Chy8G156290 (gene) Cucumber (hystrix) v1

Overview


Name	Chy8G156290
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chrH08: 17423437 .. 17424444 (-)
RNA-Seq Expression	Chy8G156290
Synteny	Chy8G156290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCAAGATTTGAAGTGGAGAGATTCGATGGAAAGGCAGATTTTGTGCTATGGAAAATGAAGATGAAAGCACTTATAGTTCTACAACAAAGAGGTCTTCTTGAGACGACGACGACGGCAACAACAGCGAAGAATCGAGTTCAAGAAATGGAAAATATCGCCTACAGCACGATCATATTCCATTTGGAAGACAATGTGCTTCTCCAAGTCGGCGATGTTGAAACAACTGAGGAGTTGTGGGAAAGATTGGAACAACTATTCTCAAGAAAATCGTTTGGAGATAGGTTGTGTTTAAAGGAGAGATTCTTTAGATACAAAATGGATTCCTTGAAGAATCTTGAAGATAACTTGGAAGAATTTACGAAGGTTGTGTGGGATCTTTCAAGGATAGGAGCAGAGATATCGGATGAAGATCAAGCTGTGATTCTTCTCAGCTCACTTCCAAGTATGTATAATGAAGTGAAAGATAGTTTAATACATGGGGTTAGAGATTCATTAACTGTTGGGGTGGTTGTGGAAGCATTGAGAGCAAAGGATAAGGAAATGAATGAGAAAAAACAAGATGGTATTGAAGGAGGTAGGAAGTGTCACCATTGCCAGCAAGAAGGGCATATTCGACGAAATTGTCCTACGCTGCGTAAGAGCAAAGAATGGATAATAAGTTCGGGTTGCACGATGCACATGACACCGAACAAAAATTATTTGATTAGTTTCGTCGAAACGGAGGAAACAAAAGTGGCAGGATTCATTGATCAGGTTGAAGTTAAGGGTACAGGGTCAGTGAAGATCAAAGCTCATGATGGACAAATAAGAACTCTATCAAATGTTAAGTATATTCCAAATTTGACAAGAAATGTTATTTCTTTGGGAGTATTGGATGACAAGGGTTGCTTTTTCATGGGAGATAAAGGCACGTTGAAGATATATAAAGATTCTTCACTCAAATTGAAGGGAAAACTTAGTAATGGCCTCTATATATTAGAAGGATCAGCAATTACAAAGTGA

mRNA sequence

ATGGCAGCAAGATTTGAAGTGGAGAGATTCGATGGAAAGGCAGATTTTGTGCTATGGAAAATGAAGATGAAAGCACTTATAGTTCTACAACAAAGAGGTCTTCTTGAGACGACGACGACGGCAACAACAGCGAAGAATCGAGTTCAAGAAATGGAAAATATCGCCTACAGCACGATCATATTCCATTTGGAAGACAATGTGCTTCTCCAAGTCGGCGATGTTGAAACAACTGAGGAGTTGTGGGAAAGATTGGAACAACTATTCTCAAGAAAATCGTTTGGAGATAGGTTGTGTTTAAAGGAGAGATTCTTTAGATACAAAATGGATTCCTTGAAGAATCTTGAAGATAACTTGGAAGAATTTACGAAGGTTGTGTGGGATCTTTCAAGGATAGGAGCAGAGATATCGGATGAAGATCAAGCTGTGATTCTTCTCAGCTCACTTCCAAGTATGTATAATGAAGTGAAAGATAGTTTAATACATGGGGTTAGAGATTCATTAACTGTTGGGGTGGTTGTGGAAGCATTGAGAGCAAAGGATAAGGAAATGAATGAGAAAAAACAAGATGGTATTGAAGGAGGTAGGAAGTGTCACCATTGCCAGCAAGAAGGGCATATTCGACGAAATTGTCCTACGCTGCGTAAGAGCAAAGAATGGATAATAAGTTCGGGTTGCACGATGCACATGACACCGAACAAAAATTATTTGATTAGTTTCGTCGAAACGGAGGAAACAAAAGTGGCAGGATTCATTGATCAGGTTGAAGTTAAGGGTACAGGGTCAGTGAAGATCAAAGCTCATGATGGACAAATAAGAACTCTATCAAATGTTAAGTATATTCCAAATTTGACAAGAAATGTTATTTCTTTGGGAGTATTGGATGACAAGGGTTGCTTTTTCATGGGAGATAAAGGCACGTTGAAGATATATAAAGATTCTTCACTCAAATTGAAGGGAAAACTTAGTAATGGCCTCTATATATTAGAAGGATCAGCAATTACAAAGTGA

Coding sequence (CDS)

ATGGCAGCAAGATTTGAAGTGGAGAGATTCGATGGAAAGGCAGATTTTGTGCTATGGAAAATGAAGATGAAAGCACTTATAGTTCTACAACAAAGAGGTCTTCTTGAGACGACGACGACGGCAACAACAGCGAAGAATCGAGTTCAAGAAATGGAAAATATCGCCTACAGCACGATCATATTCCATTTGGAAGACAATGTGCTTCTCCAAGTCGGCGATGTTGAAACAACTGAGGAGTTGTGGGAAAGATTGGAACAACTATTCTCAAGAAAATCGTTTGGAGATAGGTTGTGTTTAAAGGAGAGATTCTTTAGATACAAAATGGATTCCTTGAAGAATCTTGAAGATAACTTGGAAGAATTTACGAAGGTTGTGTGGGATCTTTCAAGGATAGGAGCAGAGATATCGGATGAAGATCAAGCTGTGATTCTTCTCAGCTCACTTCCAAGTATGTATAATGAAGTGAAAGATAGTTTAATACATGGGGTTAGAGATTCATTAACTGTTGGGGTGGTTGTGGAAGCATTGAGAGCAAAGGATAAGGAAATGAATGAGAAAAAACAAGATGGTATTGAAGGAGGTAGGAAGTGTCACCATTGCCAGCAAGAAGGGCATATTCGACGAAATTGTCCTACGCTGCGTAAGAGCAAAGAATGGATAATAAGTTCGGGTTGCACGATGCACATGACACCGAACAAAAATTATTTGATTAGTTTCGTCGAAACGGAGGAAACAAAAGTGGCAGGATTCATTGATCAGGTTGAAGTTAAGGGTACAGGGTCAGTGAAGATCAAAGCTCATGATGGACAAATAAGAACTCTATCAAATGTTAAGTATATTCCAAATTTGACAAGAAATGTTATTTCTTTGGGAGTATTGGATGACAAGGGTTGCTTTTTCATGGGAGATAAAGGCACGTTGAAGATATATAAAGATTCTTCACTCAAATTGAAGGGAAAACTTAGTAATGGCCTCTATATATTAGAAGGATCAGCAATTACAAAGTGA

Protein sequence

MAARFEVERFDGKADFVLWKMKMKALIVLQQRGLLETTTTATTAKNRVQEMENIAYSTIIFHLEDNVLLQVGDVETTEELWERLEQLFSRKSFGDRLCLKERFFRYKMDSLKNLEDNLEEFTKVVWDLSRIGAEISDEDQAVILLSSLPSMYNEVKDSLIHGVRDSLTVGVVVEALRAKDKEMNEKKQDGIEGGRKCHHCQQEGHIRRNCPTLRKSKEWIISSGCTMHMTPNKNYLISFVETEETKVAGFIDQVEVKGTGSVKIKAHDGQIRTLSNVKYIPNLTRNVISLGVLDDKGCFFMGDKGTLKIYKDSSLKLKGKLSNGLYILEGSAITK*

Homology

[Close]

BLAST of Chy8G156290 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.1e-27
Identity = 99/402 (24.63%), Postives = 177/402 (44.03%), Query Frame = 0


Query: 4   RFEVERFDGKADFVLWKMKMKALIVLQQRGL-----LETTTTATTAKNRVQEMENIAYST 63
           ++EV +F+G   F  W+ +M+ L++  Q+GL     +++    T       +++  A S 
Sbjct: 5   KYEVAKFNGDNGFSTWQRRMRDLLI--QQGLHKVLDVDSKKPDTMKAEDWADLDERAASA 64

Query: 64  IIFHLEDNVLLQVGDVETTEELWERLEQLFSRKSFGDRLCLKERFFRYKMDSLKNLEDNL 123
           I  HL D+V+  + D +T   +W RLE L+  K+  ++L LK++ +   M    N   +L
Sbjct: 65  IRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHL 124

Query: 124 EEFTKVVWDLSRIGAEISDEDQAVILLSSLPSMYNEVKDSLIHG-----VRDSLTVGVVV 183
             F  ++  L+ +G +I +ED+A++LL+SLPS Y+ +  +++HG     ++D  +  ++ 
Sbjct: 125 NVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKTTIELKDVTSALLLN 184

Query: 184 EALRAK-----------------DKEMNEKKQDGIEGG---------RKCHHCQQEGHIR 243
           E +R K                  +  N   + G  G          R C++C Q GH +
Sbjct: 185 EKMRKKPENQGQALITEGRGRSYQRSSNNYGRSGARGKSKNRSKSRVRNCYNCNQPGHFK 244

Query: 244 RNCPTLRKSK----------------------------------------EWIISSGCTM 303
           R+CP  RK K                                        EW++ +  + 
Sbjct: 245 RDCPNPRKGKGETSGQKNDDNTAAMVQNNDNVVLFINEEEECMHLSGPESEWVVDTAASH 304

Query: 304 HMTPNKNYLISFVETE-ETKVAGFIDQVEVKGTGSVKIKAHDGQIRTLSNVKYIPNLTRN 327
           H TP ++    +V  +  T   G     ++ G G + IK + G    L +V+++P+L  N
Sbjct: 305 HATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHVPDLRMN 364

[Close]

BLAST of Chy8G156290 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 71.6 bits (174), Expect = 1.9e-11
Identity = 61/243 (25.10%), Postives = 111/243 (45.68%), Query Frame = 0


Query: 3   ARFEVERFDGKADFVLWKMKMKALIVLQQRGLLETTTTATTAKNRVQEMENIAYSTIIFH 62
           A+  ++ FDG+  + +WK +++AL+  Q    +          +  ++ E  A STII +
Sbjct: 4   AKRNIKPFDGE-KYAIWKFRIRALLAEQDVLKVVDGLMPNEVDDSWKKAERCAKSTIIEY 63

Query: 63  LEDNVLLQVGDVETTEELWERLEQLFSRKSFGDRLCLKERFFRYKMDSLKNLEDNLEEFT 122
           L D+ L       T  ++ E L+ ++ RKS   +L L++R    K+ S  +L  +   F 
Sbjct: 64  LSDSFLNFATSDITARQILENLDAVYERKSLASQLALRKRLLSLKLSSEMSLLSHFHIFD 123

Query: 123 KVVWDLSRIGAEISDEDQAVILLSSLPSMYNEVKDSLIHGVRDSLTVGVVVEALRAKD-- 182
           +++ +L   GA+I + D+   LL +LPS Y+ +  ++     ++LT+  V   L  ++  
Sbjct: 124 ELISELLAAGAKIEEMDKISHLLITLPSCYDGIITAIETLSEENLTLAFVKNRLLDQEIK 183

Query: 183 ----------KEMN-------------------EKKQDGIEGGR----KCHHCQQEGHIR 211
                     K MN                    K +   +G      KCHHC +EGHI+
Sbjct: 184 IKNDHNDTSKKVMNAIVHNNNNTYKNNLFKNRVTKPKKIFKGNSKYKVKCHHCGREGHIK 243

[Close]

BLAST of Chy8G156290 vs. ExPASy Swiss-Prot
Match: P25601 (Putative transposon Ty5-1 protein YCL075W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5B PE=5 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 3.8e-04
Identity = 27/77 (35.06%), Postives = 43/77 (55.84%), Query Frame = 0


Query: 215 KSKEWIISSGCTMHMTPNKNYLISFVETEETK-VAGFIDQVEVKGTGSVKIKAHDGQIRT 274
           KS EWI  +GCT HM  +++   SF  +     V G    + + G+G+V I    G ++ 
Sbjct: 75  KSSEWIFDTGCTSHMCHDRSIFSSFTRSSRKDFVRGVGGSIPIMGSGTVNI----GTVQ- 134

Query: 275 LSNVKYIPNLTRNVISL 291
           L +V Y+P+L  N+IS+
Sbjct: 135 LHDVSYVPDLPVNLISV 146

[Close]

BLAST of Chy8G156290 vs. ExPASy TrEMBL
Match: A0A5A7U6T6 (Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G003990 PE=4 SV=1)

HSP 1 Score: 590.1 bits (1520), Expect = 5.8e-165
Identity = 296/334 (88.62%), Postives = 313/334 (93.71%), Query Frame = 0


Query: 1   MAARFEVERFDGKADFVLWKMKMKALIVLQQRGLLETTTTATTAKNRVQEMENIAYSTII 60
           MAARFEVERFDGKADFVLWKM+MKALI+LQQRGL ETTTT TTAK+RVQEMENIA+STII
Sbjct: 1   MAARFEVERFDGKADFVLWKMRMKALILLQQRGLPETTTTTTTAKDRVQEMENIAFSTII 60

Query: 61  FHLEDNVLLQVGDVETTEELWERLEQLFSRKSFGDRLCLKERFFRYKMDSLKNLEDNLEE 120
           FHLEDNVLLQV DVET+EELWERLEQLFSRKSF DRL LKERFF YKMDS KN+EDNLEE
Sbjct: 61  FHLEDNVLLQVSDVETSEELWERLEQLFSRKSFRDRLYLKERFFGYKMDSSKNIEDNLEE 120

Query: 121 FTKVVWDLSRIGAEISDEDQAVILLSSLPSMYNEVKDSLIHGVRDSLTVGVVVEALRAKD 180
           FTK+ WD SRIGAE+SDEDQAVILLSSLPSMYNEVKDSLIHGVRDSLTVG+VV ALRAKD
Sbjct: 121 FTKIAWDFSRIGAEVSDEDQAVILLSSLPSMYNEVKDSLIHGVRDSLTVGMVVNALRAKD 180

Query: 181 KEMNEKKQDGIEGGRKCHHCQQEGHIRRNCPTLRKSKEWIISSGCTMHMTPNKNYLISFV 240
           KEMNEK+Q+GIE GRKC+HCQ+EGHIRRNCPTLRKSKEWI+SSGCTMHMTPNKNYLI FV
Sbjct: 181 KEMNEKRQEGIERGRKCYHCQKEGHIRRNCPTLRKSKEWILSSGCTMHMTPNKNYLIDFV 240

Query: 241 ETEETKVAGFIDQVEVKGTGSVKIKAHDGQIRTLSNVKYIPNLTRNVISLGVLDDKGCFF 300
           ETEETKV GF DQ EVKG G VKIK  DGQIRTLSNVKY+PNLTRNVISLGVLDDKGCFF
Sbjct: 241 ETEETKVNGFNDQFEVKGVGLVKIKTDDGQIRTLSNVKYVPNLTRNVISLGVLDDKGCFF 300

Query: 301 MGDKGTLKIYKDSSLKLKGKLSNGLYILEGSAIT 335
           MGD+GTLKIYKDSSL LK KL+NGLYILEGSAIT
Sbjct: 301 MGDEGTLKIYKDSSLILKSKLTNGLYILEGSAIT 334

[Close]

BLAST of Chy8G156290 vs. ExPASy TrEMBL
Match: A0A5D3DNU1 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004440 PE=4 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 1.1e-70
Identity = 157/405 (38.77%), Postives = 238/405 (58.77%), Query Frame = 0


Query: 2   AARFEVERFDGKADFVLWKMKMKALIVLQQ--RGLLETTTTATTAKNRVQEMENIAYSTI 61
           + RFEV +F+G  DF LW+ K++A++V  +  + L E        ++  ++M+ +AYSTI
Sbjct: 3   STRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYSTI 62

Query: 62  IFHLEDNVLLQVGDVETTEELWERLEQLFSRKSFGDRLCLKERFFRYKMDSLKNLEDNLE 121
           + +L D VL  V +  TT ELW++LE L+  KS  +++ +KE+FF YKMD  K+LE+NL+
Sbjct: 63  LLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYIKEKFFGYKMDQSKSLEENLD 122

Query: 122 EFTKVVWDLSRIGAEISDEDQAVILLSSLPSMYNEVKDSLIHGVRDSLTVGVVVEALRAK 181
           EF K+V DL+ IG ++SDE+QAVILL+SLP  Y EVK ++ +G RDSLT+ +V++AL+ +
Sbjct: 123 EFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYG-RDSLTMSIVLDALKTR 182

Query: 182 DKEMNEKKQDG------------------------IEG-GRKCHHCQQEGHIRRNCPTLR 241
           + E+ ++++DG                         +G  RKC  C +EGH ++NCP L 
Sbjct: 183 NLEIKKERKDGELLMARGRSEKKSWKGKERSFRSKSKGKSRKCFLCHKEGHFKKNCP-LN 242

Query: 242 KSKE--------------------------------------------WIISSGCTMHMT 301
           KS+E                                            WI+ SGCT HMT
Sbjct: 243 KSREASTSEANVTDGYNSAEITDGYDSAETGYESAEVLMVSHRDIQDAWIMDSGCTFHMT 302

Query: 302 PNKNYLISFVETEETKV-AGFIDQVEVKGTGSVKIKAHDGQIRTLSNVKYIPNLTRNVIS 335
           P++++L +F + +  KV  G     +VKGTGSV+I  HDG +R L+NV+Y+P L RN+IS
Sbjct: 303 PHRDFLTNFQKVDGGKVLLGDNGTCDVKGTGSVQIATHDGMVRILTNVRYVPKLKRNLIS 362

[Close]

BLAST of Chy8G156290 vs. ExPASy TrEMBL
Match: A0A5A7UB25 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold560G00190 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 3.1e-70
Identity = 157/405 (38.77%), Postives = 238/405 (58.77%), Query Frame = 0


Query: 2   AARFEVERFDGKADFVLWKMKMKALIVLQQ--RGLLETTTTATTAKNRVQEMENIAYSTI 61
           + RFEV +F+G  DF LW+ K++A++V  +  + L E        ++  ++M+ +AYSTI
Sbjct: 3   STRFEVSKFNGHGDFSLWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYSTI 62

Query: 62  IFHLEDNVLLQVGDVETTEELWERLEQLFSRKSFGDRLCLKERFFRYKMDSLKNLEDNLE 121
           + +L D VL  V +  TT ELW++LE L+  KS  +++ +KE+FF YKMD  K+LE+NL+
Sbjct: 63  LLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLLNKIYIKEKFFGYKMDQSKSLEENLD 122

Query: 122 EFTKVVWDLSRIGAEISDEDQAVILLSSLPSMYNEVKDSLIHGVRDSLTVGVVVEALRAK 181
           EF K+V DL+ IG ++SDE+QAVILL+SLP  Y EVK ++ +G RDSLT+ +V++AL+ +
Sbjct: 123 EFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYG-RDSLTMSIVLDALKTR 182

Query: 182 DKEMNEKKQDG------------------------IEG-GRKCHHCQQEGHIRRNCPTLR 241
           + E+ ++++DG                         +G  RKC  C +EGH ++NCP L 
Sbjct: 183 NLEIKKERKDGELLMARGRSEKKSWKGKERSFRSKSKGKSRKCFLCHKEGHFKKNCP-LN 242

Query: 242 KSKE--------------------------------------------WIISSGCTMHMT 301
           KS+E                                            WI+ SGCT HMT
Sbjct: 243 KSREASTSEANVTDGYNSAEITDGYDSAETGYESAEVLMVSHRDIQDAWIMDSGCTFHMT 302

Query: 302 PNKNYLISFVETEETKV-AGFIDQVEVKGTGSVKIKAHDGQIRTLSNVKYIPNLTRNVIS 335
           P++++L +F + +  KV  G     +VKGTGSV+I  HDG +R L+NV+Y+P L RN+IS
Sbjct: 303 PHRDFLTNFQKVDGGKVLLGDNGTCDVKGTGSVQIATHDGMVRILTNVRYVPKLKRNLIS 362

[Close]

BLAST of Chy8G156290 vs. ExPASy TrEMBL
Match: A0A5A7U2U7 (Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00590 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 1.7e-68
Identity = 155/405 (38.27%), Postives = 235/405 (58.02%), Query Frame = 0


Query: 2   AARFEVERFDGKADFVLWKMKMKALIVLQQ--RGLLETTTTATTAKNRVQEMENIAYSTI 61
           + RFEV +F+G  DF LW+ K++A++V  +  + L E        ++  ++M+ +AY TI
Sbjct: 3   STRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYWTI 62

Query: 62  IFHLEDNVLLQVGDVETTEELWERLEQLFSRKSFGDRLCLKERFFRYKMDSLKNLEDNLE 121
           + +L D VL  V +  TT ELW++LE L+  KS  +++ +KE+FF YKMD  K LE+NL+
Sbjct: 63  LLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYIKEKFFGYKMDQSKILEENLD 122

Query: 122 EFTKVVWDLSRIGAEISDEDQAVILLSSLPSMYNEVKDSLIHGVRDSLTVGVVVEALRAK 181
           EF K+V DL+ IG ++SDE+QAVILL+SLP  Y EVK ++ +G  DSLT+ +V++AL+ +
Sbjct: 123 EFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYG-WDSLTMSIVLDALKTR 182

Query: 182 DKEMNEKKQDG------------------------IEG-GRKCHHCQQEGHIRRNCPTLR 241
           + E+ ++++DG                         +G  RKC  C +EGH ++NCP L 
Sbjct: 183 NLEIKKERKDGELLMARGRSEKKSWKGKERSFRSKSKGKSRKCFLCHKEGHFKKNCP-LN 242

Query: 242 KSKE--------------------------------------------WIISSGCTMHMT 301
           KS+E                                            WI+ SGCT HMT
Sbjct: 243 KSREASTSEANVTDGYNSAEITDGCDSAETGYESAEVLMVSHRDIQDAWIMDSGCTFHMT 302

Query: 302 PNKNYLISFVETEETKV-AGFIDQVEVKGTGSVKIKAHDGQIRTLSNVKYIPNLTRNVIS 335
           P++++L +F + +  KV  G     +VKGTGSV+I  HDG +R L+NV+Y+P L RN+IS
Sbjct: 303 PHRDFLTNFQKVDGGKVLLGDNGTCDVKGTGSVQIATHDGMVRILTNVRYVPKLKRNLIS 362

[Close]

BLAST of Chy8G156290 vs. ExPASy TrEMBL
Match: A0A5D3BRB2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2454G00070 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 1.8e-65
Identity = 157/406 (38.67%), Postives = 232/406 (57.14%), Query Frame = 0


Query: 2   AARFEVERFDGKADFVLWKMKMKALIVLQQ--RGLLETTTTATTAKNRVQEMENIAYSTI 61
           + RFEV +F+   DF LW+ K++A++V  +  + L E    A   +N  ++M+ +AYSTI
Sbjct: 3   STRFEVSKFNVNGDFALWRKKIRAILVQHKVAKILDEGRLPANITENEKRDMDEMAYSTI 62

Query: 62  IFHLEDNVLLQVGD-VETTEELWERLEQLFSRKSFGDRLCLKERFFRYKMDSLKNLEDNL 121
           + +L   VL  V +   TT ELW++LE L+  KS  +++ +KE+FF YKMD  K+LE+NL
Sbjct: 63  LMYLSVEVLRLVDETTTTTAELWKKLESLYLTKSLPNKIYIKEKFFGYKMDQSKSLEENL 122

Query: 122 EEFTKVVWDLSRIGAEISDEDQAVILLSSLPSMYNEVKDSLIHGVRDSLTVGVVVEALRA 181
            EF K+V DL+ IG ++SDE+QA+ILL+SLP  Y EVK ++ +G RDSLT+ +V +AL+ 
Sbjct: 123 NEFQKIVVDLNNIGEKMSDENQAIILLNSLPETYREVKAAIKYG-RDSLTMSIVFDALKT 182

Query: 182 KDKEMNEKKQDG----IEG---------------------GRKCHHCQQEGHIRRNCPTL 241
           ++ ++ ++++DG      G                      RKC  C +EGH ++NCP L
Sbjct: 183 RNLKIKKERKDGELLMARGRSDKKKWKGKEKSSRMNSNGEARKCFLCHKEGHFKKNCP-L 242

Query: 242 RKSKE--------------------------------------------WIISSGCTMHM 301
            KS+E                                            WI+ SGCT HM
Sbjct: 243 NKSREASTSEANVTDGYNSANITYGYDSAETGYESAEVLMVSHRDIQDAWIMDSGCTYHM 302

Query: 302 TPNKNYLISFVETEETKV-AGFIDQVEVKGTGSVKIKAHDGQIRTLSNVKYIPNLTRNVI 335
           TPN+++LI+F +++  KV  G     EVKGTGSV I  HDG IR L+NV+Y+P L RN+I
Sbjct: 303 TPNQDFLINFQKSDGGKVLLGDNGTCEVKGTGSVLIATHDGMIRMLTNVRYVPELKRNLI 362

[Close]

BLAST of Chy8G156290 vs. NCBI nr
Match: KAA0050900.1 (putative retroelement pol polyprotein [Cucumis melo var. makuwa] >TYK10251.1 putative retroelement pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 593 bits (1529), Expect = 1.87e-212
Identity = 296/334 (88.62%), Postives = 313/334 (93.71%), Query Frame = 0


Query: 1   MAARFEVERFDGKADFVLWKMKMKALIVLQQRGLLETTTTATTAKNRVQEMENIAYSTII 60
           MAARFEVERFDGKADFVLWKM+MKALI+LQQRGL ETTTT TTAK+RVQEMENIA+STII
Sbjct: 1   MAARFEVERFDGKADFVLWKMRMKALILLQQRGLPETTTTTTTAKDRVQEMENIAFSTII 60

Query: 61  FHLEDNVLLQVGDVETTEELWERLEQLFSRKSFGDRLCLKERFFRYKMDSLKNLEDNLEE 120
           FHLEDNVLLQV DVET+EELWERLEQLFSRKSF DRL LKERFF YKMDS KN+EDNLEE
Sbjct: 61  FHLEDNVLLQVSDVETSEELWERLEQLFSRKSFRDRLYLKERFFGYKMDSSKNIEDNLEE 120

Query: 121 FTKVVWDLSRIGAEISDEDQAVILLSSLPSMYNEVKDSLIHGVRDSLTVGVVVEALRAKD 180
           FTK+ WD SRIGAE+SDEDQAVILLSSLPSMYNEVKDSLIHGVRDSLTVG+VV ALRAKD
Sbjct: 121 FTKIAWDFSRIGAEVSDEDQAVILLSSLPSMYNEVKDSLIHGVRDSLTVGMVVNALRAKD 180

Query: 181 KEMNEKKQDGIEGGRKCHHCQQEGHIRRNCPTLRKSKEWIISSGCTMHMTPNKNYLISFV 240
           KEMNEK+Q+GIE GRKC+HCQ+EGHIRRNCPTLRKSKEWI+SSGCTMHMTPNKNYLI FV
Sbjct: 181 KEMNEKRQEGIERGRKCYHCQKEGHIRRNCPTLRKSKEWILSSGCTMHMTPNKNYLIDFV 240

Query: 241 ETEETKVAGFIDQVEVKGTGSVKIKAHDGQIRTLSNVKYIPNLTRNVISLGVLDDKGCFF 300
           ETEETKV GF DQ EVKG G VKIK  DGQIRTLSNVKY+PNLTRNVISLGVLDDKGCFF
Sbjct: 241 ETEETKVNGFNDQFEVKGVGLVKIKTDDGQIRTLSNVKYVPNLTRNVISLGVLDDKGCFF 300

Query: 301 MGDKGTLKIYKDSSLKLKGKLSNGLYILEGSAIT 334
           MGD+GTLKIYKDSSL LK KL+NGLYILEGSAIT
Sbjct: 301 MGDEGTLKIYKDSSLILKSKLTNGLYILEGSAIT 334

[Close]

BLAST of Chy8G156290 vs. NCBI nr
Match: TYK25306.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 280 bits (716), Expect = 3.41e-81
Identity = 157/405 (38.77%), Postives = 238/405 (58.77%), Query Frame = 0


Query: 2   AARFEVERFDGKADFVLWKMKMKALIVLQQ--RGLLETTTTATTAKNRVQEMENIAYSTI 61
           + RFEV +F+G  DF LW+ K++A++V  +  + L E        ++  ++M+ +AYSTI
Sbjct: 3   STRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYSTI 62

Query: 62  IFHLEDNVLLQVGDVETTEELWERLEQLFSRKSFGDRLCLKERFFRYKMDSLKNLEDNLE 121
           + +L D VL  V +  TT ELW++LE L+  KS  +++ +KE+FF YKMD  K+LE+NL+
Sbjct: 63  LLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYIKEKFFGYKMDQSKSLEENLD 122

Query: 122 EFTKVVWDLSRIGAEISDEDQAVILLSSLPSMYNEVKDSLIHGVRDSLTVGVVVEALRAK 181
           EF K+V DL+ IG ++SDE+QAVILL+SLP  Y EVK ++ +G RDSLT+ +V++AL+ +
Sbjct: 123 EFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYG-RDSLTMSIVLDALKTR 182

Query: 182 DKEMNEKKQDG------------------------IEG-GRKCHHCQQEGHIRRNCPTLR 241
           + E+ ++++DG                         +G  RKC  C +EGH ++NCP L 
Sbjct: 183 NLEIKKERKDGELLMARGRSEKKSWKGKERSFRSKSKGKSRKCFLCHKEGHFKKNCP-LN 242

Query: 242 KSKE--------------------------------------------WIISSGCTMHMT 301
           KS+E                                            WI+ SGCT HMT
Sbjct: 243 KSREASTSEANVTDGYNSAEITDGYDSAETGYESAEVLMVSHRDIQDAWIMDSGCTFHMT 302

Query: 302 PNKNYLISFVETEETKVA-GFIDQVEVKGTGSVKIKAHDGQIRTLSNVKYIPNLTRNVIS 334
           P++++L +F + +  KV  G     +VKGTGSV+I  HDG +R L+NV+Y+P L RN+IS
Sbjct: 303 PHRDFLTNFQKVDGGKVLLGDNGTCDVKGTGSVQIATHDGMVRILTNVRYVPKLKRNLIS 362

[Close]

BLAST of Chy8G156290 vs. NCBI nr
Match: KAA0050719.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 278 bits (712), Expect = 9.44e-81
Identity = 157/405 (38.77%), Postives = 238/405 (58.77%), Query Frame = 0


Query: 2   AARFEVERFDGKADFVLWKMKMKALIVLQQ--RGLLETTTTATTAKNRVQEMENIAYSTI 61
           + RFEV +F+G  DF LW+ K++A++V  +  + L E        ++  ++M+ +AYSTI
Sbjct: 3   STRFEVSKFNGHGDFSLWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYSTI 62

Query: 62  IFHLEDNVLLQVGDVETTEELWERLEQLFSRKSFGDRLCLKERFFRYKMDSLKNLEDNLE 121
           + +L D VL  V +  TT ELW++LE L+  KS  +++ +KE+FF YKMD  K+LE+NL+
Sbjct: 63  LLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLLNKIYIKEKFFGYKMDQSKSLEENLD 122

Query: 122 EFTKVVWDLSRIGAEISDEDQAVILLSSLPSMYNEVKDSLIHGVRDSLTVGVVVEALRAK 181
           EF K+V DL+ IG ++SDE+QAVILL+SLP  Y EVK ++ +G RDSLT+ +V++AL+ +
Sbjct: 123 EFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYG-RDSLTMSIVLDALKTR 182

Query: 182 DKEMNEKKQDG------------------------IEG-GRKCHHCQQEGHIRRNCPTLR 241
           + E+ ++++DG                         +G  RKC  C +EGH ++NCP L 
Sbjct: 183 NLEIKKERKDGELLMARGRSEKKSWKGKERSFRSKSKGKSRKCFLCHKEGHFKKNCP-LN 242

Query: 242 KSKE--------------------------------------------WIISSGCTMHMT 301
           KS+E                                            WI+ SGCT HMT
Sbjct: 243 KSREASTSEANVTDGYNSAEITDGYDSAETGYESAEVLMVSHRDIQDAWIMDSGCTFHMT 302

Query: 302 PNKNYLISFVETEETKVA-GFIDQVEVKGTGSVKIKAHDGQIRTLSNVKYIPNLTRNVIS 334
           P++++L +F + +  KV  G     +VKGTGSV+I  HDG +R L+NV+Y+P L RN+IS
Sbjct: 303 PHRDFLTNFQKVDGGKVLLGDNGTCDVKGTGSVQIATHDGMVRILTNVRYVPKLKRNLIS 362

[Close]

BLAST of Chy8G156290 vs. NCBI nr
Match: KAA0038009.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK02203.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 263 bits (671), Expect = 5.98e-79
Identity = 158/407 (38.82%), Postives = 236/407 (57.99%), Query Frame = 0


Query: 2   AARFEVERFDGKADFVLWKMKMKALIVLQQ--RGLLETTTTATTAKNRVQEMENIAYSTI 61
           + RFEV +F+   DF LW+ K++A++V  +  + L E    A   +N  ++M+ +AYSTI
Sbjct: 3   STRFEVSKFNVNGDFALWRKKIRAILVQHKVAKILDEGRLPANITENEKRDMDEMAYSTI 62

Query: 62  IFHLEDNVLLQVGDVETTE-ELWERLEQLFSRKSFGDRLCLKERFFRYKMDSLKNLEDNL 121
           + +L   VL  V +  TT  ELW++LE L+  KS  +++ +KE+FF YKMD  K+LE+NL
Sbjct: 63  LMYLSVEVLRLVDETTTTTAELWKKLESLYLTKSLPNKIYIKEKFFGYKMDQSKSLEENL 122

Query: 122 EEFTKVVWDLSRIGAEISDEDQAVILLSSLPSMYNEVKDSLIHGVRDSLTVGVVVEALRA 181
            EF K+V DL+ IG ++SDE+QA+ILL+SLP  Y EVK ++ +G RDSLT+ +V +AL+ 
Sbjct: 123 NEFQKIVVDLNNIGEKMSDENQAIILLNSLPETYREVKAAIKYG-RDSLTMSIVFDALKT 182

Query: 182 KDKEMNEKKQDG----IEG---------------------GRKCHHCQQEGHIRRNCPTL 241
           ++ ++ ++++DG      G                      RKC  C +EGH ++NCP L
Sbjct: 183 RNLKIKKERKDGELLMARGRSDKKKWKGKEKSSRMNSNGEARKCFLCHKEGHFKKNCP-L 242

Query: 242 RKSKE--------------------------------------------WIISSGCTMHM 301
            KS+E                                            WI+ SGCT HM
Sbjct: 243 NKSREASTSEANVTDGYNSANITYGYDSAETGYESAEVLMVSHRDIQDAWIMDSGCTYHM 302

Query: 302 TPNKNYLISFVETEETKVA-GFIDQVEVKGTGSVKIKAHDGQIRTLSNVKYIPNLTRNVI 334
           TPN+++LI+F +++  KV  G     EVKGTGSV I  HDG IR L+NV+Y+P L RN+I
Sbjct: 303 TPNQDFLINFQKSDGGKVLLGDNGTCEVKGTGSVLIATHDGMIRMLTNVRYVPELKRNLI 362

[Close]

BLAST of Chy8G156290 vs. NCBI nr
Match: KAA0047995.1 (retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa])

HSP 1 Score: 273 bits (697), Expect = 1.19e-78
Identity = 155/405 (38.27%), Postives = 235/405 (58.02%), Query Frame = 0


Query: 2   AARFEVERFDGKADFVLWKMKMKALIVLQQ--RGLLETTTTATTAKNRVQEMENIAYSTI 61
           + RFEV +F+G  DF LW+ K++A++V  +  + L E        ++  ++M+ +AY TI
Sbjct: 3   STRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYWTI 62

Query: 62  IFHLEDNVLLQVGDVETTEELWERLEQLFSRKSFGDRLCLKERFFRYKMDSLKNLEDNLE 121
           + +L D VL  V +  TT ELW++LE L+  KS  +++ +KE+FF YKMD  K LE+NL+
Sbjct: 63  LLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYIKEKFFGYKMDQSKILEENLD 122

Query: 122 EFTKVVWDLSRIGAEISDEDQAVILLSSLPSMYNEVKDSLIHGVRDSLTVGVVVEALRAK 181
           EF K+V DL+ IG ++SDE+QAVILL+SLP  Y EVK ++ +G  DSLT+ +V++AL+ +
Sbjct: 123 EFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGW-DSLTMSIVLDALKTR 182

Query: 182 DKEMNEKKQDG------------------------IEG-GRKCHHCQQEGHIRRNCPTLR 241
           + E+ ++++DG                         +G  RKC  C +EGH ++NCP L 
Sbjct: 183 NLEIKKERKDGELLMARGRSEKKSWKGKERSFRSKSKGKSRKCFLCHKEGHFKKNCP-LN 242

Query: 242 KSKE--------------------------------------------WIISSGCTMHMT 301
           KS+E                                            WI+ SGCT HMT
Sbjct: 243 KSREASTSEANVTDGYNSAEITDGCDSAETGYESAEVLMVSHRDIQDAWIMDSGCTFHMT 302

Query: 302 PNKNYLISFVETEETKVA-GFIDQVEVKGTGSVKIKAHDGQIRTLSNVKYIPNLTRNVIS 334
           P++++L +F + +  KV  G     +VKGTGSV+I  HDG +R L+NV+Y+P L RN+IS
Sbjct: 303 PHRDFLTNFQKVDGGKVLLGDNGTCDVKGTGSVQIATHDGMVRILTNVRYVPKLKRNLIS 362

[Close]

BLAST of Chy8G156290 vs. TAIR 10
Match: AT3G21000.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 51.2 bits (121), Expect = 1.9e-06
Identity = 29/80 (36.25%), Postives = 45/80 (56.25%), Query Frame = 0


Query: 219 WIISSGCTMHMTPNKNYLISFVETEETKVAGFID--QVEVKGTGSVKIKAHDGQIRTLSN 278
           WII     ++MTP   Y  +   T +  V G +D   + V+G G VKI+  +G+ +T+ N
Sbjct: 280 WIIHKMAPINMTPYVKYFTTLDRTFKATV-GTVDGTVLLVEGKGDVKIRMKEGKKKTIRN 339

Query: 279 VKYIPNLTRNVISLGVLDDK 297
           V ++P L RNV+S G +  K
Sbjct: 340 VIFVPGLNRNVLSFGKMVSK 358

The following BLAST results are available for this feature:

BLAST of Chy8G156290 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.1e-27	24.63	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.9e-11	25.10	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P25601	3.8e-04	35.06	Putative transposon Ty5-1 protein YCL075W OS=Saccharomyces cerevisiae (strain AT...	[more]

BLAST of Chy8G156290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U6T6	5.8e-165	88.62	Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5D3DNU1	1.1e-70	38.77	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5A7UB25	3.1e-70	38.77	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A5A7U2U7	1.7e-68	38.27	Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. maku...	[more]
A0A5D3BRB2	1.8e-65	38.67	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of Chy8G156290 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050900.1	1.87e-212	88.62	putative retroelement pol polyprotein [Cucumis melo var. makuwa] >TYK10251.1 put...	[more]
TYK25306.1	3.41e-81	38.77	putative gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0050719.1	9.44e-81	38.77	putative gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0038009.1	5.98e-79	38.82	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0047995.1	1.19e-78	38.27	retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa...	[more]

BLAST of Chy8G156290 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G21000.1	1.9e-06	36.25	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 196..212 e-value: 0.0068 score: 24.6
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 195..211 e-value: 8.2E-5 score: 22.5
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 195..211 score: 9.537339
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 50..185 e-value: 1.3E-28 score: 99.5
None	No IPR available	GENE3D	4.10.60.10		coord: 191..248 e-value: 4.3E-6 score: 28.9
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 5..192
None	No IPR available	PANTHER	PTHR34676:SF12	ZINC FINGER, CCHC-TYPE, RIBONUCLEASE H-LIKE DOMAIN, GAG-PRE-INTEGRASE DOMAIN PROTEIN-RELATED	coord: 5..192
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 185..218

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy8G156290.1	Chy8G156290.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding