Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AGATCGAACAACACAAGACTTCGTGATGTTGCAGATGATCCACAAAAAATCCTTGATATATGTAATAATAATGAGAGGTACATGGAGCAGATACATAATATGTACGATCTACCTATTGTACCTCTACCAGTTCATAGGGGACGTGTTCGAGTGGAAGAAGCTGAACTCGATGAAGTTTTCCATAATGTGGAAGAAGTGCCTTCTATGACATAGACACAGAGCCAAACTGGTTATGGTACTCCAATGATGATGATGCCAACATTTGGAGCAGGATATTGTGATTCTAAGGTCGGCAGGAAATTATGATTCAAGGTCGGTCCATCATCTTCATACATGGATGTCGGTCCATCAACTTCTTACTTGCATGGACACAGACGTGGCCATGGAGAACATAACAAATATATGTATTATGAAGCAGTACTTGTAGAGGTATTAGATCGACAA
mRNA sequence
AGATCGAACAACACAAGACTTCGTGATGTTGCAGATGATCCACAAAAAATCCTTGATATATGTAATAATAATGAGAGGTACATGGAGCAGATACATAATATGTACGATCTACCTATTGTACCTCTACCAGTTCATAGGGGACGTGTTCGAGTGGAAGAAGCTGAACTCGATGAAGTTTTCCATAATGTGGAAGAAGTGCCTTCTATGACATAGACACAGAGCCAAACTGGTTATGGTACTCCAATGATGATGATGCCAACATTTGGAGCAGGATATTGTGATTCTAAGGTCGGCAGGAAATTATGATTCAAGGTCGGTCCATCATCTTCATACATGGATGTCGGTCCATCAACTTCTTACTTGCATGGACACAGACGTGGCCATGGAGAACATAACAAATATATGTATTATGAAGCAGTACTTGTAGAGGTATTAGATCGACAA
Coding sequence (CDS)
AGATCGAACAACACAAGACTTCGTGATGTTGCAGATGATCCACAAAAAATCCTTGATATATGTAATAATAATGAGAGGTACATGGAGCAGATACATAATATGTACGATCTACCTATTGTACCTCTACCAGTTCATAGGGGACGTGTTCGAGTGGAAGAAGCTGAACTCGATGAAGTTTTCCATAATGTGGAAGAAGTGCCTTCTATGACATAGACACAGAGCCAAACTGGTTATGGTACTCCAATGATGATGATGCCAACATTTGGAGCAGGATATTGTGATTCTAAGGTCGGCAGGAAATTATGATTCAAGGTCGGTCCATCATCTTCATACATGGATGTCGGTCCATCAACTTCTTACTTGCATGGACACAGACGTGGCCATGGAGAACATAACAAATATATGTATTATGAAGCAGTACTTGTAGAGGTATTAGATCGACAA
Protein sequence
RSNNTRLRDVADDPQKILDICNNNERYMEQIHNMYDLPIVPLPVHRGRVRVEEAELDEVFHNVEEVPSMT*TQSQTGYGTPMMMMPTFGAGYCDSKVGRKL*FKVGPSSSYMDVGPSTSYLHGHRRGHGEHNKYMYYEAVLVEVLDRQ
Homology
BLAST of Chy10G173610 vs. ExPASy TrEMBL
Match:
A0A5A7VEC1 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G001470 PE=4 SV=1)
HSP 1 Score: 231.5 bits (589), Expect = 2.3e-57
Identity = 110/141 (78.01%), Postives = 125/141 (88.65%), Query Frame = 0
Query: 1 RSNNTRLRDVADDPQKILDICNNNERYMEQIHNMYDLPIVPLPVHRGRVRVEEAELDEVF 60
RSNN RLRDVADDPQ++LDICNNNERYME+IHNMYDLPIVPLP+HRGR+RVEEAELDEV+
Sbjct: 66 RSNNARLRDVADDPQQVLDICNNNERYMEEIHNMYDLPIVPLPIHRGRIRVEEAELDEVY 125
Query: 61 HNVEEVPSMT*TQSQTGYGTPMMMMPTFGAGYCDSKVGRKL*FKVGP--SSSYMDVGPST 120
HNVEEVP T TQSQTGYG+ M MMPTFGA YCDS+VGR + G SSSYMDVGPST
Sbjct: 126 HNVEEVPPTTKTQSQTGYGSLMTMMPTFGARYCDSEVGRGY-YDAGVDLSSSYMDVGPST 185
Query: 121 SYLHGHRRGHGEHNKYMYYEA 140
SY+HG+ RG+GEHN+Y+Y+EA
Sbjct: 186 SYMHGYERGYGEHNEYLYHEA 205
BLAST of Chy10G173610 vs. ExPASy TrEMBL
Match:
A0A5D3BSG8 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2044G00130 PE=4 SV=1)
HSP 1 Score: 229.9 bits (585), Expect = 6.7e-57
Identity = 114/149 (76.51%), Postives = 127/149 (85.23%), Query Frame = 0
Query: 1 RSNNTRLRDVADDPQKILDICNNNERYMEQIHNMYDLPIVPLPVHRGRVRVEEAELDEVF 60
RSNN RLRDVADD Q+ LDICNNNERYME+IHNMYDLPIVP PVHRG VRVEEAELD+V+
Sbjct: 27 RSNNARLRDVADDLQQFLDICNNNERYMEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVY 86
Query: 61 HNVEEVPSMT*TQSQTGYGTPMMMMPTFGAGYCDSKVG-RKL*FKVGPSSSYMDVGPSTS 120
HNVEEVPS T TQSQTGYG+PM MMPTF AGYCD +VG VGPSSSY+DV PSTS
Sbjct: 87 HNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTS 146
Query: 121 YLHGHRRGHGEHNKYMYYEAVLVEVLDRQ 149
Y+HGHRRG+GEHN+Y+Y+EA +V DRQ
Sbjct: 147 YMHGHRRGYGEHNEYLYHEAP-ADVSDRQ 174
BLAST of Chy10G173610 vs. ExPASy TrEMBL
Match:
A0A5A7V342 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001560 PE=4 SV=1)
HSP 1 Score: 227.6 bits (579), Expect = 3.3e-56
Identity = 113/149 (75.84%), Postives = 126/149 (84.56%), Query Frame = 0
Query: 1 RSNNTRLRDVADDPQKILDICNNNERYMEQIHNMYDLPIVPLPVHRGRVRVEEAELDEVF 60
RSNN RLRDVADD Q+ LDICNNNERYME+IHNMYDLPIVP PVHRG VRVEEAELD+V+
Sbjct: 39 RSNNARLRDVADDLQQFLDICNNNERYMEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVY 98
Query: 61 HNVEEVPSMT*TQSQTGYGTPMMMMPTFGAGYCDSKVG-RKL*FKVGPSSSYMDVGPSTS 120
HNVEEVPS T TQSQTGYG+PM MMPTF AGYCD +VG VGPSSSY+DV PSTS
Sbjct: 99 HNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTS 158
Query: 121 YLHGHRRGHGEHNKYMYYEAVLVEVLDRQ 149
Y+HGH RG+GEHN+Y+Y+EA +V DRQ
Sbjct: 159 YMHGHSRGYGEHNEYLYHEAP-ADVSDRQ 186
BLAST of Chy10G173610 vs. ExPASy TrEMBL
Match:
A0A5D3DJV7 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00060 PE=4 SV=1)
HSP 1 Score: 226.9 bits (577), Expect = 5.7e-56
Identity = 111/149 (74.50%), Postives = 126/149 (84.56%), Query Frame = 0
Query: 1 RSNNTRLRDVADDPQKILDICNNNERYMEQIHNMYDLPIVPLPVHRGRVRVEEAELDEVF 60
RSNN RLRDV +DPQ++LDICNNNERYME+IHN+YDLPIVP PVHR R RVEEAELDEV+
Sbjct: 317 RSNNARLRDVVNDPQQVLDICNNNERYMEKIHNIYDLPIVPPPVHRERFRVEEAELDEVY 376
Query: 61 HNVEEVPSMT*TQSQTGYGTPMMMMPTFGAGYCDSKVG-RKL*FKVGPSSSYMDVGPSTS 120
HNVEEVP T TQSQTGYG+PM MMPTFGAGYCDS+V VGP SSYMDVGPSTS
Sbjct: 377 HNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYCDSEVSIGYYDAVVGPLSSYMDVGPSTS 436
Query: 121 YLHGHRRGHGEHNKYMYYEAVLVEVLDRQ 149
Y++GH RG+GEHN+Y+Y+EA +V DRQ
Sbjct: 437 YMYGHGRGYGEHNEYLYHEAP-TDVSDRQ 464
BLAST of Chy10G173610 vs. ExPASy TrEMBL
Match:
A0A5A7TBF8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G00270 PE=4 SV=1)
HSP 1 Score: 218.4 bits (555), Expect = 2.0e-53
Identity = 104/136 (76.47%), Postives = 117/136 (86.03%), Query Frame = 0
Query: 1 RSNNTRLRDVADDPQKILDICNNNERYMEQIHNMYDLPIVPLPVHRGRVRVEEAELDEVF 60
RSNN RLRDVADDPQ++L+ICNNN+RYME+IHNMYDL IVP PVHRGRVRVEEAELDEV+
Sbjct: 149 RSNNARLRDVADDPQQVLNICNNNKRYMEEIHNMYDLSIVPPPVHRGRVRVEEAELDEVY 208
Query: 61 HNVEEVPSMT*TQSQTGYGTPMMMMPTFGAGYCDSKVGR-KL*FKVGPSSSYMDVGPSTS 120
HNVEEVP T TQSQTGYG+PM MMPTFGAGY DS+VG + PSS YMDVGPS
Sbjct: 209 HNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYYDSEVGTGYYDAGISPSSLYMDVGPSNF 268
Query: 121 YLHGHRRGHGEHNKYM 136
Y+HGH+RG+GEHNKY+
Sbjct: 269 YMHGHKRGYGEHNKYL 284
BLAST of Chy10G173610 vs. NCBI nr
Match:
KAA0064245.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa] >TYK18615.1 GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])
HSP 1 Score: 229 bits (585), Expect = 7.37e-74
Identity = 110/141 (78.01%), Postives = 125/141 (88.65%), Query Frame = 0
Query: 1 RSNNTRLRDVADDPQKILDICNNNERYMEQIHNMYDLPIVPLPVHRGRVRVEEAELDEVF 60
RSNN RLRDVADDPQ++LDICNNNERYME+IHNMYDLPIVPLP+HRGR+RVEEAELDEV+
Sbjct: 66 RSNNARLRDVADDPQQVLDICNNNERYMEEIHNMYDLPIVPLPIHRGRIRVEEAELDEVY 125
Query: 61 HNVEEVPSMT*TQSQTGYGTPMMMMPTFGAGYCDSKVGRKL*FKVGP--SSSYMDVGPST 120
HNVEEVP T TQSQTGYG+ M MMPTFGA YCDS+VGR + G SSSYMDVGPST
Sbjct: 126 HNVEEVPPTTKTQSQTGYGSLMTMMPTFGARYCDSEVGRGY-YDAGVDLSSSYMDVGPST 185
Query: 121 SYLHGHRRGHGEHNKYMYYEA 139
SY+HG+ RG+GEHN+Y+Y+EA
Sbjct: 186 SYMHGYERGYGEHNEYLYHEA 205
BLAST of Chy10G173610 vs. NCBI nr
Match:
TYK01176.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])
HSP 1 Score: 228 bits (581), Expect = 2.80e-73
Identity = 114/149 (76.51%), Postives = 127/149 (85.23%), Query Frame = 0
Query: 1 RSNNTRLRDVADDPQKILDICNNNERYMEQIHNMYDLPIVPLPVHRGRVRVEEAELDEVF 60
RSNN RLRDVADD Q+ LDICNNNERYME+IHNMYDLPIVP PVHRG VRVEEAELD+V+
Sbjct: 27 RSNNARLRDVADDLQQFLDICNNNERYMEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVY 86
Query: 61 HNVEEVPSMT*TQSQTGYGTPMMMMPTFGAGYCDSKVG-RKL*FKVGPSSSYMDVGPSTS 120
HNVEEVPS T TQSQTGYG+PM MMPTF AGYCD +VG VGPSSSY+DV PSTS
Sbjct: 87 HNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTS 146
Query: 121 YLHGHRRGHGEHNKYMYYEAVLVEVLDRQ 148
Y+HGHRRG+GEHN+Y+Y+EA +V DRQ
Sbjct: 147 YMHGHRRGYGEHNEYLYHEAP-ADVSDRQ 174
BLAST of Chy10G173610 vs. NCBI nr
Match:
KAA0062642.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 226 bits (575), Expect = 3.38e-72
Identity = 113/149 (75.84%), Postives = 126/149 (84.56%), Query Frame = 0
Query: 1 RSNNTRLRDVADDPQKILDICNNNERYMEQIHNMYDLPIVPLPVHRGRVRVEEAELDEVF 60
RSNN RLRDVADD Q+ LDICNNNERYME+IHNMYDLPIVP PVHRG VRVEEAELD+V+
Sbjct: 39 RSNNARLRDVADDLQQFLDICNNNERYMEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVY 98
Query: 61 HNVEEVPSMT*TQSQTGYGTPMMMMPTFGAGYCDSKVG-RKL*FKVGPSSSYMDVGPSTS 120
HNVEEVPS T TQSQTGYG+PM MMPTF AGYCD +VG VGPSSSY+DV PSTS
Sbjct: 99 HNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTS 158
Query: 121 YLHGHRRGHGEHNKYMYYEAVLVEVLDRQ 148
Y+HGH RG+GEHN+Y+Y+EA +V DRQ
Sbjct: 159 YMHGHSRGYGEHNEYLYHEAP-ADVSDRQ 186
BLAST of Chy10G173610 vs. NCBI nr
Match:
KAA0025972.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 216 bits (550), Expect = 1.19e-68
Identity = 105/149 (70.47%), Postives = 124/149 (83.22%), Query Frame = 0
Query: 1 RSNNTRLRDVADDPQKILDICNNNERYMEQIHNMYDLPIVPLPVHRGRVRVEEAELDEVF 60
RSNN RLRDVADD Q++LDICNNN+R+ME+IHNMY LPIVP +HRGRV+VEEAELDEV+
Sbjct: 36 RSNNARLRDVADDSQQVLDICNNNKRHMEEIHNMYHLPIVPPQIHRGRVQVEEAELDEVY 95
Query: 61 HNVEEVPSMT*TQSQTGYGTPMMMMPTFGAGYCDSKVGRKL*FK-VGPSSSYMDVGPSTS 120
HNVEE+ T Q+QTGYG+PM+MMPTFG GYCD +V + VGPSSSYMDVGPSTS
Sbjct: 96 HNVEEMTPTTQKQNQTGYGSPMIMMPTFGVGYCDFEVNTEYYDSGVGPSSSYMDVGPSTS 155
Query: 121 YLHGHRRGHGEHNKYMYYEAVLVEVLDRQ 148
Y+HGHR +GEHN+Y+Y+EA EV DRQ
Sbjct: 156 YMHGHRHDYGEHNEYLYHEAP-TEVSDRQ 183
BLAST of Chy10G173610 vs. NCBI nr
Match:
TYK23842.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])
HSP 1 Score: 225 bits (573), Expect = 1.76e-68
Identity = 111/149 (74.50%), Postives = 126/149 (84.56%), Query Frame = 0
Query: 1 RSNNTRLRDVADDPQKILDICNNNERYMEQIHNMYDLPIVPLPVHRGRVRVEEAELDEVF 60
RSNN RLRDV +DPQ++LDICNNNERYME+IHN+YDLPIVP PVHR R RVEEAELDEV+
Sbjct: 317 RSNNARLRDVVNDPQQVLDICNNNERYMEKIHNIYDLPIVPPPVHRERFRVEEAELDEVY 376
Query: 61 HNVEEVPSMT*TQSQTGYGTPMMMMPTFGAGYCDSKVG-RKL*FKVGPSSSYMDVGPSTS 120
HNVEEVP T TQSQTGYG+PM MMPTFGAGYCDS+V VGP SSYMDVGPSTS
Sbjct: 377 HNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYCDSEVSIGYYDAVVGPLSSYMDVGPSTS 436
Query: 121 YLHGHRRGHGEHNKYMYYEAVLVEVLDRQ 148
Y++GH RG+GEHN+Y+Y+EA +V DRQ
Sbjct: 437 YMYGHGRGYGEHNEYLYHEAP-TDVSDRQ 464
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7VEC1 | 2.3e-57 | 78.01 | GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... | [more] |
| A0A5D3BSG8 | 6.7e-57 | 76.51 | GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... | [more] |
| A0A5A7V342 | 3.3e-56 | 75.84 | Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
| A0A5D3DJV7 | 5.7e-56 | 74.50 | Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... | [more] |
| A0A5A7TBF8 | 2.0e-53 | 76.47 | Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0064245.1 | 7.37e-74 | 78.01 | GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... | [more] |
| TYK01176.1 | 2.80e-73 | 76.51 | GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... | [more] |
| KAA0062642.1 | 3.38e-72 | 75.84 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... | [more] |
| KAA0025972.1 | 1.19e-68 | 70.47 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... | [more] |
| TYK23842.1 | 1.76e-68 | 74.50 | serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
