Bhi06G000090 (gene) Wax gourd (B227) v1

Overview


Name	Bhi06G000090
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	COX assembly mitochondrial protein
Location	chr6: 2117264 .. 2120813 (+)
RNA-Seq Expression	Bhi06G000090
Synteny	Bhi06G000090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTTAACAAATTAAAATAATAATAATAATAATAAACTGGGAAGCGAACTTGAGACTCCGGAGTTGGCTTGGGACGTCCTACTTCCAACGAAACCAAGGGCATTTGACTGCAAATTCCTGAAATTCCTGTGCTTCTATTGTTTTTCTGAAATGGGTTACATACAAGAAGCTCGAGAGAATCATGTGAAGAAGAAAGTAGAGGAAGGTATTATCAAATGTTGTTCTCATCCTCTACATCTTTAATTTGCTCTTGTTGTCGATGGGTCAATTTAATTTTTTAGTACATCTGCAAGTGGTGTAGAAAGCTTCTTGAAATCTGCTGATGGTTTTTGTTGTCCATTTCCAGCTTTGCGCAGCAAAATGAAGCAGAAGGCGTTGAAGGAGTGCGATCATTTCGCTTCGAAATATGCTGAATGCGCCTATGGCAGAACGTTATCCGTCGTTTTCAAGTGTCGTACTCAAGCTAAAGAATTGAACAATTGCCTTCACCTATAGTGAGTCTCTGATTGTTTTGTTTAGTTTTTTAATGGGTATATTCAATTTCAGCTGCGTTTTATTCAGATTGTTCGGATTCTCTTCTGTTCATAATAGTGTGCATTATCATCGTTCCTCGCGCACCAGTCATCAAGTTTAGACTTTTTTTTTTTTCTTAATAAGATACGATTTCATTAATGCAAGAAATAATCCAAATGATGAACAAAAGAGCCCATAAAATGGGATTACAAAATCATATTCCAATTAGCAACTAGGTAGCTGAGGACCGAGATGGTGATCTTTAAGGAACGGTAAGTGTTTACACCAAAAAAAAAAAAAAAAAAAAAAAACCATTAGAGATGGATGAATCAAGGATTTCCTTTGATGATTTTGAACTATTGTTGAAGATCCGATCACGTTTAGTCTAATTGATAAGATACACTGTTTGTGTTGAGCGTTTCAGTGGCAGTAACTTTAAGTGCTGGTTGTGATTTGTGAAAAAATCAAGCATGGATGGTAATTTCAAAGGATCAAATTTGAGTTTGGAGACATGTTGGCGGCACATGAAAGTAAGTCGAGAGCTAGAGTCATGTGGCCAAACATTTGACTCTTATGGGGATGAATAACTACTTAGTACTTACCACTTTCCATGTTCATAGAAATTGGAAGTTTTTTCTTAGAATGTGTTTGCCTACAGGCCATGAGTCACCTATGGAGTGTATTATGGCATGGGCGAATAGGCATTAAGTGACTTTTTAACGGTAGCAAAATTCTTTTAGCAGATGTCAATTGGCATGTATTGTGCTTCTTCCTTTGGAGTTTGGAGTAGAAGTTTCATTAGAGGGTATAGCCCTGAAACCAATATCTATGGCTCATCAATAGGAGCGTTAAATGATGCTATACCACAAGATTCATGTTCAAGCAAGCCTTTACAACAATGTTACGGCTCATTGTTTGGCTACAACCCAATGGCAGCACATATGGATGCCTCATGTCATGATCTAGGTCGGACAGTCTTATGCGGCAATTATCAGCTAGCAAACATTAAAGCAAATCTTGGCCTAGCAAGAGAAACAAGAGTCATCTTGGGTGTTATGACTCGTCGAGTGCGCCAAGTGTGCATCAACAATCCAATGGCCTTGTCCGTGTTAGGCTTGTTAGTTATCTCTGCTGTATTGTTGTTGAAGTAAATTTAATTTTATTGTTAGAAGGTTAGTTGGGTTGTTATTTCTCTTCGGGTTCTATTTACAGAATCCTGTATTGCTTTTGTAAACACTGATTCTGATCAAGAATTGGTTTAGTTTTTTTAGTAGAGGCAAGATGAAAACCCCAAAGCCAAGCTGGCTGTTGGTGCATAGAGCAAAAAAGAATGATGTACATACAACGTGCATGATCAAGAATCTGTTGGGAGAAGGGCTGTTGGTTAAGCCAACTATGGGCAAGAAGGTGCTCATTTGAGTAGCTTGAGTGAGTGCAACCAATTGGACTCGGTATCAAAAGGAAAAACCCAGCATTGACTTCAACGGATGTGAGGATCTTGAATAGAGTTTTGAGGCAGGAGTTACGGCAGGTAATGAGTCAGAGTAGTATCCAGCACGACATGATCTAAGGTGGCCTGATCAATATCTGTGATTTGATTGGAGAATTCATACCCTATTATAAAGAACCAAACGCTAATTCTCTAGGGCTTGGAATTCGGATGCGTGGGCAGGAAAGATAAAAGACGGTAACTAACTGATGTTTTTAGAGAAAAGCTATATATTTAACTGAATGCCAAATAGCTTCGAGAAATCTTAATAGTTAAGGTTAAGGAAATTATATGATCAATTTTATATTACTATTTAATAGTTAACAATATTTGGTTGAATCAACACTCTGCTAACGTTCTGATGCATTCTAAAGAAAAATTTTCATTCTGAAACTTGTCTTCCCTAGTTACACTTTAATGGAGAGGAAGAGGATAATAAAATTAGAGCGCCCTTTCTTTTGGATATGTAGGCGCTGGCGAGGGTGAGAGTCTTCTTGCACCATGAGGCACTATCAACGAGTAGGAGTGGGATAGTCTAAGAAATGGTTGACAAAAGCAGTGTGCATCCTCAATTTAACTTAAGTGGCCTCTATTTCTTCCCACATCCGTGGGACACAGACCTGCAACAATCCTCAGAAGAAATTTTGTCACGCTCCTTACCATAGTTTTATTGAAATATAACACCCAATTGAGTTAACATGCAATGTATCTAAGGATGGTAGTGTTACTCATATTAGGCTTCGTAAATATGTAGGACGAGTATAAATTCAAATTTTCATAACAATACAGAGCGATAGCTTATATATCCTTACCCTTGAATACATCTGTTCTTGTTTCGTTTCCAGCACTAATGAATCCGTGTTGGAAGAGATGAAGCGGGAATATGCACTTCAACACGATGGGAAGCCATGAGAAAGAGTAGTATTATGTGTCAATCGACTCAGGTGCACTTTCAGATAATGCTGTGTTGAATTTGTCACTTGAAGTATTGATATTAGTAAAAACTGAATGAAAGTTAAGGCGTCTTTCATTTTGTGGTGTGAACAAGCAAAGAAATTCTGGTTTTTTGACATAAGAATGATCTTTGATCTCTTCATGTATAAATTTCAGAGATATTCTTCTTCGTCAAATCTATAATCTTTTTACCCTTTCTTTTTGCAGGTAAATCGTTACCAGGAATGAGTTGCCTTCGAGAATATAATTATTGCCAAATACTAAAGTTCCCTTCCATCTGCCATTTAGGATCTCCTCATTGTTAGACTGGAGAGAGCCATAGTCTGATTTATGGATTTCATCGTTCGTCTTACTTGGAGTGTAAGAAAGATAAGCGATGATATAACGTTTGAATTATTTTATCGTCACCAAATTTTATATTTGTTGACTTTTGATCTCCAAATTTTAATTATTTGACCATCTGTTTTTCTAGTTTAAATTTCCATTCTCATTTTCAACATATTAATGTATTAACAAAAATCTTGAAATATATCGTTCACTATTGTGATTTAGAAACAAAGTTCTCATTATATACATATATATTTTAGATTAAAA

mRNA sequence

GTTTTAACAAATTAAAATAATAATAATAATAATAAACTGGGAAGCGAACTTGAGACTCCGGAGTTGGCTTGGGACGTCCTACTTCCAACGAAACCAAGGGCATTTGACTGCAAATTCCTGAAATTCCTGTGCTTCTATTGTTTTTCTGAAATGGGTTACATACAAGAAGCTCGAGAGAATCATGTGAAGAAGAAAGTAGAGGAAGCTTTGCGCAGCAAAATGAAGCAGAAGGCGTTGAAGGAGTGCGATCATTTCGCTTCGAAATATGCTGAATGCGCCTATGGCAGAACGTTATCCGTCGTTTTCAAGTGTCGTACTCAAGCTAAAGAATTGAACAATTGCCTTCACCTATACACTAATGAATCCGTGTTGGAAGAGATGAAGCGGGAATATGCACTTCAACACGATGGGAAGCCATGAGAAAGAGTAGTATTATGTGTCAATCGACTCAGGTAAATCGTTACCAGGAATGAGTTGCCTTCGAGAATATAATTATTGCCAAATACTAAAGTTCCCTTCCATCTGCCATTTAGGATCTCCTCATTGTTAGACTGGAGAGAGCCATAGTCTGATTTATGGATTTCATCGTTCGTCTTACTTGGAGTGTAAGAAAGATAAGCGATGATATAACGTTTGAATTATTTTATCGTCACCAAATTTTATATTTGTTGACTTTTGATCTCCAAATTTTAATTATTTGACCATCTGTTTTTCTAGTTTAAATTTCCATTCTCATTTTCAACATATTAATGTATTAACAAAAATCTTGAAATATATCGTTCACTATTGTGATTTAGAAACAAAGTTCTCATTATATACATATATATTTTAGATTAAAA

Coding sequence (CDS)

ATGGGTTACATACAAGAAGCTCGAGAGAATCATGTGAAGAAGAAAGTAGAGGAAGCTTTGCGCAGCAAAATGAAGCAGAAGGCGTTGAAGGAGTGCGATCATTTCGCTTCGAAATATGCTGAATGCGCCTATGGCAGAACGTTATCCGTCGTTTTCAAGTGTCGTACTCAAGCTAAAGAATTGAACAATTGCCTTCACCTATACACTAATGAATCCGTGTTGGAAGAGATGAAGCGGGAATATGCACTTCAACACGATGGGAAGCCATGA

Protein sequence

MGYIQEARENHVKKKVEEALRSKMKQKALKECDHFASKYAECAYGRTLSVVFKCRTQAKELNNCLHLYTNESVLEEMKREYALQHDGKP

Homology

[Close]

BLAST of Bhi06G000090 vs. TAIR 10
Match: AT5G16060.1 (Cytochrome c oxidase biogenesis protein Cmc1-like )

HSP 1 Score: 129.0 bits (323), Expect = 1.9e-30
Identity = 61/86 (70.93%), Postives = 73/86 (84.88%), Query Frame = 0


Query: 3  YIQEARENHVKKKVEEALRSKMKQKALKECDHFASKYAECAYGRTLSVVFKCRTQAKELN 62
          Y+++ARENHVKKKVEEALRSKMK KAL ECD + SKYA+CA GRT SVV+ CR QA+ELN
Sbjct: 4  YVEQARENHVKKKVEEALRSKMKAKALMECDQYVSKYAQCATGRTFSVVWTCRKQARELN 63

Query: 63 NCLHLYTNESVLEEMKREYALQHDGK 89
           CLH +TN++VLEEMKR Y +Q +GK
Sbjct: 64 TCLHQFTNDNVLEEMKRAYMVQEEGK 89

[Close]

BLAST of Bhi06G000090 vs. ExPASy Swiss-Prot
Match: Q552P9 (Uncharacterized protein DDB_G0275933 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0275933 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.8e-06
Identity = 26/66 (39.39%), Postives = 41/66 (62.12%), Query Frame = 0


Query: 16 VEEALRSKMKQKALKECDHFASKYAECAYGRTLSVVFKCRTQAKELNNCLHLYTNESVLE 75
          V+  LR K+K ++LKEC    + +A+C+  + +SVV++CR   + + NCL  YT    L 
Sbjct: 30 VDSYLRQKLKDQSLKECSSHVAAFADCSKDKYISVVWECRELQQLMKNCLVEYTTSERLI 89

Query: 76 EMKREY 82
           MKRE+
Sbjct: 90 GMKREW 95

[Close]

BLAST of Bhi06G000090 vs. ExPASy TrEMBL
Match: A0A1S3CA82 (COX assembly mitochondrial protein OS=Cucumis melo OX=3656 GN=LOC103498594 PE=3 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 6.9e-41
Identity = 84/89 (94.38%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 1  MGYIQEARENHVKKKVEEALRSKMKQKALKECDHFASKYAECAYGRTLSVVFKCRTQAKE 60
          MGYIQEARENHVKKKVEEALRSKMKQKALKECDH+ASKYAECAYGRTLSV+FKCR QAKE
Sbjct: 1  MGYIQEARENHVKKKVEEALRSKMKQKALKECDHYASKYAECAYGRTLSVIFKCRNQAKE 60

Query: 61 LNNCLHLYTNESVLEEMKREYALQHDGKP 90
          LNNCLHLYTN+SVL+EMKREYALQHDGKP
Sbjct: 61 LNNCLHLYTNDSVLDEMKREYALQHDGKP 89

[Close]

BLAST of Bhi06G000090 vs. ExPASy TrEMBL
Match: A0A6J1K100 (COX assembly mitochondrial protein OS=Cucurbita maxima OX=3661 GN=LOC111489669 PE=3 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 4.5e-40
Identity = 83/89 (93.26%), Postives = 87/89 (97.75%), Query Frame = 0


Query: 1  MGYIQEARENHVKKKVEEALRSKMKQKALKECDHFASKYAECAYGRTLSVVFKCRTQAKE 60
          MGYIQEARENHVKKKVEEALRSKMKQKA+KECDH+ASKYAECAYGRTLSVVFKCR QAKE
Sbjct: 1  MGYIQEARENHVKKKVEEALRSKMKQKAMKECDHYASKYAECAYGRTLSVVFKCRNQAKE 60

Query: 61 LNNCLHLYTNESVLEEMKREYALQHDGKP 90
          LNNCLH YTN++VLEEMKREYALQHDGKP
Sbjct: 61 LNNCLHQYTNDTVLEEMKREYALQHDGKP 89

[Close]

BLAST of Bhi06G000090 vs. ExPASy TrEMBL
Match: A0A6J1FIP8 (COX assembly mitochondrial protein OS=Cucurbita moschata OX=3662 GN=LOC111444640 PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 2.9e-39
Identity = 82/89 (92.13%), Postives = 86/89 (96.63%), Query Frame = 0


Query: 1  MGYIQEARENHVKKKVEEALRSKMKQKALKECDHFASKYAECAYGRTLSVVFKCRTQAKE 60
          MGYIQEARENHVKKKVEEALRSKMKQKA+KECDH+ASKYAECAYGRTLSVVFKCR QAKE
Sbjct: 1  MGYIQEARENHVKKKVEEALRSKMKQKAMKECDHYASKYAECAYGRTLSVVFKCRNQAKE 60

Query: 61 LNNCLHLYTNESVLEEMKREYALQHDGKP 90
          LNNCLH YTN++VLEEMKREYA QHDGKP
Sbjct: 61 LNNCLHQYTNDTVLEEMKREYAHQHDGKP 89

[Close]

BLAST of Bhi06G000090 vs. ExPASy TrEMBL
Match: A0A0A0KVX6 (COX assembly mitochondrial protein OS=Cucumis sativus OX=3659 GN=Csa_5G644540 PE=3 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 2.4e-38
Identity = 81/89 (91.01%), Postives = 85/89 (95.51%), Query Frame = 0


Query: 1  MGYIQEARENHVKKKVEEALRSKMKQKALKECDHFASKYAECAYGRTLSVVFKCRTQAKE 60
          MGYIQEARENHVKKKVEEALRSKMKQKALKECD +ASKYAECAYGRTLSVVFKCR QAKE
Sbjct: 1  MGYIQEARENHVKKKVEEALRSKMKQKALKECDRYASKYAECAYGRTLSVVFKCRNQAKE 60

Query: 61 LNNCLHLYTNESVLEEMKREYALQHDGKP 90
          LNNCLH YTN+S+L+EMKREYALQ DGKP
Sbjct: 61 LNNCLHSYTNDSILDEMKREYALQQDGKP 89

[Close]

BLAST of Bhi06G000090 vs. ExPASy TrEMBL
Match: A0A6J1BW91 (COX assembly mitochondrial protein OS=Momordica charantia OX=3673 GN=LOC111006094 PE=3 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.0e-36
Identity = 78/88 (88.64%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 1  MGYIQEARENHVKKKVEEALRSKMKQKALKECDHFASKYAECAYGRTLSVVFKCRTQAKE 60
          MGYIQEARENHVKKKVEEALRSKMKQKALKECDH+AS+YAECAYGRTLSVV+KCR+QAKE
Sbjct: 1  MGYIQEARENHVKKKVEEALRSKMKQKALKECDHYASRYAECAYGRTLSVVWKCRSQAKE 60

Query: 61 LNNCLHLYTNESVLEEMKREYALQHDGK 89
          LN+CLH YTN++VLEEMKR+YALQ DGK
Sbjct: 61 LNSCLHQYTNDTVLEEMKRDYALQQDGK 88

The following BLAST results are available for this feature:

BLAST of Bhi06G000090 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G16060.1	1.9e-30	70.93	Cytochrome c oxidase biogenesis protein Cmc1-like	[more]

BLAST of Bhi06G000090 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q552P9	1.8e-06	39.39	Uncharacterized protein DDB_G0275933 OS=Dictyostelium discoideum OX=44689 GN=DDB...	[more]

BLAST of Bhi06G000090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CA82	6.9e-41	94.38	COX assembly mitochondrial protein OS=Cucumis melo OX=3656 GN=LOC103498594 PE=3 ...	[more]
A0A6J1K100	4.5e-40	93.26	COX assembly mitochondrial protein OS=Cucurbita maxima OX=3661 GN=LOC111489669 P...	[more]
A0A6J1FIP8	2.9e-39	92.13	COX assembly mitochondrial protein OS=Cucurbita moschata OX=3662 GN=LOC111444640...	[more]
A0A0A0KVX6	2.4e-38	91.01	COX assembly mitochondrial protein OS=Cucumis sativus OX=3659 GN=Csa_5G644540 PE...	[more]
A0A6J1BW91	1.0e-36	88.64	COX assembly mitochondrial protein OS=Momordica charantia OX=3673 GN=LOC11100609...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013892	Cytochrome c oxidase biogenesis protein Cmc1-like	PFAM	PF08583	Cmc1	coord: 20..81 e-value: 4.6E-15 score: 55.4
IPR013892	Cytochrome c oxidase biogenesis protein Cmc1-like	PANTHER	PTHR22977	COX ASSEMBLY MITOCHONDRIAL PROTEIN	coord: 2..86
None	No IPR available	PANTHER	PTHR22977:SF5	COX ASSEMBLY MITOCHONDRIAL PROTEIN HOMOLOG	coord: 2..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi06M000090	Bhi06M000090	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005739	mitochondrion