CmaCh12G002810 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh12G002810
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr12: 1451478 .. 1452272 (-)
RNA-Seq ExpressionCmaCh12G002810
SyntenyCmaCh12G002810
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTGGCCTAATTGTGAAGGTCGGGCTCTATAATGAGTATGCTGCCGGGATTGTGATTGAGGAGTTTGGGGCACGCCATAACGTGACCCGTAATTGAATGCAGTAACTTTCACTTATACAATGCAAAGTGGTGGAGCTACTCCTTATTTCATGGTTAGATCCTCACCTTATCAAACTGCTGAGCACCTTGACGCTAGGATCTTTTGTCATTCGAGTTATCAACGAACGATGCAGGTGAATAGCCAACAAACTATGTTTTCTTTCATTGATCTCGAGGCTTGAATGTGACGAAGTATTCATTATACAGTACATTATCGCTTACACTGCCATTGCTCTTAAGGGGACCATCTAGCAGTACACTTTACAGTGCCCTTGGTGTATGCTGTCAAAGCCTGGAACACTGGCGATGCTACAGAGAAAGTCGTGGTTTGAGTAACAGTGTTGATGCCTATTACTTTAGAGATGAACTGGTGACACAAGTTAATGAAGTTCTGGTGGTGTTGGTGAAAGAGACAGTTCGTTCGACCCTCGATAATGGAGTCGACTTGTTCTTTTCCTCTGTCCAGCCTACCTTCTAATCGCGTTCCGACGTTCAGCTCACCCCAAACTGAAGGAATCTAGAAAAGAAGACATTCAGTGCATATGTTCGAGTTCGTTTGGTACTTGGATGGATCAGAGGGCATGTGTAGGGAGTAAGTTTCGTCTTCAGAGGACATGTACAGGAGATGGCGATGAAATGTCGTGCAAGTCGGGGCAATGGGGGGATATTGCGCCGGGGCTATCGGGCCAATGA

mRNA sequence

ATGCCTGGCCTAATTGTGAAGGTCGGGCTCTATAATGAGTATGCTGCCGGGATTGTGATTGAGGAGTTTGGGGCACGCCATAACGTGACCCATCCTCACCTTATCAAACTGCTGAGCACCTTGACGCTAGGATCTTTTGTCATTCGAGTTATCAACGAACGATGCAGTACATTATCGCTTACACTGCCATTGCTCTTAAGGGGACCATCTAGCAGTACACTTTACAGTGCCCTTGGTGTATGCTGTCAAAGCCTGGAACACTGGCGATGCTACAGAGAAAGTCGTGGTTTGAGTAACAGTGTTGATGCCTATTACTTTAGAGATGAACTGGTGACACAAGTTAATGAAGTTCTGGTGGTGTTGGTGAAAGAGACAGTTCCTCACCCCAAACTGAAGGAATCTAGAAAAGAAGACATTCAGTGCATATGTTCGAGTTCGTTTGGTACTTGGATGGATCAGAGGGCATGTGTAGGGAGTAAGTTTCGTCTTCAGAGGACATGTACAGGAGATGGCGATGAAATGTCGTGCAAGTCGGGGCAATGGGGGGATATTGCGCCGGGGCTATCGGGCCAATGA

Coding sequence (CDS)

ATGCCTGGCCTAATTGTGAAGGTCGGGCTCTATAATGAGTATGCTGCCGGGATTGTGATTGAGGAGTTTGGGGCACGCCATAACGTGACCCATCCTCACCTTATCAAACTGCTGAGCACCTTGACGCTAGGATCTTTTGTCATTCGAGTTATCAACGAACGATGCAGTACATTATCGCTTACACTGCCATTGCTCTTAAGGGGACCATCTAGCAGTACACTTTACAGTGCCCTTGGTGTATGCTGTCAAAGCCTGGAACACTGGCGATGCTACAGAGAAAGTCGTGGTTTGAGTAACAGTGTTGATGCCTATTACTTTAGAGATGAACTGGTGACACAAGTTAATGAAGTTCTGGTGGTGTTGGTGAAAGAGACAGTTCCTCACCCCAAACTGAAGGAATCTAGAAAAGAAGACATTCAGTGCATATGTTCGAGTTCGTTTGGTACTTGGATGGATCAGAGGGCATGTGTAGGGAGTAAGTTTCGTCTTCAGAGGACATGTACAGGAGATGGCGATGAAATGTCGTGCAAGTCGGGGCAATGGGGGGATATTGCGCCGGGGCTATCGGGCCAATGA

Protein sequence

MPGLIVKVGLYNEYAAGIVIEEFGARHNVTHPHLIKLLSTLTLGSFVIRVINERCSTLSLTLPLLLRGPSSSTLYSALGVCCQSLEHWRCYRESRGLSNSVDAYYFRDELVTQVNEVLVVLVKETVPHPKLKESRKEDIQCICSSSFGTWMDQRACVGSKFRLQRTCTGDGDEMSCKSGQWGDIAPGLSGQ
Homology
[Close]
BLAST of CmaCh12G002810 vs. NCBI nr
Match: KAG6585415.1 (hypothetical protein SDJN03_18148, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 123.6 bits (309), Expect = 1.8e-24
Identity = 80/153 (52.29%), Postives = 85/153 (55.56%), Query Frame = 0 

Query: 32  PHLIKLLSTLTLGSFVIRVINERCSTLSLTLPLLLRGPSSSTLYSALGVCCQSLEHWRCY 91
           PHLIKLL        + RV  ER            RGPSSSTLYSALGVCCQSLEHWRCY
Sbjct: 49  PHLIKLL--------ISRVSGER-----------RRGPSSSTLYSALGVCCQSLEHWRCY 108

Query: 92  RESRGLSNSVDAYYFRDELVTQVNEVLVVLVKETVPHPKLKESRKEDIQCICSSSFGTWM 151
           RESRGLSNSVDA Y RDELVTQVNEV+VVLVKETV                         
Sbjct: 109 RESRGLSNSVDANYIRDELVTQVNEVVVVLVKETV------------------------- 143

Query: 152 DQRACVGSKFRLQRTCTGDGDEMSCKSGQWGDI 185
                        R+  GDGD +S +SGQWG I
Sbjct: 169 -------------RSTLGDGD-VSYESGQWGGI 143

[Close]
BLAST of CmaCh12G002810 vs. NCBI nr
Match: KAG7020334.1 (hypothetical protein SDJN02_17018, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 118.2 bits (295), Expect = 7.6e-23
Identity = 57/60 (95.00%), Postives = 58/60 (96.67%), Query Frame = 0 

Query: 67  RGPSSSTLYSALGVCCQSLEHWRCYRESRGLSNSVDAYYFRDELVTQVNEVLVVLVKETV 126
           RGPSSSTLYSALGVCCQSLEHWRCYRESRGLSNSVDA Y RDELVTQVNEV+VVLVKETV
Sbjct: 6   RGPSSSTLYSALGVCCQSLEHWRCYRESRGLSNSVDANYIRDELVTQVNEVVVVLVKETV 65

The following BLAST results are available for this feature:
BLAST of CmaCh12G002810 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh12G002810 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh12G002810 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6585415.11.8e-2452.29hypothetical protein SDJN03_18148, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7020334.17.6e-2395.00hypothetical protein SDJN02_17018, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmaCh12G002810 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh12G002810.1CmaCh12G002810.1mRNA