CmaCh19G010640 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh19G010640
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr19: 8949332 .. 8950600 (-)
RNA-Seq Expression	CmaCh19G010640
Synteny	CmaCh19G010640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCATACAGTGAATGGATGGCCTCGCCTGGACTGCGCAGAGGTTTCCAACGATGGAGGAGGAACGGCGGTCAGTTTGATTTTCCGGCGAGAAAATGGGAGAGTGAGGAGGAAGAGAGGGAAAAGAGGCGGTATGCACGGTAAAACATCGACGAGGGAAACGATTAATGGTGCAGCGAAGAAGAGAGAACGCGCGCAATGGAGGTCAGAGTAACGAAGCAATATTACGTAAAATTACAATTATACCCTTGCTAGTTGCAGCACAACAAATTTCTTTTTATAAATAAAAAAATTCAAAATTGTAAATTACCTTTTTAGTCTTCTAAGTTAATAAGCACCTGCCACGCACGTGGTTAATATATTTTTCATTCCATTTGAATGATAATTAATAAGCATTTGACATAAACTTACTAAATAATTAAAAAAAAAAAAAATAGTGACAAACTCTATATTCTTTTTTAAAAATTTTAGGTTAATTTATAATGAATAAATATATTTTCATTAATTTTAAATGGTAAATATTACTTGCTTTATTCTTCTTCCTTCTGCATTTCCCCCATAGATTACCCTTTGTTTAGTGGTTTCTTTCTAAGGATTCACCATTTTTCAGTTGAAATTAGCTCTTAGCTCATAAGGGTTCGTTTCAAAATAGGGTTTTTGGAAAGACCCACCTTTTACTTTCTGCATGCAGCAATCGGGTACGTACCCACTTTGTGAATTTTCATGATTAATAATGTCTTTTCTTTTTCTGGGAATTTAAGATTGTTTGTGTATAGAAGTTTTAATGATCAGTAACATTATTTCCTTATTGGTTATGCTTGCGTGGGTTGAAACAGATATGAATCGAAGATGACAATGGAGAAAGCTTCATCTCGAGATCATCAGCAATGGCTGACATACTGGGTTTTGCATCGTGTCATGGTATGAAGATGCCATTTTGTGCAAGTTTTATACGTTAAAACTTAGTGTTTTCTGAGTTTATGTCATATTTGCTTGACATACTTTTATTATATCGATAGAGACGTTGTTCTTGTTTATATATCATGGATCTCGACGATTGATATCGAATAAGATGGTAGGATTCCACTTTGGCGATATAAAGTTGGTGTTTAATTTGCCTGTGGTTATGAGAATTTTGCAATGAAGTTTGTCGGGTTTGGAAGTAGTGAAGAGGGACCCGAATACGATTTCGGGGAGGAGAAGAAAGAAAAAGAAGAGGTCGAGAATGAGTATAAGGACGAGAACGAAGATAAGAAAATCTTTCGAGCTTGA

mRNA sequence

GCATACAGTGAATGGATGGCCTCGCCTGGACTGCGCAGAGGTTTCCAACGATGGAGGAGGAACGGCGGTCAGTTTGATTTTCCGGCGAGAAAATGGGAGAGTGAGGAGGAAGAGAGGGAAAAGAGGCGGTATGCACGGTAAAACATCGACGAGGGAAACGATTAATGGTGCAGCGAAGAAGAGAGAACGCGCGCAATGGAGATATGAATCGAAGATGACAATGGAGAAAGCTTCATCTCGAGATCATCAGCAATGGCTGACATACTGGGTTTTGCATCGTGTCATGTTTGTCGGGTTTGGAAGTAGTGAAGAGGGACCCGAATACGATTTCGGGGAGGAGAAGAAAGAAAAAGAAGAGGTCGAGAATGAGTATAAGGACGAGAACGAAGATAAGAAAATCTTTCGAGCTTGA

Coding sequence (CDS)

ATGCACGGTAAAACATCGACGAGGGAAACGATTAATGGTGCAGCGAAGAAGAGAGAACGCGCGCAATGGAGATATGAATCGAAGATGACAATGGAGAAAGCTTCATCTCGAGATCATCAGCAATGGCTGACATACTGGGTTTTGCATCGTGTCATGTTTGTCGGGTTTGGAAGTAGTGAAGAGGGACCCGAATACGATTTCGGGGAGGAGAAGAAAGAAAAAGAAGAGGTCGAGAATGAGTATAAGGACGAGAACGAAGATAAGAAAATCTTTCGAGCTTGA

Protein sequence

MHGKTSTRETINGAAKKRERAQWRYESKMTMEKASSRDHQQWLTYWVLHRVMFVGFGSSEEGPEYDFGEEKKEKEEVENEYKDENEDKKIFRA

Homology

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BLAST of CmaCh19G010640 vs. NCBI nr
Match: KAG7012034.1 (hypothetical protein SDJN02_26942, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 107.1 bits (266), Expect = 8.5e-20
Identity = 59/76 (77.63%), Postives = 63/76 (82.89%), Query Frame = 0


Query: 25 YESKMTMEKASSRDHQQWLTYWVLHRVM-------FVGFGSSEEGPEYDFGEEKKEKEEV 84
          YESKMT EKASSRDHQQWLT WVLH +M        VGFGSSEEGP+YDFGEEKKEKEEV
Sbjct: 18 YESKMTTEKASSRDHQQWLTCWVLHHIMDSGYKVGVVGFGSSEEGPKYDFGEEKKEKEEV 77

Query: 85 ENEYKDENEDKKIFRA 94
          E++  DENEDKKIFRA
Sbjct: 78 EDD--DENEDKKIFRA 91

The following BLAST results are available for this feature:

BLAST of CmaCh19G010640 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh19G010640 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh19G010640 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7012034.1	8.5e-20	77.63	hypothetical protein SDJN02_26942, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CmaCh19G010640 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 67..93
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..93
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh19G010640.1	CmaCh19G010640.1	mRNA