Chy1G001690.1 (mRNA) Cucumber (hystrix) v1

Overview
NameChy1G001690.1
TypemRNA
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionCYSTM domain-containing protein
LocationchrH01: 1159681 .. 1162913 (-)
Sequence length552
RNA-Seq ExpressionChy1G001690.1
SyntenyChy1G001690.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGATCCCAAATATGCCTATCCCTACCCACCTCCTCAAGGTATGTTGAGCTATGTTCAGGTTGGTAATTTCACTGTTACTTTTTGTTTGATTTAGTAATTTGGGGTGGTGTGGATTTATTTGCAGGAGGATATTATCAAGGGCCACCAGTGATGGCGCCACCGCAGTACGCCGCCCCACCGCCAAGACGACAACCGGGTTTCTTGGAGGGATGGTATGCCAAAAAGCTTCTTCTTTTTGTTGATAATTAAACTCCCTCTTTAATTGTTCTGGTTTTGCTTGCATATATCCAAACTGAAGGTTTGAATTGAGTGTTAGGATGATCTAAAGAAAATTTATATCTGTACTACCGTGATAAAAGATAGAACTTGAACATGCTGCCTTTGATTTGGTTTCTTGAAATCTTTCTCTCTCGGGTGCTAAACATATTGAAGTGACGAGATCGTCTATGAAGTTTGAACTACATCTTAGGTTTGGATTCTATGTTTTCTTTAGTGTGGCTTAACAGAGGGTTTAATTTTGTGTTTGCAGCCTTGCAGCTCTATGCTGCTGCTGCCTCCTTGATGAATGCTGCTGTGACCCTTCCATTATCTTTCTTACTTGATGCTATGAGAGAATTCATTGCCTTGGTAGCTGTAAATTGCTTCATCTCTTATCTCTTTTCTTTCCTTATTTTGTTTGTGTGATTTGATTTTGTGTAAACTTGAAAAGAACATTGATTGGTGTGCAGAATAAAAGCTGCTTTGTTGTAAAGTATATTATATAGAGTTTATATATACTCATTTATGATAGTAAATTGATAGGTCATTCTCGTTACCTAGCAAATTTAGTCTTTATATTTTAGCACACATACGTGTTTATCCCTTCTCTAGCTCATGAGAAGTAGGGAACTATAGATCGATGCTAGACAACGCTTCTTGTTGATGATCTATACTCCAACAAAATTTAGGATTTCTCGTCACTCTTCAAAGATCAATGTTGTTGAATGTTGAGAATCTTATCATAAAAAGATTAAGAAAACCACAAAACTTTAATAAAATAAATGAATTCAATTATTTTGAGATGAAATTTCATGTTTATAAAAAAATGACACATTTAAATAAGATGTGTGTGGTGATTCTCTATAAAGATTCATAGGGTCGCACAAACCTAATGGTCTTTAAAATGAATTTCTAATCGAGGAAAAGATTGGTATGTATTTGTTATTTTTCTAGCTGTCTAGTTTCTTCAAGCAACATTTGTCCAATAGATATAAGTTTAGAGATTTAATTATATGTAAAAAGAAACTCAAGATCATCCACCTAAACTTATAATTTTTTCTAACAAGAATGAGATCAGAAGAAAAAGGTTTAGATTTATGAAAGGATGCAATTTATGTATATAGTTTGGCAATGTTTTTGCTGATCTGTTCCAAATTCTTTTAGAAATACACATTCTTTCTCTAATGGGGTGGAAAGATGAGACTTGTGGAAGGTCTCTATTCTCCCAACCAACCAAAATTTAAATGTATAGAACAACAATCAACACAACTATTACGTACTGGATAGTATTGAGTAGCAGCAAGATCAGTTAGATTTGCAAGGAAGGGTGATATAATTTTCTAATTGAAGTCTGGTAAATGCAATCTTATTGAATTATTTAGTCACCCTTTTCTTTTCTTTATGTAATCTTAAATATAATAATTGAGAGCAGGTGAAGAAAACAGACACATCTACAAAAGTGGATTAGCTTAATCACCCCATAAACAACAATTGAATGAGACATAATAATCCCAAAGACTAACTAATGCACAGGTAGATACAAAGAATAACACGAGAGAGTCTAGACTCTACGACTTTCTTGATATGATCTCCGTTTCTCGAGCTCTAAACATATCGAAACAACAAGATAGTTGTCTTCGATATATCTGTTTATTTTAGTCTTTGAGTAACAGTTGGGTTTAATATTTTTGTGTGGTTGCAGCATTGCAGCTCTCTGTGCTGTTGGTGTCTTCTTTGATCTAAGCTTTGATTGACACTTTGTAGCTTTAAATTGACTTTTTCATTGTGTAGGGGATGGTTTGGTTTTGTGTATAAACTTGGAAAAGATGTATTGAATAACGCTGTGCTTTGTCGTAGAGACAGTAACTTTATGGGTCATTTACATAAAAAATAATTTAGTTTATAAACTTTAACACGTATGTGTGTGCATTTAGGCTTTAAACGTTGAACTCTCTTTTTCGGCTTGTGAAAACCCTCTCTACAGGATGCAATGCACCAAAAAGTGACACTTTATTTTTATGTTAATGTATTTAGTATTTTCAATAAACATTTGTTCAAAATAGAAATGTTTCTAATCATTCGTATGAATGCAACGTGAAATATACACCATCACAATTTAAAGCTTAGAGATGTAATTATAAATTATCTCTCCTTAACAAAATCGAGATCACATGTATAGATGCACTTAACAAAGAAGTTGGTCATAATTATATGTCATAAATCCTCGTAATTTATTCTCGAGCATCATAAATATGATGGACATTAAACCAGTCTATATATATATATTTTTTCATTCAATCCAAACATGTCCTTTATTATAAGTTAAAACAACTATATTTTTCAACTAAAATAATAAAGAATAAAAATACTCAATGTTCTATAATAACTAACTCCCTCGAATCTAACTTAAGTTTTGTTTGAGATTGTTGTACCTTTTAAAATAATTGTCTAAAAAAATTGAATATTATAATACGATCGAAAGAAGAAATAAAATAAGTGAAATACATGAAAACATCAATAGAGATTAGAGGGAGAAAAAAGAATGTAAATTATCAAAACATTATAATAAAACGGTTTAAGATTTTTGTAAACTATAATAAAATTGTCAAATGGGAAACCAAAATTCAAATGGGATTTTAAAAATCTAAAAACGAAAAAGTTTGTAAAATGTAATTTTTAAAAAAATATCATAATCCTAAAAAGAAAATGAATATTTCCCATTGCGAGTTTACCAAATTACCCCTTCAATTCGAAACGCGTCCCCACTTTAGTCCACGTCACCAACGTGTAGGACCCACTCAACATGAAACTCAAATTCATCCCAAATTCAAAAAACACGACTCCCTTATTTTTTCCACAATCCAACGATTTCATAATTCGCCACGTGCTCAAAAACCCTCAACATCGACCGTTCATTCCAGCTCATTCGGTCAGAGCATAGGGCAGCAAGCCACGGAGTATTCACCGTAA

mRNA sequence

ATGAGTGATCCCAAATATGCCTATCCCTACCCACCTCCTCAAGTAATTTGGGGTGGTGTGGATTTATTTGCAGGAGGATATTATCAAGGGCCACCAGTGATGGCGCCACCGCAGTACGCCGCCCCACCGCCAAGACGACAACCGGTGTGGCTTAACAGAGGGTTTAATTTTGTGTTTGCAGCCTTGCAGCTCTATGCTGCTGCTGCCTCCTTGATGAATGCTGCTGTGACCCTTCCATTATCTTTCTTACTTGATGCTATGAGAGAATTCATTGCCTTGGTAGCTAAAATGAATATTTCCCATTGCGAGTTTACCAAATTACCCCTTCAATTCGAAACGCGTCCCCACTTTAGTCCACGTCACCAACGTGTAGGACCCACTCAACATGAAACTCAAATTCATCCCAAATTCAAAAAACACGACTCCCTTATTTTTTCCACAATCCAACGATTTCATAATTCGCCACGTGCTCAAAAACCCTCAACATCGACCGTTCATTCCAGCTCATTCGGTCAGAGCATAGGGCAGCAAGCCACGGAGTATTCACCGTAA

Coding sequence (CDS)

ATGAGTGATCCCAAATATGCCTATCCCTACCCACCTCCTCAAGTAATTTGGGGTGGTGTGGATTTATTTGCAGGAGGATATTATCAAGGGCCACCAGTGATGGCGCCACCGCAGTACGCCGCCCCACCGCCAAGACGACAACCGGTGTGGCTTAACAGAGGGTTTAATTTTGTGTTTGCAGCCTTGCAGCTCTATGCTGCTGCTGCCTCCTTGATGAATGCTGCTGTGACCCTTCCATTATCTTTCTTACTTGATGCTATGAGAGAATTCATTGCCTTGGTAGCTAAAATGAATATTTCCCATTGCGAGTTTACCAAATTACCCCTTCAATTCGAAACGCGTCCCCACTTTAGTCCACGTCACCAACGTGTAGGACCCACTCAACATGAAACTCAAATTCATCCCAAATTCAAAAAACACGACTCCCTTATTTTTTCCACAATCCAACGATTTCATAATTCGCCACGTGCTCAAAAACCCTCAACATCGACCGTTCATTCCAGCTCATTCGGTCAGAGCATAGGGCAGCAAGCCACGGAGTATTCACCGTAA

Protein sequence

MSDPKYAYPYPPPQVIWGGVDLFAGGYYQGPPVMAPPQYAAPPPRRQPVWLNRGFNFVFAALQLYAAAASLMNAAVTLPLSFLLDAMREFIALVAKMNISHCEFTKLPLQFETRPHFSPRHQRVGPTQHETQIHPKFKKHDSLIFSTIQRFHNSPRAQKPSTSTVHSSSFGQSIGQQATEYSP*
Homology
[Close]
BLAST of Chy1G001690.1 vs. ExPASy TrEMBL
Match: A0A5A7SN04 (Cysteine-rich and transmembrane domain-containing protein A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001610 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 2.1e-31
Identity = 81/109 (74.31%), Postives = 83/109 (76.15%), Query Frame = 0 

Query: 1  MSDPKYAYPYPPPQVIWGGVDLFAGGYYQGPPVMAPPQYAAPPPRRQP------------ 60
          MSDPKYAYPYPPPQ          GGYYQGPPVMAPPQYAAPPP+RQP            
Sbjct: 1  MSDPKYAYPYPPPQ----------GGYYQGPPVMAPPQYAAPPPKRQPGFLEGWFGFPVR 60

Query: 61 -VWLNRGFNFVFAALQLYAAAASLMNAAVTLPLSFLLDAMRE-FIALVA 96
           VWLNRGFNFVFAALQLYAAA SLMNAAVTLPLSFLLDAMR+ FIA VA
Sbjct: 61 LVWLNRGFNFVFAALQLYAAAVSLMNAAVTLPLSFLLDAMRDFFIAFVA 99

[Close]
BLAST of Chy1G001690.1 vs. ExPASy TrEMBL
Match: A0A0A0K7L8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G069130 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 7.6e-26
Identity = 71/99 (71.72%), Postives = 73/99 (73.74%), Query Frame = 0 

Query: 1   MSDPKYAYPYPPPQVIWGGVDLFAGGYYQGPPVMAPPQYAAPPPRRQPVWLNRGFNFVFA 60
           MSDPKYAYPYPPPQ          GGYYQGPPVMAPPQYAAPPPRRQP            
Sbjct: 1   MSDPKYAYPYPPPQ----------GGYYQGPPVMAPPQYAAPPPRRQP------------ 60

Query: 61  ALQLYAAAASLMNAAVTLPLSFLLDAMREFIALVAKMNI 100
           ALQLYAAA SLMNAAVTLPLSFLLDAMREFIA VA  ++
Sbjct: 61  ALQLYAAAVSLMNAAVTLPLSFLLDAMREFIAFVAHTHV 77

[Close]
BLAST of Chy1G001690.1 vs. ExPASy TrEMBL
Match: A0A1D5ZCR8 (CYSTM domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 7.6e-10
Identity = 36/51 (70.59%), Postives = 37/51 (72.55%), Query Frame = 0 

Query: 1  MSDPKYAYPYPPPQVIWGGVDLFAGGYYQGPPVMAPPQYAAPPPRRQPVWL 52
          MSDPKYAYPYP      GG     GG YQGPPVMAPPQYAAPPPR QP +L
Sbjct: 1  MSDPKYAYPYPAQGYYQGGPYQGQGGPYQGPPVMAPPQYAAPPPRAQPSFL 51

[Close]
BLAST of Chy1G001690.1 vs. ExPASy TrEMBL
Match: A0A453M4G5 (CYSTM domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 7.6e-10
Identity = 36/51 (70.59%), Postives = 37/51 (72.55%), Query Frame = 0 

Query: 1   MSDPKYAYPYPPPQVIWGGVDLFAGGYYQGPPVMAPPQYAAPPPRRQPVWL 52
           MSDPKYAYPYP      GG     GG YQGPPVMAPPQYAAPPPR QP +L
Sbjct: 122 MSDPKYAYPYPAQGYYQGGPYQGQGGPYQGPPVMAPPQYAAPPPRAQPSFL 172

[Close]
BLAST of Chy1G001690.1 vs. ExPASy TrEMBL
Match: A0A453M4H1 (Uncharacterized protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 7.6e-10
Identity = 36/51 (70.59%), Postives = 37/51 (72.55%), Query Frame = 0 

Query: 1   MSDPKYAYPYPPPQVIWGGVDLFAGGYYQGPPVMAPPQYAAPPPRRQPVWL 52
           MSDPKYAYPYP      GG     GG YQGPPVMAPPQYAAPPPR QP +L
Sbjct: 65  MSDPKYAYPYPAQGYYQGGPYQGQGGPYQGPPVMAPPQYAAPPPRAQPSFL 115

[Close]
BLAST of Chy1G001690.1 vs. NCBI nr
Match: KAA0031406.1 (cysteine-rich and transmembrane domain-containing protein A-like [Cucumis melo var. makuwa] >TYK06857.1 cysteine-rich and transmembrane domain-containing protein A-like [Cucumis melo var. makuwa])

HSP 1 Score: 144 bits (362), Expect = 9.31e-41
Identity = 81/109 (74.31%), Postives = 83/109 (76.15%), Query Frame = 0 

Query: 1  MSDPKYAYPYPPPQVIWGGVDLFAGGYYQGPPVMAPPQYAAPPPRRQP------------ 60
          MSDPKYAYPYPPPQ          GGYYQGPPVMAPPQYAAPPP+RQP            
Sbjct: 1  MSDPKYAYPYPPPQ----------GGYYQGPPVMAPPQYAAPPPKRQPGFLEGWFGFPVR 60

Query: 61 -VWLNRGFNFVFAALQLYAAAASLMNAAVTLPLSFLLDAMREF-IALVA 95
           VWLNRGFNFVFAALQLYAAA SLMNAAVTLPLSFLLDAMR+F IA VA
Sbjct: 61 LVWLNRGFNFVFAALQLYAAAVSLMNAAVTLPLSFLLDAMRDFFIAFVA 99

[Close]
BLAST of Chy1G001690.1 vs. NCBI nr
Match: KGN43811.1 (hypothetical protein Csa_017361 [Cucumis sativus])

HSP 1 Score: 125 bits (315), Expect = 5.34e-34
Identity = 71/99 (71.72%), Postives = 73/99 (73.74%), Query Frame = 0 

Query: 1  MSDPKYAYPYPPPQVIWGGVDLFAGGYYQGPPVMAPPQYAAPPPRRQPVWLNRGFNFVFA 60
          MSDPKYAYPYPPPQ          GGYYQGPPVMAPPQYAAPPPRRQP            
Sbjct: 1  MSDPKYAYPYPPPQ----------GGYYQGPPVMAPPQYAAPPPRRQP------------ 60

Query: 61 ALQLYAAAASLMNAAVTLPLSFLLDAMREFIALVAKMNI 99
          ALQLYAAA SLMNAAVTLPLSFLLDAMREFIA VA  ++
Sbjct: 61 ALQLYAAAVSLMNAAVTLPLSFLLDAMREFIAFVAHTHV 77

[Close]
BLAST of Chy1G001690.1 vs. NCBI nr
Match: KAG9440061.1 (hypothetical protein H6P81_020226 [Aristolochia fimbriata])

HSP 1 Score: 81.3 bits (199), Expect = 1.41e-16
Identity = 51/86 (59.30%), Postives = 51/86 (59.30%), Query Frame = 0 

Query: 1  MSDPKYAYPYPPPQVIWGGVDLFAGGYYQGPPVMAPPQYAAPPPRRQPVWLNRGFNFVFA 60
          MSDPKYAYPYP            A GYYQGPPVMAPPQYAAPPPRRQP  L         
Sbjct: 1  MSDPKYAYPYP------------AQGYYQGPPVMAPPQYAAPPPRRQPASL--------- 60

Query: 61 ALQLYAAAASLMNAAVTLPLSFLLDA 86
             L A A SLMNAAVT P S   DA
Sbjct: 61 ---LSAVAVSLMNAAVTPPSSLSADA 62

[Close]
BLAST of Chy1G001690.1 vs. NCBI nr
Match: KAG8497388.1 (hypothetical protein CXB51_008632 [Gossypium anomalum])

HSP 1 Score: 79.3 bits (194), Expect = 5.05e-16
Identity = 48/85 (56.47%), Postives = 49/85 (57.65%), Query Frame = 0 

Query: 1  MSDPKYAYPYPPPQVIWGGVDLFAGGYYQGPPVMAPPQYAAPPPRRQPVWLNRGFNFVFA 60
          MSDPKYAYPYP            A GYYQGPPVMAPPQYAAPPPRR+PV           
Sbjct: 1  MSDPKYAYPYP------------AQGYYQGPPVMAPPQYAAPPPRREPV----------- 60

Query: 61 ALQLYAAAASLMNAAVTLPLSFLLD 85
           LQLY A   LMN AV  P S   D
Sbjct: 61 -LQLYVAVVLLMNVAVIHPSSLSAD 61

[Close]
BLAST of Chy1G001690.1 vs. NCBI nr
Match: KAG6571885.1 (hypothetical protein SDJN03_28613, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011569.1 hypothetical protein SDJN02_26475 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 76.3 bits (186), Expect = 8.76e-15
Identity = 37/52 (71.15%), Postives = 39/52 (75.00%), Query Frame = 0 

Query: 1  MSDPKYAYPYPPPQVIWGGVDLFAGGYYQGPPVMAPPQYAAPPPRRQPVWLN 52
          MSDPKYAYPYPPP           GGYYQGPPVMAPPQYAAPPP+RQP +L 
Sbjct: 1  MSDPKYAYPYPPPP----------GGYYQGPPVMAPPQYAAPPPKRQPGFLE 42

[Close]
BLAST of Chy1G001690.1 vs. TAIR 10
Match: AT4G33660.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 47.0 bits (110), Expect = 1.9e-05
Identity = 27/50 (54.00%), Postives = 27/50 (54.00%), Query Frame = 0 

Query: 1  MSDPKYAYPYPPPQVIWGGVDLFAGGYYQG--PPVMAPPQYAAPPPRRQP 49
          MSDPKYAYPYP P           G Y QG  PPV  PPQY  PPP   P
Sbjct: 1  MSDPKYAYPYPAP-----------GNYPQGPPPPVGVPPQYYPPPPPPPP 39

The following BLAST results are available for this feature:
BLAST of Chy1G001690.1 vs.
Match NameE-valueIdentityDescription
BLAST of Chy1G001690.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SN042.1e-3174.31Cysteine-rich and transmembrane domain-containing protein A-like OS=Cucumis melo... [more]
A0A0A0K7L87.6e-2671.72Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G069130 PE=4 SV=1[more]
A0A1D5ZCR87.6e-1070.59CYSTM domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1[more]
A0A453M4G57.6e-1070.59CYSTM domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=20036... [more]
A0A453M4H17.6e-1070.59Uncharacterized protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 S... [more]
BLAST of Chy1G001690.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0031406.19.31e-4174.31cysteine-rich and transmembrane domain-containing protein A-like [Cucumis melo v... [more]
KGN43811.15.34e-3471.72hypothetical protein Csa_017361 [Cucumis sativus][more]
KAG9440061.11.41e-1659.30hypothetical protein H6P81_020226 [Aristolochia fimbriata][more]
KAG8497388.15.05e-1656.47hypothetical protein CXB51_008632 [Gossypium anomalum][more]
KAG6571885.18.76e-1571.15hypothetical protein SDJN03_28613, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Chy1G001690.1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G33660.11.9e-0554.00unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 153..183

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Chy1G001690Chy1G001690gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Chy1G001690.1.exon4Chy1G001690.1.exon4exon
Chy1G001690.1.exon3Chy1G001690.1.exon3exon
Chy1G001690.1.exon2Chy1G001690.1.exon2exon
Chy1G001690.1.exon1Chy1G001690.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Chy1G001690.1.cds4Chy1G001690.1.cds4CDS
Chy1G001690.1.cds3Chy1G001690.1.cds3CDS
Chy1G001690.1.cds2Chy1G001690.1.cds2CDS
Chy1G001690.1.cds1Chy1G001690.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Chy1G001690.1Chy1G001690.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005886 plasma membrane