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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGCTTGATTTCAGACAAGGACCTGTATGCAACAACTTGAAGATTAGTGACTTTGATCCATGCCTCTTAACTATAAAAAATGCTAATACTCTTACATTATGTAGACGGAATTATGAGGTAAATTTTTGCTTTATTTGTATGATATTTCTTTCATCATATAGTATAAAAATTAAAAATGAAGACTGTTATTTGTGCTGTTGCAGGCACTAATATGGCCTTCTTTAGCTTCTTTACAAGGGAACTTCATATTTTATAATCTTAAAGAGCTCTGGTGGATTGATTATTCTTCAAATGAAGGATACAATAGTAATGCATTGGTCACCTTCCTCCAGATGTGTCCTGCCTTAGAGCGACTTTTCGTCACGGTACATCTCGTCTCTTTCGCTTCTCTTCACTTTCTTGATGATACAATCTGCAGCTATGACAATTGACAAAACCAATTCTAAAAGCTTCATGAACTTATTTACATTGATGTCAAACTCTATACAGATTGATCCTAAAAGCTATGGCACACCGAGCACGAAGACGTACTCAAAGAACGTCTGGAGGAAAGCGAAATTGGAACATCTAAAACTTGTACGTTTGAAGGGGTTTATGGATCAGAATGAAGAAATGTCATTGATTAGGCTGATAAAAGAGCTAGTTTCTGAGAATCCATTGTTCATATCAGTAATTGATCAGAACAACTTGGAGAGTTTGGTTGAAATTCCTTCCAATCAGTTCAAATCACAGAGTTTTCTCAACATCAAAGCAGAGAAACATGAATCAAATGGAAGAAAAACTTTCTCTAAGTTGGATGATGCAGAACAAACATGGCCTAAACATCCTCACATGAATCTTTAG mRNA sequence ATGCTTGATTTCAGACAAGGACCTGTATGCAACAACTTGAAGATTAGTGACTTTGATCCATGCCTCTTAACTATAAAAAATGCTAATACTCTTACATTATGTAGACGGAATTATGAGGCACTAATATGGCCTTCTTTAGCTTCTTTACAAGGGAACTTCATATTTTATAATCTTAAAGAGCTCTGGTGGATTGATTATTCTTCAAATGAAGGATACAATAGTAATGCATTGGTCACCTTCCTCCAGATGTGTCCTGCCTTAGAGCGACTTTTCGTCACGATTGATCCTAAAAGCTATGGCACACCGAGCACGAAGACGTACTCAAAGAACGTCTGGAGGAAAGCGAAATTGGAACATCTAAAACTTGTACGTTTGAAGGGGTTTATGGATCAGAATGAAGAAATGTCATTGATTAGGCTGATAAAAGAGCTAGTTTCTGAGAATCCATTGTTCATATCAGTAATTGATCAGAACAACTTGGAGAGTTTGGTTGAAATTCCTTCCAATCAGTTCAAATCACAGAGTTTTCTCAACATCAAAGCAGAGAAACATGAATCAAATGGAAGAAAAACTTTCTCTAAGTTGGATGATGCAGAACAAACATGGCCTAAACATCCTCACATGAATCTTTAG Coding sequence (CDS) ATGCTTGATTTCAGACAAGGACCTGTATGCAACAACTTGAAGATTAGTGACTTTGATCCATGCCTCTTAACTATAAAAAATGCTAATACTCTTACATTATGTAGACGGAATTATGAGGCACTAATATGGCCTTCTTTAGCTTCTTTACAAGGGAACTTCATATTTTATAATCTTAAAGAGCTCTGGTGGATTGATTATTCTTCAAATGAAGGATACAATAGTAATGCATTGGTCACCTTCCTCCAGATGTGTCCTGCCTTAGAGCGACTTTTCGTCACGATTGATCCTAAAAGCTATGGCACACCGAGCACGAAGACGTACTCAAAGAACGTCTGGAGGAAAGCGAAATTGGAACATCTAAAACTTGTACGTTTGAAGGGGTTTATGGATCAGAATGAAGAAATGTCATTGATTAGGCTGATAAAAGAGCTAGTTTCTGAGAATCCATTGTTCATATCAGTAATTGATCAGAACAACTTGGAGAGTTTGGTTGAAATTCCTTCCAATCAGTTCAAATCACAGAGTTTTCTCAACATCAAAGCAGAGAAACATGAATCAAATGGAAGAAAAACTTTCTCTAAGTTGGATGATGCAGAACAAACATGGCCTAAACATCCTCACATGAATCTTTAG Protein sequence MLDFRQGPVCNNLKISDFDPCLLTIKNANTLTLCRRNYEALIWPSLASLQGNFIFYNLKELWWIDYSSNEGYNSNALVTFLQMCPALERLFVTIDPKSYGTPSTKTYSKNVWRKAKLEHLKLVRLKGFMDQNEEMSLIRLIKELVSENPLFISVIDQNNLESLVEIPSNQFKSQSFLNIKAEKHESNGRKTFSKLDDAEQTWPKHPHMNL
Homology
BLAST of Bhi06G000616 vs. TAIR 10
Match: AT2G39490.1 (F-box family protein ) HSP 1 Score: 106.7 bits (265), Expect = 2.3e-23 Identity = 63/154 (40.91%), Postives = 97/154 (62.99%), Query Frame = 0 Query: 1 MLDFRQGPVCNNLKISDFDPCLLTIKNANTLTLCRRNYEALIWPSLASLQGNFIFYNLKE 60 + D QGP N + D P LTIKN+ +LTLCR +E +I PS++S +F FY L+E Sbjct: 233 VFDVTQGPSYYNNAL-DIGPLSLTIKNSQSLTLCRWMFEEVIKPSISSSWRSFQFYKLQE 292
Query: 61 LWWIDYSSNEGYNSNALVTFLQMCPALERLFVTIDPKSYGTPSTKTYSKNV-WRKAKLEH 120 L WID S N+ N+L++FL++CP++ERLF+TID +Y S + S N + L Sbjct: 293 LRWIDNSMNQ-EQINSLISFLKLCPSIERLFITIDSNTYS--SNEEVSVNADHARVVLRD 352
Query: 121 LKLVRLKGFMDQNEEMSLIRLIKELVS-ENPLFI 153 L++V+L+GF + ++ LI ++E+VS + PL + Sbjct: 353 LEVVKLEGFKSEEDKNQLIFALQEIVSIDQPLLV 382
BLAST of Bhi06G000616 vs. ExPASy Swiss-Prot
Match: Q5S4V7 (F-box protein At2g39490 OS=Arabidopsis thaliana OX=3702 GN=At2g39490 PE=2 SV=1) HSP 1 Score: 106.7 bits (265), Expect = 3.3e-22 Identity = 63/154 (40.91%), Postives = 97/154 (62.99%), Query Frame = 0 Query: 1 MLDFRQGPVCNNLKISDFDPCLLTIKNANTLTLCRRNYEALIWPSLASLQGNFIFYNLKE 60 + D QGP N + D P LTIKN+ +LTLCR +E +I PS++S +F FY L+E Sbjct: 233 VFDVTQGPSYYNNAL-DIGPLSLTIKNSQSLTLCRWMFEEVIKPSISSSWRSFQFYKLQE 292
Query: 61 LWWIDYSSNEGYNSNALVTFLQMCPALERLFVTIDPKSYGTPSTKTYSKNV-WRKAKLEH 120 L WID S N+ N+L++FL++CP++ERLF+TID +Y S + S N + L Sbjct: 293 LRWIDNSMNQ-EQINSLISFLKLCPSIERLFITIDSNTYS--SNEEVSVNADHARVVLRD 352
Query: 121 LKLVRLKGFMDQNEEMSLIRLIKELVS-ENPLFI 153 L++V+L+GF + ++ LI ++E+VS + PL + Sbjct: 353 LEVVKLEGFKSEEDKNQLIFALQEIVSIDQPLLV 382
BLAST of Bhi06G000616 vs. ExPASy TrEMBL
Match: A0A5D3C3A4 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002850 PE=4 SV=1) HSP 1 Score: 347.1 bits (889), Expect = 5.3e-92 Identity = 167/211 (79.15%), Postives = 187/211 (88.63%), Query Frame = 0 Query: 1 MLDFRQGPVCNNLKISDFDPCLLTIKNANTLTLCRRNYEALIWPSLASLQGNFIFYNLKE 60 MLDFRQGP CNN KISDFDPCLLTIKNANTLTLCR NYE LIWPSL SLQGNFIFYN+KE Sbjct: 223 MLDFRQGPGCNNFKISDFDPCLLTIKNANTLTLCRWNYEVLIWPSLTSLQGNFIFYNIKE 282
Query: 61 LWWIDYSSNEGYNSNALVTFLQMCPALERLFVTIDPKSYGTPSTKTYSKNVWRKAKLEHL 120 LWWID +SN GYN+NALV+FLQMCP LERLF+TIDPKSY TPS +TY+KNV RK KLEHL Sbjct: 283 LWWIDSNSNGGYNNNALVSFLQMCPTLERLFITIDPKSYDTPSKETYTKNVRRKTKLEHL 342
Query: 121 KLVRLKGFMDQNEEMSLIRLIKELVS-ENPLFISVIDQNNLESLVEIPSNQFKSQSFLNI 180 KLVRLKGF+DQNEEM+LIRLIKE+V+ + PLF +VID+N LESL E+P NQ KSQSF++ Sbjct: 343 KLVRLKGFVDQNEEMALIRLIKEVVAVDPPLFSTVIDKNKLESLAEVPYNQIKSQSFIDF 402
Query: 181 KAEKHESNGRKTFSKLDDAEQTWPKHPHMNL 211 K EK+ S+G+ FSKLDDAEQTWPKHPHMNL Sbjct: 403 KTEKNGSDGKNLFSKLDDAEQTWPKHPHMNL 433
BLAST of Bhi06G000616 vs. ExPASy TrEMBL
Match: A0A1S3CJE5 (F-box protein At2g39490 OS=Cucumis melo OX=3656 GN=LOC103501647 PE=4 SV=1) HSP 1 Score: 346.3 bits (887), Expect = 9.1e-92 Identity = 166/211 (78.67%), Postives = 187/211 (88.63%), Query Frame = 0 Query: 1 MLDFRQGPVCNNLKISDFDPCLLTIKNANTLTLCRRNYEALIWPSLASLQGNFIFYNLKE 60 MLDFRQGP CNN KISDFDPCLLTIKNANTLTLCR NYE LIWPSL SLQGNFIFYN+KE Sbjct: 223 MLDFRQGPGCNNFKISDFDPCLLTIKNANTLTLCRWNYEVLIWPSLTSLQGNFIFYNIKE 282
Query: 61 LWWIDYSSNEGYNSNALVTFLQMCPALERLFVTIDPKSYGTPSTKTYSKNVWRKAKLEHL 120 LWWID +SN GYN+NALV+FLQMCP LERLF+TIDPKSY TPS +TY+KNV RK KLEHL Sbjct: 283 LWWIDSNSNGGYNNNALVSFLQMCPTLERLFITIDPKSYDTPSKETYTKNVRRKTKLEHL 342
Query: 121 KLVRLKGFMDQNEEMSLIRLIKELVS-ENPLFISVIDQNNLESLVEIPSNQFKSQSFLNI 180 KLV LKGF+DQNEEM+LIRLIKE+V+ + PLF++VID+N LESL E+P NQ KSQSF++ Sbjct: 343 KLVSLKGFVDQNEEMALIRLIKEVVAVDPPLFLTVIDKNKLESLAEVPYNQIKSQSFIDF 402
Query: 181 KAEKHESNGRKTFSKLDDAEQTWPKHPHMNL 211 K EK+ S+G+ FSKLDDAEQTWPKHPHMNL Sbjct: 403 KTEKNGSDGKNLFSKLDDAEQTWPKHPHMNL 433
BLAST of Bhi06G000616 vs. ExPASy TrEMBL
Match: A0A0A0KNP4 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G505800 PE=4 SV=1) HSP 1 Score: 340.5 bits (872), Expect = 5.0e-90 Identity = 166/210 (79.05%), Postives = 182/210 (86.67%), Query Frame = 0 Query: 1 MLDFRQGPVCNNLKISDFDPCLLTIKNANTLTLCRRNYEALIWPSLASLQGNFIFYNLKE 60 MLD RQGP CNNLKISDFDPCLLTIKNANTLTLCR NYE LI PSLASLQGNFIFYN+KE Sbjct: 223 MLDIRQGPGCNNLKISDFDPCLLTIKNANTLTLCRWNYEVLIRPSLASLQGNFIFYNIKE 282
Query: 61 LWWIDYSSNEGYNSNALVTFLQMCPALERLFVTIDPKSYGTPSTKTYSKNVWRKAKLEHL 120 LWWI +SN GYN+NAL+TFLQ+CP LERLFVTIDPK YGTPS +TY NV RK KLEHL Sbjct: 283 LWWIGSNSNGGYNNNALLTFLQICPTLERLFVTIDPKGYGTPSKETYMNNVRRKTKLEHL 342
Query: 121 KLVRLKGFMDQNEEMSLIRLIKELVSENPLFISVIDQNNLESLVEIPSNQFKSQSFLNIK 180 +LV LKGF+DQNEEM LIRLIKELV+ NP+F+SVID+N LESL +P NQ KSQSF+NIK Sbjct: 343 QLVSLKGFVDQNEEMELIRLIKELVAVNPVFMSVIDKNKLESLAGVPYNQIKSQSFINIK 402
Query: 181 AEKHESNGRKTFSKLDDAEQTWPKHPHMNL 211 EK+ SN + FSKLDDAEQTWPKHPHMNL Sbjct: 403 TEKNGSNEKYLFSKLDDAEQTWPKHPHMNL 432
BLAST of Bhi06G000616 vs. ExPASy TrEMBL
Match: A0A6J1BZC3 (F-box protein At2g39490 OS=Momordica charantia OX=3673 GN=LOC111006079 PE=4 SV=1) HSP 1 Score: 321.2 bits (822), Expect = 3.1e-84 Identity = 163/211 (77.25%), Postives = 181/211 (85.78%), Query Frame = 0 Query: 1 MLDFRQGPVCNNLKISDFDPCLLTIKNANTLTLCRRNYEALIWPSLASLQGNFIFYNLKE 60 MLDFRQGP CNNLKISDFDP LLTIKNA LTLC+ N EALIWPSL+SLQGNFIFYNLKE Sbjct: 224 MLDFRQGPGCNNLKISDFDPTLLTIKNATILTLCKSNDEALIWPSLSSLQGNFIFYNLKE 283
Query: 61 LWWIDYSSNEGYNSNALVTFLQMCPALERLFVTIDPKSYGTPSTKTYSKNVWRKAKLEHL 120 LWWIDY SNEGYNSNALVTFLQMCP LERLFVTIDPKSY TPS TYSKNV R++K +HL Sbjct: 284 LWWIDY-SNEGYNSNALVTFLQMCPTLERLFVTIDPKSYCTPSNATYSKNVLRQSKSKHL 343
Query: 121 KLVRLKGFMDQNEEMSLIRLIKELVSENPLFISVIDQNNLESLVEIPSNQFKSQSFLNIK 180 KLV LKGF D NEE+SLIR IKELVS +PLF+S +QN+LESLV+IPSN KS+SF++I+ Sbjct: 344 KLVILKGFTDHNEEISLIRQIKELVSVDPLFVSTNEQNSLESLVKIPSNHLKSESFISIR 403
Query: 181 AEKHESNGRKTFSKL-DDAEQTWPKHPHMNL 211 A HES+ +FSKL DD +QT PKHPHMNL Sbjct: 404 AAPHESDVSNSFSKLKDDVDQTTPKHPHMNL 433
BLAST of Bhi06G000616 vs. ExPASy TrEMBL
Match: A0A6J1FHP3 (F-box protein At2g39490 OS=Cucurbita moschata OX=3662 GN=LOC111445442 PE=4 SV=1) HSP 1 Score: 292.0 bits (746), Expect = 2.0e-75 Identity = 148/210 (70.48%), Postives = 164/210 (78.10%), Query Frame = 0 Query: 1 MLDFRQGPVCNNLKISDFDPCLLTIKNANTLTLCRRNYEALIWPSLASLQGNFIFYNLKE 60 MLDFRQG CNNLKIS+FDPCLLTIKNA TLTLC NYEALIWPS+ASLQGNFIFY+LKE Sbjct: 224 MLDFRQGLGCNNLKISEFDPCLLTIKNAATLTLCGWNYEALIWPSIASLQGNFIFYHLKE 283
Query: 61 LWWIDYSSNEGYNSNALVTFLQMCPALERLFVTIDPKSYGTPSTKTYSKNVWRKAKLEHL 120 LWWI Y SNE +NSNAL++FLQMCPALERLFVTIDPKSY TPS YSKNVWR+AK EHL Sbjct: 284 LWWIGY-SNEEHNSNALLSFLQMCPALERLFVTIDPKSYSTPSKPMYSKNVWRRAKSEHL 343
Query: 121 KLVRLKGFMDQNEEMSLIRLIKELVSENPLFISVIDQNNLESLVEIPSNQFKSQSFLNIK 180 KLV LKGF D+NEEMSLI++IKE+V +P+FIS ID + K Sbjct: 344 KLVSLKGFTDENEEMSLIKVIKEVVCVSPVFISAIDHST--------------------K 403
Query: 181 AEKHESNGRKTFSKLDDAEQTWPKHPHMNL 211 AEKH SNG + SKLDD +Q WPKHPHMNL Sbjct: 404 AEKHGSNGGNSSSKLDDEQQIWPKHPHMNL 412
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
AT2G39490.1 | 2.3e-23 | 40.91 | F-box family protein | [more] |
Match Name | E-value | Identity | Description | |
Q5S4V7 | 3.3e-22 | 40.91 | F-box protein At2g39490 OS=Arabidopsis thaliana OX=3702 GN=At2g39490 PE=2 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
A0A5D3C3A4 | 5.3e-92 | 79.15 | F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002850 ... | [more] |
A0A1S3CJE5 | 9.1e-92 | 78.67 | F-box protein At2g39490 OS=Cucumis melo OX=3656 GN=LOC103501647 PE=4 SV=1 | [more] |
A0A0A0KNP4 | 5.0e-90 | 79.05 | F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G505800 PE=4 ... | [more] |
A0A6J1BZC3 | 3.1e-84 | 77.25 | F-box protein At2g39490 OS=Momordica charantia OX=3673 GN=LOC111006079 PE=4 SV=1 | [more] |
A0A6J1FHP3 | 2.0e-75 | 70.48 | F-box protein At2g39490 OS=Cucurbita moschata OX=3662 GN=LOC111445442 PE=4 SV=1 | [more] |
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 188..203 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 188..210 |
None | No IPR available | PANTHER | PTHR31639:SF32 | F-BOX PLANT-LIKE PROTEIN | coord: 7..207 |
None | No IPR available | PANTHER | PTHR31639 | F-BOX PROTEIN-LIKE | coord: 7..207 |
Relationships
The following mRNA feature(s) are a part of this gene:
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