCTTTCAGGTTCGTTGTGAGTACACCATGGCTAATTTCAGTACTGGAGATCGCATGAGAAAGCCCAAGGGAGACAGGTTTTTTCACTTTTTATGTGTCTCTGTTTGGTACATTTGTTGGTTTGATGCCATGAATGAAAGTAGTTGATTCTTGGAATAGGATTATGGTGAACATTCATATCTTAAAACATAAGAAAATTGTACCCATGTAAGGTAGCATTTAGATTATTCTCTTCAGAATATGGTGAGGGTAAAATTAGTAGTGTAGTAGTTCCCAGTTCAATGACATTGCTTAGGTCTCACCAAATGGAAGGGGTTAAAAACGGATAGGAAAGAAATATGTTATAGATTCATTCATATCTATTTTGTTAACCGTTATATTAATTTATGGCATTTTTACATTCAGGCGGTCTACAGAGATATCTTTAGTTATTCGCCAGACAATGGAGGAATGCATTCTAACACATTTAATGCCTCGATCTCAGGTTTTCTACAATAATCCAAGAGCTGCTTCTCTATGATTTCAACCTTTTTCTATCCTCATTTCTAGTTTTCATGTGCAGATAGATATTTTTGTCCAAGTTCTTCAAGCAGATGGAGGTACGATTAGAGTTATTGATTAAGTTTATCAGCTAAAGCTCTTCAAATTATTAGAATATTAATTCTAGTTCAGATATTTCAATTCCATATTCCCTTTTATTGCCATCTTTCTGTGTATTTGTCATTTTCTTCAAATATTCCTCTTATTTTTGTTCTCTTTCACGAAATAGAATACGAAAGGTTTTTCTCTACACTCCTTTACACCAAGATGTTTGGAGCCTGCAACCATATTTTTGTTCACTACCTAATCATTCAATGATGGACCTCACTTTTGTCACCTTCTCTCCATGGCTTGTTCAATTGAACAGTCTTTTTAGCCCATGCCCCTAAAAAAAACAAGGCCAATGCTCTATAGGAAACTTGGTTTGAAAGATTCAAGTAGAAACAAAAATGAAGTTTGAGATATGACCAATTTCAAGTCTCTCACTGTTTCACCTCCGTTTTTTGTTGAAATTACAAATTTTTAAAGCCAACATGAGCACAACTCAACAAACGAGACATTATTTTCTTCTTTTGAGGTTGGAGATTCATATCTTCATCAGCATATTTATCATATTGTTTTATTTTCCTTAAAAAAGTTTTAAGTCCAACAGAGACTTTTTATCATCAATCAATGATGCCTCATTTCTATCTCACGTTCATGTATTTTCTGTCATCAAAGAAAGTTCTCGTTACTTGTGTATTTGTTCAAAGAATACATTTTAACTTACCCATAAGCTGCAACTAGTGTTTTTATGCCTTGCATAATGTTCTGTCTTCAGTGATAGTGATTTGAAGCATCTAGAACTACTTGGCTTCAATGTTAGTAAAACTTGTTTTTGTTTTTTAGAAATGAAACATAATTTTCAAAAACCAAATTATTATCGAACGGGGCCTAAGCAGTGTTTTAAAAAGCTCCCTCAGGCCTCATTTGCTTTATTTTCATGAAGAATTCTTTAGACATGCCCTGGAAATTTCCTTGTGTAGGTACCAGATCAGCATGCATAAATGCTGCAACTCTGGCGCTTGCTGATGCTGGAATTCCAATGCGTGATATTGTTACTTCCTGCAGTGCTGGATACCTTAATAGCAATGCTTTGCTTGGTAATTTAGAGCTCTCCCCCTCAGTTAGATTTCACTGTATTGGACGTGAAAAACTTTCTTATATTGCTTACAACAACTAATATGAATTGGCACTATGATATGGACAGATTTGAATTATGTAGAGGATAGTGCTGGAGGCCCTGATGTCACTGTAGGCTTTCTACCTAAGATGGATAAAGTTACTCTTCTACAGGTTCATTAACTTCTACCTCTTCCTATTCTTATCCACCTTGACCTGTTTTGTGATTTTGTAATGATAACATTTCACTCACGTTGACATGATCTTGGTGCAGATGGATGCTAAATTACCCATTGATGTATTTGAGGATGTGATGGAACTTGCAATTGAGGGCTGCAAAGCCATAGCTACTTACATTCGAAAAGTAAGGACTTGAAACAGTTATTGACTTCTCGTTTGTTTGTCTATTCAGATTTACTAAAAGCCATTATTGTTGAATCAATTTTCATTACAACAGTACGCTATTTTACATTGAAAGCGCATGGTTGGATTATTCAAATTTTGTGCTGTTTATGTGGACAGGTAATGTTAGAACATACAAAGCAACTCGAATATCATCGCGATGGATAGTCAAAAACTGTTTTGAGCATACCCAAAGGAAAGAGATTACAATTGTTTTAAGAGACAATGAAGTTATTGATGCCTCTTTTTCCCATCTCTCAGTTGTGAATTAATACCTGTCTCGCCCTAATTAATGTACATAATGTGTTTTTCTATTTCCCTTATATTTCACCATTTTTTTCTCCTTTAATTAGCATGATAGAAAGTTGAATTCATATTATCTCCAACTCATTTTGTTTTGTTTCATAAATTTCATATCAAACCCAAATTTGTATAAAAAGTGGCCTACCAAGCAATATTTAAAGTCAGGATTAACGTTGGCCTGTTTAAATTATTAAGGTTGTATTTGATTACTATTTCATTTTTTGTATTCTAAAATTAAGTATACATATATTTCTTTCCCTTTTAAATCTCTTACTTTGATAACCTGTATTTTCAAAATCCAAGATAAATTTGAAAACTAATTTTTTTTAAAATGCTTTGCTTTTAAAAAAAAAATTAAAGTAACAACAAACTATTATTGATACAAACAATAAAAAAAAATTACCAAACGAACTATAAAAAATTGAAAGATTATAAATTGAGATCTTAATTATCTGCCTTTTAAAAAATTGACGAGTTAAAAAAATTATATATATGTATAGTAACATTTGTCTTTTACATGCCAAAAATCTCATTATCATTTATCTCTAACCAAAATGAATCAAAACTAAGCCTCACAAAAAAGTGAAGAATGTCGAGTGTATCTAATTCTTTAATTATAACTCATCAAGTGGTAAGAAAAGATGCACAAAGGAAACTGATGTTGGATATGAATAGAATTGGAGGAAGATATAAGATAACACGTGGAGTGATTATATTGGAAGTATGGTAGCGCTTTAGGCAGTTTCCAAGCTCTTCCAGAGGCTTCTTCCACTCTCCCACTTTGCCTTTGAAACAAAGCTTCCCCTCCCTTTAAAACTCACCGAAAATTTCTTCATTCTTCACATATACAAGAAGGAAGAGAGAAATTGGAGACACTGGGGTTTGTACATGTCCTACCTTCTACCTCATTTGCATTCTGGATGGGCTGTGGATCAAGCCATTCTCGCTGAAGAAGAACGTGTCGTCATCATCCGTTTCGGCCATGATTGGGACGACACTTGTATGCAGGTAATTGTAAACTTCATTTTTCAATCCCTAACTCTTCTACTTCTTCTCTCCGTTTCACTTTTGTTGTGCTCACTGTGTTTGCTCATCCAAAAACCGAGGAGGAGGAGAAAAAAAAAATTGTTTCATTGCGGTTAAATTATTATTTTCTTTGTATTCATTCCATTTTTAGTTTTTAGTTCAAGTTCGTATTTTAATTTGACTGAAAAACATGTTTCCTAAATTCATTATAATCACGAGAACTAATAATTGTATAAATTTTGTAAATGTGTCAATTTAAACCCTTCTCTACGTGACTAATATTGACTTAATTAAACTCTGAAGTTTTCATAAGTCTATTAATTTAGATCTTTCATTAGCATTACTTTTGAAAATCATCTACCATTCATGTTTAAATGGATCGACTTCTTCAAATGCTAGATTTTCGAAATGAATGATTAGGTAATTGATAGTTTTACCCACGATTTTTCCAGATTGAGTGTAATAGACGGTGTAAATTGACACACTTAGATTTTAATTGGTACAACTTCTAAAGTCTTCTAAAGTCTAGGAGACTAAATTTTTATTTTTTTTCAACTTCTTATTGAAAAAAAAAAATCTCAACCAAATTACTTTAGAAAGTAAAGAGACCAAGTTTAGTTCTAAGCTCAGTTTGTTTTATGCTCGTTTGTGTTTTACATCTAATTTTCTGTTTAATATGTTGTTAGAATCTAAAATCGGTCTGGCTTCTATTTCCATTTCAATTTTGTATGAAATAGACTATGTAATTTTTAATTTTTCTTTTAAATTGTCTTTGATTTTTTAATATTTTCTTTAGCATTCATGTTTAAATTTTTACTAAATATGAAAATTTAAATTTATATCTACTAGATTAGTTATTTGTTTTTAAAAATAAATTTGAATACATGTGGAACATGTTGTTTAACTGCGAGTTAAAATTGTTGACTAAATTACTGGTGAATAGGAATAAAACAGACTGAAGAAACCCTGGAGCCCATTTTCCGTCCTTCAAACAACCTCCTATGATTTGGGCCGAAGATTTGTTTGTGTATATCGCTCTCTCAACTTCCTTTTTCTTCTTCTTGCTTTTACTGCAACTGAATTTGTACTTTAATGTCTTTTCATTTCACAAAACAAGTCACTTTTTTTTTAGTTCTTCAAGTTTTGATGTCTTGGTTGGTTTGTGTTTTTCTTGTTCCCTTCTTTCTTTTTGTTTTTTTCTCATCTGAGTTAGAGCTTTGAACATTCACTGCTTGAATTGATCAGACTTCTTAACTTGAACATGTGTAAAATTCCAATTTTTTGGGCAGTTCTAGTGGTTCTATGTTAGATTTCATACCTTTCTTTGAGTTTCCATTTATCTCTTAGGTCTTATTTTGTTTAACTAGGGCCCTTCTTAGAGTTGCTGAACTTTTCTTGGGTCGTATTATTCCAATTATTCTTAATGGAGGCTTAGCGTTTTGTTTTGTTTTATTTTTTGAAAAACCTTCTTCTATTCATTTGTAATTTGTCCCATCTCCTTGTTGCCTGTGTTCACTTCTCTGTTATCTTCCGTTGTAAGTATGATTCTTTATCATTTTTCAAGATGCTTAATCTGATTGATATGTTTTTTGATGTAGATGGATGAAGTGTTGGCCTCAGTTGCAGAGACAATTAAGAACTTTGCAGTAATATACCTTGTGGATATCACAGAAGTTCCTGATTTCAACACAATGTATGAATTGTATGATCCTTCCACCGTCATGTTCTTCTTTAGGAACAAGCACATAATGATTGATCTTGGTACTGGAAACAACAATAAAATAAATTGGGCACTCAAGGATAAACAAGAGTTCATTGATATTATTGAAACAGTTTATCGTGGAGCAAGGAAAGGACGTGGTTTAGTCATTGCACCTAAGGATTATTCAACCAAATATCGCTACTAA

mRNA sequence

ATGGAGTTCGTAACCCCCGAAGGACTTCGCCAAGACGGTCGCCGTCCCAGGGAGCTGAGGGAAATGCGTGCGGAAATTGGGGCTGTTTCTAAAGCAAATGGGTCTGCTGTTTTTGAGATGGGTAACACCAAAGTTCTTGCTGCTGTATATGGTCCTAGAGAGGTCCAGAATAAGAGTCAGCAAATGAGCAACCAAGCACTGGTTCGTTGTGAGTACACCATGGCTAATTTCAGTACTGGAGATCGCATGAGAAAGCCCAAGGGAGACAGGCGGTCTACAGAGATATCTTTAGTTATTCGCCAGACAATGGAGGAATGCATTCTAACACATTTAATGCCTCGATCTCAGATAGATATTTTTGTCCAAGTTCTTCAAGCAGATGGAGGTACCAGATCAGCATGCATAAATGCTGCAACTCTGGCGCTTGCTGATGCTGGAATTCCAATGCGTGATATTGTTACTTCCTGCAGTGCTGGATACCTTAATAGCAATGCTTTGCTTGATTTGAATTATGTAGAGGATAGTGCTGGAGGCCCTGATGTCACTGTAGGCTTTCTACCTAAGATGGATAAAGTTACTCTTCTACAGATGGATGCTAAATTACCCATTGATGTATTTGAGGATGTGATGGAACTTGCAATTGAGGGCTGCAAAGCCATAGCTACTTACATTCGAAAAGCAGTTTCCAAGCTCTTCCAGAGGCTTCTTCCACTCTCCCACTTTGCCTTTGAAACAAAGCTTCCCCTCCCTTTAAAACTCACCGAAAATTTCTTCATTCTTCACATATACAAGAAGGAAGAGAGAAATTGGAGACACTGGGGTTTGTACATGTCCTACCTTCTACCTCATTTGCATTCTGGATGGGCTGTGGATCAAGCCATTCTCGCTGAAGAAGAACGTGTCGTCATCATCCGTTTCGGCCATGATTGGGACGACACTTGTATGCAGATGGATGAAGTGTTGGCCTCAGTTGCAGAGACAATTAAGAACTTTGCAGTAATATACCTTGTGGATATCACAGAAGTTCCTGATTTCAACACAATGTATGAATTGTATGATCCTTCCACCGTCATGTTCTTCTTTAGGAACAAGCACATAATGATTGATCTTGGTACTGGAAACAACAATAAAATAAATTGGGCACTCAAGGATAAACAAGAGTTCATTGATATTATTGAAACAGTTTATCGTGGAGCAAGGAAAGGACGTGGTTTAGTCATTGCACCTAAGGATTATTCAACCAAATATCGCTACTAA

Coding sequence (CDS)

ATGGAGTTCGTAACCCCCGAAGGACTTCGCCAAGACGGTCGCCGTCCCAGGGAGCTGAGGGAAATGCGTGCGGAAATTGGGGCTGTTTCTAAAGCAAATGGGTCTGCTGTTTTTGAGATGGGTAACACCAAAGTTCTTGCTGCTGTATATGGTCCTAGAGAGGTCCAGAATAAGAGTCAGCAAATGAGCAACCAAGCACTGGTTCGTTGTGAGTACACCATGGCTAATTTCAGTACTGGAGATCGCATGAGAAAGCCCAAGGGAGACAGGCGGTCTACAGAGATATCTTTAGTTATTCGCCAGACAATGGAGGAATGCATTCTAACACATTTAATGCCTCGATCTCAGATAGATATTTTTGTCCAAGTTCTTCAAGCAGATGGAGGTACCAGATCAGCATGCATAAATGCTGCAACTCTGGCGCTTGCTGATGCTGGAATTCCAATGCGTGATATTGTTACTTCCTGCAGTGCTGGATACCTTAATAGCAATGCTTTGCTTGATTTGAATTATGTAGAGGATAGTGCTGGAGGCCCTGATGTCACTGTAGGCTTTCTACCTAAGATGGATAAAGTTACTCTTCTACAGATGGATGCTAAATTACCCATTGATGTATTTGAGGATGTGATGGAACTTGCAATTGAGGGCTGCAAAGCCATAGCTACTTACATTCGAAAAGCAGTTTCCAAGCTCTTCCAGAGGCTTCTTCCACTCTCCCACTTTGCCTTTGAAACAAAGCTTCCCCTCCCTTTAAAACTCACCGAAAATTTCTTCATTCTTCACATATACAAGAAGGAAGAGAGAAATTGGAGACACTGGGGTTTGTACATGTCCTACCTTCTACCTCATTTGCATTCTGGATGGGCTGTGGATCAAGCCATTCTCGCTGAAGAAGAACGTGTCGTCATCATCCGTTTCGGCCATGATTGGGACGACACTTGTATGCAGATGGATGAAGTGTTGGCCTCAGTTGCAGAGACAATTAAGAACTTTGCAGTAATATACCTTGTGGATATCACAGAAGTTCCTGATTTCAACACAATGTATGAATTGTATGATCCTTCCACCGTCATGTTCTTCTTTAGGAACAAGCACATAATGATTGATCTTGGTACTGGAAACAACAATAAAATAAATTGGGCACTCAAGGATAAACAAGAGTTCATTGATATTATTGAAACAGTTTATCGTGGAGCAAGGAAAGGACGTGGTTTAGTCATTGCACCTAAGGATTATTCAACCAAATATCGCTACTAA

Protein sequence

MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKMDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRKAVSKLFQRLLPLSHFAFETKLPLPLKLTENFFILHIYKKEERNWRHWGLYMSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY*
Homology
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BLAST of Chy10G178380 vs. ExPASy Swiss-Prot
Match: Q9SP08 (Exosome complex component RRP41 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP41 PE=1 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 4.6e-92
Identity = 178/236 (75.42%), Postives = 201/236 (85.17%), Query Frame = 0 

Query: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ 60
           ME+V PEGLR DGRR  E+R++ AE+G VSKA+GSAVFEMGNTKV+AAVYGPRE+QNKSQ
Sbjct: 1   MEYVNPEGLRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQ 60

Query: 61  QMSN-QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDI 120
           Q  N  A+V CEY+MA FSTGDR R+ K DRRSTE+SLVIRQTME CILT LMP SQIDI
Sbjct: 61  QKKNDHAVVLCEYSMAQFSTGDR-RRQKFDRRSTELSLVIRQTMEACILTELMPHSQIDI 120

Query: 121 FVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGP 180
           F+QVLQADGGTRSACINAATLALADAGIPMRD+  SCSAGYLNS  LLDLNYVEDSAGG 
Sbjct: 121 FLQVLQADGGTRSACINAATLALADAGIPMRDLAVSCSAGYLNSTPLLDLNYVEDSAGGA 180

Query: 181 DVTVGFLPKMDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRKAVSKLFQRL 236
           DVTVG LPK+DKV+LLQMDAKLP++ FE V  LA EGCKAIA  IR+ + +  ++L
Sbjct: 181 DVTVGILPKLDKVSLLQMDAKLPMETFETVFALASEGCKAIAERIREVLQENTKQL 235

[Close]
BLAST of Chy10G178380 vs. ExPASy Swiss-Prot
Match: Q9FE62 (Thioredoxin-like protein YLS8 OS=Arabidopsis thaliana OX=3702 GN=YLS8 PE=1 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 3.8e-78
Identity = 138/142 (97.18%), Postives = 142/142 (100.00%), Query Frame = 0 

Query: 277 MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 336
           MSYLLPHLHSGWAVDQ+ILAEEER+V+IRFGHDWD+TCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 337 VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 396
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 397 RGARKGRGLVIAPKDYSTKYRY 419
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]
BLAST of Chy10G178380 vs. ExPASy Swiss-Prot
Match: P83876 (Thioredoxin-like protein 4A OS=Homo sapiens OX=9606 GN=TXNL4A PE=1 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 2.6e-71
Identity = 122/142 (85.92%), Postives = 135/142 (95.07%), Query Frame = 0 

Query: 277 MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 336
           MSY+LPHLH+GW VDQAIL+EE+RVV+IRFGHDWD TCM+MDEVL S+AE +KNFAVIYL
Sbjct: 1   MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYL 60

Query: 337 VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 396
           VDITEVPDFN MYELYDP TVMFFFRNKHIMIDLGTGNNNKINWA++DKQE +DIIETVY
Sbjct: 61  VDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVY 120

Query: 397 RGARKGRGLVIAPKDYSTKYRY 419
           RGARKGRGLV++PKDYSTKYRY
Sbjct: 121 RGARKGRGLVVSPKDYSTKYRY 142

[Close]
BLAST of Chy10G178380 vs. ExPASy Swiss-Prot
Match: P83877 (Thioredoxin-like protein 4A OS=Mus musculus OX=10090 GN=Txnl4a PE=1 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 2.6e-71
Identity = 122/142 (85.92%), Postives = 135/142 (95.07%), Query Frame = 0 

Query: 277 MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 336
           MSY+LPHLH+GW VDQAIL+EE+RVV+IRFGHDWD TCM+MDEVL S+AE +KNFAVIYL
Sbjct: 1   MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYL 60

Query: 337 VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 396
           VDITEVPDFN MYELYDP TVMFFFRNKHIMIDLGTGNNNKINWA++DKQE +DIIETVY
Sbjct: 61  VDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVY 120

Query: 397 RGARKGRGLVIAPKDYSTKYRY 419
           RGARKGRGLV++PKDYSTKYRY
Sbjct: 121 RGARKGRGLVVSPKDYSTKYRY 142

[Close]
BLAST of Chy10G178380 vs. ExPASy Swiss-Prot
Match: Q7YRA3 (Exosome complex component RRP41 OS=Bos taurus OX=9913 GN=EXOSC4 PE=2 SV=3)

HSP 1 Score: 239.2 bits (609), Expect = 8.4e-62
Identity = 119/234 (50.85%), Postives = 170/234 (72.65%), Query Frame = 0 

Query: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQ-NKS 60
           +E ++ +G R DGRR  ELR+++A +G  ++A+GSA  E GNTK LA VYGP E++ +++
Sbjct: 4   LELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRA 63

Query: 61  QQMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDI 120
           + + ++ALV C+Y+ A FSTG+R R+P GDR+S E+ L +RQT E  ILT L PRSQIDI
Sbjct: 64  RALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDI 123

Query: 121 FVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGP 180
           +VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++  AL DL++VE++AGGP
Sbjct: 124 YVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGP 183

Query: 181 DVTVGFLPKMDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRKAVSKLFQ 234
            + +  LP   ++ LL+MDA+L  D  E V+E A    + + T + + V +  Q
Sbjct: 184 QLALALLPASGQIALLEMDARLHEDHLEQVLEAAARASRDVHTVLDRVVRQHVQ 237

[Close]
BLAST of Chy10G178380 vs. ExPASy TrEMBL
Match: A0A0A0KNI9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G175730 PE=4 SV=1)

HSP 1 Score: 438.3 bits (1126), Expect = 3.5e-119
Identity = 224/228 (98.25%), Postives = 226/228 (99.12%), Query Frame = 0 

Query: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ 60
           MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ
Sbjct: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF
Sbjct: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120

Query: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPD 180
           VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPD
Sbjct: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPD 180

Query: 181 VTVGFLPKMDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRKAV 229
           VTVGFLPK+DKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIR  +
Sbjct: 181 VTVGFLPKLDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRNVM 228

[Close]
BLAST of Chy10G178380 vs. ExPASy TrEMBL
Match: A0A1S3BDQ6 (exosome complex component RRP41 homolog OS=Cucumis melo OX=3656 GN=LOC103488765 PE=4 SV=1)

HSP 1 Score: 435.3 bits (1118), Expect = 3.0e-118
Identity = 222/228 (97.37%), Postives = 226/228 (99.12%), Query Frame = 0 

Query: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ 60
           MEFVTPEGLR DGRRPRELREMRAEIGAVSKANGSA+FEMGNTKVLAAVYGPREVQN+SQ
Sbjct: 1   MEFVTPEGLRLDGRRPRELREMRAEIGAVSKANGSALFEMGNTKVLAAVYGPREVQNRSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF
Sbjct: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120

Query: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPD 180
           VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPD
Sbjct: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPD 180

Query: 181 VTVGFLPKMDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRKAV 229
           VTVGFLPK+DKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRK +
Sbjct: 181 VTVGFLPKLDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRKVM 228

[Close]
BLAST of Chy10G178380 vs. ExPASy TrEMBL
Match: A0A6J1JKC7 (exosome complex component RRP41 homolog OS=Cucurbita maxima OX=3661 GN=LOC111485363 PE=4 SV=1)

HSP 1 Score: 413.7 bits (1062), Expect = 9.2e-112
Identity = 207/235 (88.09%), Postives = 226/235 (96.17%), Query Frame = 0 

Query: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ 60
           MEFV+PEGLR DGRRP E+R++RAEIGAVSKA+GSA+FEMGNTKVLAAVYGPREVQN+SQ
Sbjct: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF
Sbjct: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120

Query: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPD 180
           VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNS  LLDLNYVEDSAGGPD
Sbjct: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180

Query: 181 VTVGFLPKMDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRKAVSKLFQRL 236
           VTVGFLPK+DKVTLLQMD+KLP+D+FE+VM+LAIEGCKA+A YIR+ + +  ++L
Sbjct: 181 VTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAVANYIREVMLESTKKL 235

[Close]
BLAST of Chy10G178380 vs. ExPASy TrEMBL
Match: A0A6J1FNX1 (exosome complex component RRP41 homolog OS=Cucurbita moschata OX=3662 GN=LOC111446911 PE=4 SV=1)

HSP 1 Score: 413.7 bits (1062), Expect = 9.2e-112
Identity = 207/235 (88.09%), Postives = 226/235 (96.17%), Query Frame = 0 

Query: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ 60
           MEFV+PEGLR DGRRP E+R++RAEIGAVSKA+GSA+FEMGNTKVLAAVYGPREVQN+SQ
Sbjct: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF
Sbjct: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120

Query: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPD 180
           VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNS  LLDLNYVEDSAGGPD
Sbjct: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180

Query: 181 VTVGFLPKMDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRKAVSKLFQRL 236
           VTVGFLPK+DKVTLLQMD+KLP+D+FE+VM+LAIEGCKA+A YIR+ + +  ++L
Sbjct: 181 VTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAVANYIREVMLESTKKL 235

[Close]
BLAST of Chy10G178380 vs. ExPASy TrEMBL
Match: A0A6J1DWZ5 (exosome complex component RRP41 homolog OS=Momordica charantia OX=3673 GN=LOC111024273 PE=4 SV=1)

HSP 1 Score: 409.1 bits (1050), Expect = 2.3e-110
Identity = 205/235 (87.23%), Postives = 226/235 (96.17%), Query Frame = 0 

Query: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ 60
           MEFV+PEGLR DGRRP E+R++R EIGAVSKA+GSAVFEMGNTKV+AAVYGPREVQN+SQ
Sbjct: 1   MEFVSPEGLRFDGRRPMEMRQIRXEIGAVSKADGSAVFEMGNTKVIAAVYGPREVQNRSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           Q+S+QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF
Sbjct: 61  QLSDQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120

Query: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPD 180
           +QVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNS  LLDLNYVEDSAGGPD
Sbjct: 121 LQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180

Query: 181 VTVGFLPKMDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRKAVSKLFQRL 236
           VTVGFLPK+DKVTLLQMDAKLPID+FE+VM+LAIEGCKA+A+YIR+ + +  ++L
Sbjct: 181 VTVGFLPKLDKVTLLQMDAKLPIDIFENVMQLAIEGCKAVASYIREVMLENTKKL 235

[Close]
BLAST of Chy10G178380 vs. NCBI nr
Match: XP_004143616.1 (exosome complex component RRP41 homolog [Cucumis sativus] >KGN50449.1 hypothetical protein Csa_000356 [Cucumis sativus])

HSP 1 Score: 437 bits (1123), Expect = 9.14e-151
Identity = 224/228 (98.25%), Postives = 226/228 (99.12%), Query Frame = 0 

Query: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ 60
           MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ
Sbjct: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF
Sbjct: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120

Query: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPD 180
           VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPD
Sbjct: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPD 180

Query: 181 VTVGFLPKMDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRKAV 228
           VTVGFLPK+DKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIR  +
Sbjct: 181 VTVGFLPKLDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRNVM 228

[Close]
BLAST of Chy10G178380 vs. NCBI nr
Match: XP_008445878.1 (PREDICTED: exosome complex component RRP41 homolog [Cucumis melo])

HSP 1 Score: 434 bits (1115), Expect = 1.50e-149
Identity = 222/228 (97.37%), Postives = 226/228 (99.12%), Query Frame = 0 

Query: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ 60
           MEFVTPEGLR DGRRPRELREMRAEIGAVSKANGSA+FEMGNTKVLAAVYGPREVQN+SQ
Sbjct: 1   MEFVTPEGLRLDGRRPRELREMRAEIGAVSKANGSALFEMGNTKVLAAVYGPREVQNRSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF
Sbjct: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120

Query: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPD 180
           VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPD
Sbjct: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPD 180

Query: 181 VTVGFLPKMDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRKAV 228
           VTVGFLPK+DKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRK +
Sbjct: 181 VTVGFLPKLDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRKVM 228

[Close]
BLAST of Chy10G178380 vs. NCBI nr
Match: XP_038891797.1 (exosome complex component RRP41 homolog [Benincasa hispida])

HSP 1 Score: 417 bits (1072), Expect = 5.13e-143
Identity = 212/228 (92.98%), Postives = 223/228 (97.81%), Query Frame = 0 

Query: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ 60
           MEFV+PEGLR DGRRP E+R++RAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQN+SQ
Sbjct: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNRSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF
Sbjct: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120

Query: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPD 180
           VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNS  LLDLNYVEDSAGGPD
Sbjct: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180

Query: 181 VTVGFLPKMDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRKAV 228
           VTVGFLPK+DKVTLLQMDAKLPIDVFE+VM+LAIEGCKAIA+YIR+ +
Sbjct: 181 VTVGFLPKLDKVTLLQMDAKLPIDVFENVMQLAIEGCKAIASYIREVM 228

[Close]
BLAST of Chy10G178380 vs. NCBI nr
Match: XP_022941604.1 (exosome complex component RRP41 homolog [Cucurbita moschata] >XP_022987989.1 exosome complex component RRP41 homolog [Cucurbita maxima] >XP_022987997.1 exosome complex component RRP41 homolog [Cucurbita maxima] >XP_023513826.1 exosome complex component RRP41 homolog [Cucurbita pepo subsp. pepo] >KAG6600116.1 Exosome complex component RRP41-like protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030788.1 Exosome complex component RRP41-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 411 bits (1057), Expect = 9.75e-141
Identity = 206/228 (90.35%), Postives = 222/228 (97.37%), Query Frame = 0 

Query: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ 60
           MEFV+PEGLR DGRRP E+R++RAEIGAVSKA+GSA+FEMGNTKVLAAVYGPREVQN+SQ
Sbjct: 1   MEFVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSALFEMGNTKVLAAVYGPREVQNRSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF
Sbjct: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120

Query: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPD 180
           VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNS  LLDLNYVEDSAGGPD
Sbjct: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180

Query: 181 VTVGFLPKMDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRKAV 228
           VTVGFLPK+DKVTLLQMD+KLP+D+FE+VM+LAIEGCKA+A YIR+ +
Sbjct: 181 VTVGFLPKLDKVTLLQMDSKLPVDIFENVMQLAIEGCKAVANYIREVM 228

[Close]
BLAST of Chy10G178380 vs. NCBI nr
Match: XP_022157614.1 (exosome complex component RRP41 homolog [Momordica charantia])

HSP 1 Score: 407 bits (1046), Expect = 4.56e-139
Identity = 204/228 (89.47%), Postives = 222/228 (97.37%), Query Frame = 0 

Query: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ 60
           MEFV+PEGLR DGRRP E+R++R EIGAVSKA+GSAVFEMGNTKV+AAVYGPREVQN+SQ
Sbjct: 1   MEFVSPEGLRFDGRRPMEMRQIRXEIGAVSKADGSAVFEMGNTKVIAAVYGPREVQNRSQ 60

Query: 61  QMSNQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120
           Q+S+QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF
Sbjct: 61  QLSDQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIF 120

Query: 121 VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPD 180
           +QVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNS  LLDLNYVEDSAGGPD
Sbjct: 121 LQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180

Query: 181 VTVGFLPKMDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRKAV 228
           VTVGFLPK+DKVTLLQMDAKLPID+FE+VM+LAIEGCKA+A+YIR+ +
Sbjct: 181 VTVGFLPKLDKVTLLQMDAKLPIDIFENVMQLAIEGCKAVASYIREVM 228

[Close]
BLAST of Chy10G178380 vs. TAIR 10
Match: AT3G61620.1 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 339.7 bits (870), Expect = 3.3e-93
Identity = 178/236 (75.42%), Postives = 201/236 (85.17%), Query Frame = 0 

Query: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ 60
           ME+V PEGLR DGRR  E+R++ AE+G VSKA+GSAVFEMGNTKV+AAVYGPRE+QNKSQ
Sbjct: 1   MEYVNPEGLRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQ 60

Query: 61  QMSN-QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDI 120
           Q  N  A+V CEY+MA FSTGDR R+ K DRRSTE+SLVIRQTME CILT LMP SQIDI
Sbjct: 61  QKKNDHAVVLCEYSMAQFSTGDR-RRQKFDRRSTELSLVIRQTMEACILTELMPHSQIDI 120

Query: 121 FVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGP 180
           F+QVLQADGGTRSACINAATLALADAGIPMRD+  SCSAGYLNS  LLDLNYVEDSAGG 
Sbjct: 121 FLQVLQADGGTRSACINAATLALADAGIPMRDLAVSCSAGYLNSTPLLDLNYVEDSAGGA 180

Query: 181 DVTVGFLPKMDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRKAVSKLFQRL 236
           DVTVG LPK+DKV+LLQMDAKLP++ FE V  LA EGCKAIA  IR+ + +  ++L
Sbjct: 181 DVTVGILPKLDKVSLLQMDAKLPMETFETVFALASEGCKAIAERIREVLQENTKQL 235

[Close]
BLAST of Chy10G178380 vs. TAIR 10
Match: AT3G61620.2 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 339.7 bits (870), Expect = 3.3e-93
Identity = 178/236 (75.42%), Postives = 201/236 (85.17%), Query Frame = 0 

Query: 1   MEFVTPEGLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQ 60
           ME+V PEGLR DGRR  E+R++ AE+G VSKA+GSAVFEMGNTKV+AAVYGPRE+QNKSQ
Sbjct: 1   MEYVNPEGLRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQ 60

Query: 61  QMSN-QALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDI 120
           Q  N  A+V CEY+MA FSTGDR R+ K DRRSTE+SLVIRQTME CILT LMP SQIDI
Sbjct: 61  QKKNDHAVVLCEYSMAQFSTGDR-RRQKFDRRSTELSLVIRQTMEACILTELMPHSQIDI 120

Query: 121 FVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGP 180
           F+QVLQADGGTRSACINAATLALADAGIPMRD+  SCSAGYLNS  LLDLNYVEDSAGG 
Sbjct: 121 FLQVLQADGGTRSACINAATLALADAGIPMRDLAVSCSAGYLNSTPLLDLNYVEDSAGGA 180

Query: 181 DVTVGFLPKMDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRKAVSKLFQRL 236
           DVTVG LPK+DKV+LLQMDAKLP++ FE V  LA EGCKAIA  IR+ + +  ++L
Sbjct: 181 DVTVGILPKLDKVSLLQMDAKLPMETFETVFALASEGCKAIAERIREVLQENTKQL 235

[Close]
BLAST of Chy10G178380 vs. TAIR 10
Match: AT5G08290.1 (mRNA splicing factor, thioredoxin-like U5 snRNP )

HSP 1 Score: 293.5 bits (750), Expect = 2.7e-79
Identity = 138/142 (97.18%), Postives = 142/142 (100.00%), Query Frame = 0 

Query: 277 MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 336
           MSYLLPHLHSGWAVDQ+ILAEEER+V+IRFGHDWD+TCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 337 VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 396
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 397 RGARKGRGLVIAPKDYSTKYRY 419
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]
BLAST of Chy10G178380 vs. TAIR 10
Match: AT4G27490.1 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 98.6 bits (244), Expect = 1.3e-20
Identity = 62/221 (28.05%), Postives = 110/221 (49.77%), Query Frame = 0 

Query: 10  RQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQQMSNQALVR 69
           R DGR   + R    + GAVS A+GSA  E GNTKV+ +V+GPRE   K+   S+   + 
Sbjct: 34  RPDGRGFHQCRPALLQTGAVSSASGSAYAEFGNTKVIVSVFGPRE-SKKAMVYSDVGRLN 93

Query: 70  CEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIFVQVLQADGG 129
           C  +  NF++    +         E S ++ + +E  I+    P++ +D+F  VL++ G 
Sbjct: 94  CNVSYTNFASPTLGQ----GTDHKEYSSMLHKALEGVIMMETFPKTTVDVFALVLESGGS 153

Query: 130 TRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLPKM 189
             S  I+ A+LALADAGI M D++T+ S   +  + ++D    E+        +  +P  
Sbjct: 154 DLSVLISCASLALADAGIMMYDLITAVSVSCIGKSLMIDPVTEEEGCEDGSFMMTCMPSR 213

Query: 190 DKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRKAVSK 231
            ++T L +  +       + M+L ++    +   +R  + +
Sbjct: 214 YEITQLTITGEWTTPNINEAMQLCLDASSKLGEIMRDCLKQ 249

[Close]
BLAST of Chy10G178380 vs. TAIR 10
Match: AT3G24730.1 (mRNA splicing factor, thioredoxin-like U5 snRNP )

HSP 1 Score: 95.5 bits (236), Expect = 1.1e-19
Identity = 52/137 (37.96%), Postives = 78/137 (56.93%), Query Frame = 0 

Query: 277 MSYLLPHLHSGWAVDQAILAEEERVVIIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 336
           MSYLL  L +   +D+ I    + V+++RFG   D  C+Q DE+LA     +  FA + L
Sbjct: 9   MSYLLKTLTTKEEIDRVIRDTIDEVLVLRFGRSSDAVCLQHDEILAKSVRDVSKFAKVAL 68

Query: 337 VDITEVPDFNTMYELYD----PSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDII 396
           VD+ +  D     + +D    PST+ FFF   H+ +D GT ++ K   A   KQ+FID++
Sbjct: 69  VDV-DSEDVQVYVKYFDITLFPSTI-FFFNAHHMKLDSGTADHTKWVGAFHIKQDFIDVV 128

Query: 397 ETVYRGARKGRGLVIAP 410
           E +YRGA KG+ +V  P
Sbjct: 129 EAIYRGAMKGKMIVQCP 143

The following BLAST results are available for this feature:
BLAST of Chy10G178380 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SP084.6e-9275.42Exosome complex component RRP41 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP41... [more]
Q9FE623.8e-7897.18Thioredoxin-like protein YLS8 OS=Arabidopsis thaliana OX=3702 GN=YLS8 PE=1 SV=1[more]
P838762.6e-7185.92Thioredoxin-like protein 4A OS=Homo sapiens OX=9606 GN=TXNL4A PE=1 SV=1[more]
P838772.6e-7185.92Thioredoxin-like protein 4A OS=Mus musculus OX=10090 GN=Txnl4a PE=1 SV=1[more]
Q7YRA38.4e-6250.85Exosome complex component RRP41 OS=Bos taurus OX=9913 GN=EXOSC4 PE=2 SV=3[more]
BLAST of Chy10G178380 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KNI93.5e-11998.25Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G175730 PE=4 SV=1[more]
A0A1S3BDQ63.0e-11897.37exosome complex component RRP41 homolog OS=Cucumis melo OX=3656 GN=LOC103488765 ... [more]
A0A6J1JKC79.2e-11288.09exosome complex component RRP41 homolog OS=Cucurbita maxima OX=3661 GN=LOC111485... [more]
A0A6J1FNX19.2e-11288.09exosome complex component RRP41 homolog OS=Cucurbita moschata OX=3662 GN=LOC1114... [more]
A0A6J1DWZ52.3e-11087.23exosome complex component RRP41 homolog OS=Momordica charantia OX=3673 GN=LOC111... [more]
BLAST of Chy10G178380 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004143616.19.14e-15198.25exosome complex component RRP41 homolog [Cucumis sativus] >KGN50449.1 hypothetic... [more]
XP_008445878.11.50e-14997.37PREDICTED: exosome complex component RRP41 homolog [Cucumis melo][more]
XP_038891797.15.13e-14392.98exosome complex component RRP41 homolog [Benincasa hispida][more]
XP_022941604.19.75e-14190.35exosome complex component RRP41 homolog [Cucurbita moschata] >XP_022987989.1 exo... [more]
XP_022157614.14.56e-13989.47exosome complex component RRP41 homolog [Momordica charantia][more]
BLAST of Chy10G178380 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G61620.13.3e-9375.423'-5'-exoribonuclease family protein [more]
AT3G61620.23.3e-9375.423'-5'-exoribonuclease family protein [more]
AT5G08290.12.7e-7997.18mRNA splicing factor, thioredoxin-like U5 snRNP [more]
AT4G27490.11.3e-2028.053'-5'-exoribonuclease family protein [more]
AT3G24730.11.1e-1937.96mRNA splicing factor, thioredoxin-like U5 snRNP [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004123Dim1 familySMARTSM01410DIM1_2coord: 280..412
e-value: 6.8E-97
score: 337.9
IPR004123Dim1 familyPFAMPF02966DIM1coord: 280..412
e-value: 9.6E-66
score: 219.6
IPR004123Dim1 familyCDDcd02954DIM1coord: 286..399
e-value: 2.4029E-76
score: 231.03
IPR001247Exoribonuclease, phosphorolytic domain 1PFAMPF01138RNase_PHcoord: 18..148
e-value: 8.9E-38
score: 129.8
NoneNo IPR availableGENE3D3.40.30.10Glutaredoxincoord: 276..417
e-value: 9.7E-78
score: 260.6
NoneNo IPR availablePANTHERPTHR11953EXOSOME COMPLEX COMPONENTcoord: 1..234
NoneNo IPR availablePANTHERPTHR11953:SF0EXOSOME COMPLEX COMPONENT RRP41coord: 1..234
NoneNo IPR availableCDDcd11370RNase_PH_RRP41coord: 8..228
e-value: 1.93906E-141
score: 400.766
IPR027408PNPase/RNase PH domain superfamilyGENE3D3.30.230.70coord: 1..236
e-value: 7.5E-80
score: 269.8
IPR015847Exoribonuclease, phosphorolytic domain 2PFAMPF03725RNase_PH_Ccoord: 151..215
e-value: 1.6E-6
score: 28.0
IPR036249Thioredoxin-like superfamilySUPERFAMILY52833Thioredoxin-likecoord: 280..413
IPR036345Exoribonuclease, PH domain 2 superfamilySUPERFAMILY55666Ribonuclease PH domain 2-likecoord: 148..234
IPR020568Ribosomal protein S5 domain 2-type foldSUPERFAMILY54211Ribosomal protein S5 domain 2-likecoord: 6..175

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy10G178380.1Chy10G178380.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0071028 nuclear mRNA surveillance
biological_process GO:0034427 nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0071051 polyadenylation-dependent snoRNA 3'-end processing
biological_process GO:0016075 rRNA catabolic process
biological_process GO:0034475 U4 snRNA 3'-end processing
cellular_component GO:0000177 cytoplasmic exosome (RNase complex)
cellular_component GO:0000176 nuclear exosome (RNase complex)
cellular_component GO:0005730 nucleolus
cellular_component GO:0046540 U4/U6 x U5 tri-snRNP complex
molecular_function GO:0004527 exonuclease activity
molecular_function GO:0009022 tRNA nucleotidyltransferase activity