CmaCh12G002020 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh12G002020
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionRibosomal RNA small subunit methyltransferase A
LocationCma_Chr12: 955584 .. 959011 (+)
RNA-Seq ExpressionCmaCh12G002020
SyntenyCmaCh12G002020
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCAAAAAAGCGTTTCATCTTTAACTTCTTCAATTTTGACGATCAGTTGGCTGAAATTTTCGGTGTTCAATTTGAATTCGTCGGCCTCTGAATCGTCCATTTGCAGAAGACCGTAGCCATTGGAGGTTTTGCTTTGAGGTTTGTTCGTTAAGGTATTATAGCTCTTTCTACGTTTCTTTAGCTTTAAATTTTTGCCTTATCGCTATAGATTGTGTGTTTGGATCATTCTGCGCAAGAATCCTGGATTCCTTTTTGTTACTTTCGGTTGCAATGTTTGAAAAGCATGTTTTCGGAAAGTCAATTACTAGCGGGAGGAGGTTGCTTCAGGAAGAGATTGATTTAAGTTTCTGTCTGTGTTTGGAATTTATGAGTTCTAAGGATTTAGAGGGTATTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTAAATTTTCGGTGCTTGAATGAGTCTGAAACCTAACAAGAGAACGCGATTGCTTTTTTTTTCTTCATCATTTTTTAAAATAGGAACAATATTATATTATAGGTTCTCTTGATCTTGCCAGCCTCTTGAGTAGAAGCAATCTCTCAAATTAAAAATGGGAAGAAAGATCGTTGTCAGCCTTAATTGTGAACTTTGTGGGAGATAAATTTAGCAAAGCCGTGTTTCCTTTTTTGGTTACAGCTCGATCTTGTCTAGGTAGTTTATAGGTAATGGTTATTGTTTTGATTTGTCTATTTCCAATTCTGCGAAAGCTTCTACCTGGATTGCCACGCGATTTGGACTTAGAAAATTGAGTCGTTGCCTGTTTTGTCATGTTTTTCTGCTAAAATTCTTGAAGAATTTTGCATTTTAAGCGTGAAGTAAGGTGGAAAGAGTCCATTATATCTCCCTTCTTTCATATTTTTTTCCTTCCTGAGCTTGCTGGATCCTTTGGATACATTCAAGACTATTTTTTAATCTATGCTACATTACGTGCTATGGAATTTACTTGTTAGTTTCTTCTTTTTCTTAACTTGTACAGTCTATGATTGCAGCAATTTTTCTTTTTGTCGTTCCGAGATGTAGTTGATCATTTTCTTCTATCCTTGACAGGAAAAAAAAAACTGCTCCATTTCACAACCGTGGCCTTGGAATCTACCTGTAATTAGCGAGTTTTTCATTGGAGAGACTTGTTATTCATTAGTAAAGAAAATTGAATTCACACATGTCTGTGGCATTTCCCCAACTCTCCTGGTGGTCGTGGAGCGGGAAGCATAAAGAACCTCGAACCTCTAATGGATCCGCTTTTAATGCTTCACTAGATACAGTCATTCGGGAACCGGATACTCTAAAATTTCCTTTAGCAAATGGTGCCAACATATCATCCTCGTCTAGAAGGGTGAGGCGGAAATGGCATAGTCGAGAAGAAAGGAAAATTGATAGGGAATACGACATTGTTCTTGTTCCATCTGATGGAGGATGTGTTTCAGGGTCAGAATCTGATGATTCGGATTGGTCAATTGGATGGTCAGAACCCCATGGACCTGGATTCCAGAGCGATGATGAAACAGACAACAGTTTTGCAGTACTGGTTCCATGTTATGGACGCGTTTACAATGATTTTGTGGATGAAACAAAGAACAGTATCCTAAGTGCTGCTGGGAACATCAACGATAGCTTTTCTGCAGGTAAGAGTTGCTTCTTCCATGCTTGCATTTGGATTGGGGTTGGGTGTTAGTTATTGCTTTTGCCTTCCAAAATATTCTTATAGTTCTCTTTCGTGTATAGTGAACCCAAGAACTTCATACATATCCCCTGATAGCTTAATTTCATAATCTAGAATCAACTTATACCGCAAATGTTGGACATCAGTTCACGTAGCCACATTCGAAAGAATGAAAAATCTTTTATGTAATTTAGCTGTTGTCTCATATCCACAGACTCATCTATTTTTAGGAAGATGATGCTATTTCCTTTTCTGAACTTAATTTCTAGGGAAAAATTCTTCTTGACGCATTCTCAATAGGTTGAAATGCGACACCCTCAGTTTAGTAAATCTTGACAGTTGGGCATTAGAAAATATCAGCGAATCAAAGAACAACTGAGTGATCCATCCTTTTTTCCAAGAAAAGGATGGCATCAGATCCTTGTTTGCACTTCTTGTAGCAGGGTTAGCATAACACTATGTACATTTATGTAGTGAGCAAAGATCTCTCGAATGCTAGTTACGATTTCTGGTGTAAGTAAAGAATCTCTGGAGGACATGTAGGAGCCATTAGGTGAAAGTGATTTTAACCCTTCAAACCAATCCAGTAGTTTAATTTATTCTCTATATGTGCAAGTGAGGTAGCAAATAGATATATATCCTGATATAATGACAAATATAGAATGATAGAATCAAACTCAACATCTTTCAGTTTGGAAATTTCTCATACACCTTGTTCGTACAGAGACTCTCAATATGTAACTTCAGAGAACTATATTCTATTTGTTTTGAGGCTTTACAGCAATATTCACAGTTTCCTTGTTCTGATTGATTTCATCTGCCTTTCATATTACATGATTGTTCTTCTGGCCAATGTGAATAATACTAAATAGTAGTTAGTTACATGTGAAATTTCTTTTTTGGTTGCTTTATGTCTGTTCTAAGCTGATTTTGTCTGCACTGCTCTTTTTCATGGAGCAGAGAGCAAGAAATATATGGAACAATGGCTGTCCTCTCTTCAGAGCTGCTGATGCACAGGGTTTATAATTGCTGTACGCATCGGATGCTAATGCCCTGTTCCAAGACGAAAGCATTCTGTGATCTTTAGCTATTCAAAAATTACAAAAATATGGAAAAAAGAAAAGAAAAAAGATTGTAAAAGTCTATCTATTCTGGCTTCGTTTGATATACAACTAAGAAGCAAATTGGATGAAAAGATTGGATCCATTGATTCCAATCAGTGGGTGCAGGTTGTGCAGGTCGAATCTTTTCCATTCTTTTGAGCATGCTTTTAAGAAGAGTGAGTTGAAAAAAGTATGATCTTATCTGGTGGGATGAAGCTTGTTAAAATGGGATGTAAATACTTCGAGACTCCTTTGTAAATATGGAAGGGAGAAAGGAGGAAAGGGTTGAGCCAAGCAGCCGAGGCTTGGAGAAAAAGAGCATTAAAAAAGAGGTGGAAGTGCAGGTATGGTGTAATTCTTTGAAGTTCAGTTCATGTATAAAGTGGGAAGTCTCAACTTTAATTGATCTGAACGTTGCTGTAAATAGTGACTCATTTGTATGCATTGTGTGATCTGAGTGGGTTTGGTTCATTTAAACGTTGCTGTATATGGTGACCTCATTTGTAAAATTTGTTGCACATAGTAACACAGCTGTGCACCCGTGTAATGTCTCTCCCTATTCAATGTAATATTCTTTAGAAACTCTATTTTAATAAGCTAAAAAGTCTACATTAAATAATAAAATCAACATTTTGATGAAAA

mRNA sequence

TCAAAAAAGCGTTTCATCTTTAACTTCTTCAATTTTGACGATCAGTTGGCTGAAATTTTCGGTGTTCAATTTGAATTCGTCGGCCTCTGAATCGTCCATTTGCAGAAGACCGTAGCCATTGGAGGTTTTGCTTTGAGGTTTGTTCGTTAAGGAAAAAAAAAACTGCTCCATTTCACAACCGTGGCCTTGGAATCTACCTGTAATTAGCGAGTTTTTCATTGGAGAGACTTGTTATTCATTAGTAAAGAAAATTGAATTCACACATGTCTGTGGCATTTCCCCAACTCTCCTGGTGGTCGTGGAGCGGGAAGCATAAAGAACCTCGAACCTCTAATGGATCCGCTTTTAATGCTTCACTAGATACAGTCATTCGGGAACCGGATACTCTAAAATTTCCTTTAGCAAATGGTGCCAACATATCATCCTCGTCTAGAAGGGTGAGGCGGAAATGGCATAGTCGAGAAGAAAGGAAAATTGATAGGGAATACGACATTGTTCTTGTTCCATCTGATGGAGGATGTGTTTCAGGGTCAGAATCTGATGATTCGGATTGGTCAATTGGATGGTCAGAACCCCATGGACCTGGATTCCAGAGCGATGATGAAACAGACAACAGTTTTGCAGTACTGGTTCCATGTTATGGACGCGTTTACAATGATTTTGTGGATGAAACAAAGAACAGTATCCTAAGTGCTGCTGGGAACATCAACGATAGCTTTTCTGCAGAGAGCAAGAAATATATGGAACAATGGCTGTCCTCTCTTCAGAGCTGCTGATGCACAGGGTTTATAATTGCTGTACGCATCGGATGCTAATGCCCTGTTCCAAGACGAAAGCATTCTGTGATCTTTAGCTATTCAAAAATTACAAAAATATGGAAAAAAGAAAAGAAAAAAGATTGTAAAAGTCTATCTATTCTGGCTTCGTTTGATATACAACTAAGAAGCAAATTGGATGAAAAGATTGGATCCATTGATTCCAATCAGTGGGTGCAGGTTGTGCAGGTCGAATCTTTTCCATTCTTTTGAGCATGCTTTTAAGAAGAGTGAGTTGAAAAAAGTATGATCTTATCTGGTGGGATGAAGCTTGTTAAAATGGGATGTAAATACTTCGAGACTCCTTTGTAAATATGGAAGGGAGAAAGGAGGAAAGGGTTGAGCCAAGCAGCCGAGGCTTGGAGAAAAAGAGCATTAAAAAAGAGGTGGAAGTGCAGGTATGGTGTAATTCTTTGAAGTTCAGTTCATGTATAAAGTGGGAAGTCTCAACTTTAATTGATCTGAACGTTGCTGTAAATAGTGACTCATTTGTATGCATTGTGTGATCTGAGTGGGTTTGGTTCATTTAAACGTTGCTGTATATGGTGACCTCATTTGTAAAATTTGTTGCACATAGTAACACAGCTGTGCACCCGTGTAATGTCTCTCCCTATTCAATGTAATATTCTTTAGAAACTCTATTTTAATAAGCTAAAAAGTCTACATTAAATAATAAAATCAACATTTTGATGAAAA

Coding sequence (CDS)

ATGTCTGTGGCATTTCCCCAACTCTCCTGGTGGTCGTGGAGCGGGAAGCATAAAGAACCTCGAACCTCTAATGGATCCGCTTTTAATGCTTCACTAGATACAGTCATTCGGGAACCGGATACTCTAAAATTTCCTTTAGCAAATGGTGCCAACATATCATCCTCGTCTAGAAGGGTGAGGCGGAAATGGCATAGTCGAGAAGAAAGGAAAATTGATAGGGAATACGACATTGTTCTTGTTCCATCTGATGGAGGATGTGTTTCAGGGTCAGAATCTGATGATTCGGATTGGTCAATTGGATGGTCAGAACCCCATGGACCTGGATTCCAGAGCGATGATGAAACAGACAACAGTTTTGCAGTACTGGTTCCATGTTATGGACGCGTTTACAATGATTTTGTGGATGAAACAAAGAACAGTATCCTAAGTGCTGCTGGGAACATCAACGATAGCTTTTCTGCAGAGAGCAAGAAATATATGGAACAATGGCTGTCCTCTCTTCAGAGCTGCTGA

Protein sequence

MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVRRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDETDNSFAVLVPCYGRVYNDFVDETKNSILSAAGNINDSFSAESKKYMEQWLSSLQSC
Homology
[Close]
BLAST of CmaCh12G002020 vs. ExPASy TrEMBL
Match: A0A6J1KME1 (uncharacterized protein LOC111495931 OS=Cucurbita maxima OX=3661 GN=LOC111495931 PE=4 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 7.9e-94
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0 

Query: 1   MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVR 60
           MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVR
Sbjct: 1   MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVR 60

Query: 61  RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDETDNSFA 120
           RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDETDNSFA
Sbjct: 61  RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDETDNSFA 120

Query: 121 VLVPCYGRVYNDFVDETKNSILSAAGNINDSFSAESKKYMEQWLSSLQSC 171
           VLVPCYGRVYNDFVDETKNSILSAAGNINDSFSAESKKYMEQWLSSLQSC
Sbjct: 121 VLVPCYGRVYNDFVDETKNSILSAAGNINDSFSAESKKYMEQWLSSLQSC 170

[Close]
BLAST of CmaCh12G002020 vs. ExPASy TrEMBL
Match: A0A6J1GID2 (uncharacterized protein LOC111454487 OS=Cucurbita moschata OX=3662 GN=LOC111454487 PE=4 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 1.7e-93
Identity = 169/170 (99.41%), Postives = 170/170 (100.00%), Query Frame = 0 

Query: 1   MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVR 60
           MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVR
Sbjct: 1   MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVR 60

Query: 61  RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDETDNSFA 120
           RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDETDNSFA
Sbjct: 61  RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDETDNSFA 120

Query: 121 VLVPCYGRVYNDFVDETKNSILSAAGNINDSFSAESKKYMEQWLSSLQSC 171
           VLVPCYGRVYNDFVDETKNSILSA+GNINDSFSAESKKYMEQWLSSLQSC
Sbjct: 121 VLVPCYGRVYNDFVDETKNSILSASGNINDSFSAESKKYMEQWLSSLQSC 170

[Close]
BLAST of CmaCh12G002020 vs. ExPASy TrEMBL
Match: A0A1S3BB05 (uncharacterized protein LOC103488121 OS=Cucumis melo OX=3656 GN=LOC103488121 PE=4 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 6.0e-86
Identity = 157/171 (91.81%), Postives = 163/171 (95.32%), Query Frame = 0 

Query: 1   MSVAFPQLSWWSWSGKHKEPRTSN-GSAFNASLDTVIREPDTLKFPLANGANISSSSRRV 60
           MSVAFPQLSWW WSGKHKEPR+SN GSA NASLDT  RE DTLKFPL NGANISSSSRRV
Sbjct: 1   MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRV 60

Query: 61  RRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDETDNSF 120
           +RKWHSREERK+DREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDE+DNSF
Sbjct: 61  KRKWHSREERKVDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDESDNSF 120

Query: 121 AVLVPCYGRVYNDFVDETKNSILSAAGNINDSFSAESKKYMEQWLSSLQSC 171
           AVLVPCYGR+YNDFVDETKNSILSA GNINDSFSAESKKYMEQWLSSLQ+C
Sbjct: 121 AVLVPCYGRIYNDFVDETKNSILSAIGNINDSFSAESKKYMEQWLSSLQNC 171

[Close]
BLAST of CmaCh12G002020 vs. ExPASy TrEMBL
Match: A0A6J1BVP6 (uncharacterized protein LOC111005141 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111005141 PE=4 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 5.1e-85
Identity = 153/170 (90.00%), Postives = 162/170 (95.29%), Query Frame = 0 

Query: 1   MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVR 60
           M+VAFPQLSWW WSGK+KEPR+SNGS  NASLDT IREPDTLKFPL NGANISSSSRRV+
Sbjct: 1   MAVAFPQLSWWLWSGKNKEPRSSNGSPLNASLDTAIREPDTLKFPLVNGANISSSSRRVK 60

Query: 61  RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDETDNSFA 120
           RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEP+GPGFQSDD+ DNSFA
Sbjct: 61  RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPNGPGFQSDDDPDNSFA 120

Query: 121 VLVPCYGRVYNDFVDETKNSILSAAGNINDSFSAESKKYMEQWLSSLQSC 171
           VLVPCYG +YNDFVDETKNSILSA GNINDSFSA+SKKYMEQWLSSLQ+C
Sbjct: 121 VLVPCYGHMYNDFVDETKNSILSAVGNINDSFSADSKKYMEQWLSSLQNC 170

[Close]
BLAST of CmaCh12G002020 vs. ExPASy TrEMBL
Match: A0A6J1K730 (uncharacterized protein LOC111492231 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111492231 PE=4 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 1.4e-79
Identity = 148/171 (86.55%), Postives = 158/171 (92.40%), Query Frame = 0 

Query: 1   MSVAFPQLSWWSWSGKHKEPRTSN-GSAFNASLDTVIREPDTLKFPLANGANISSSSRRV 60
           MSVAFPQLSWW  SGKHKEP++SN GSA NASLDT  RE DTLKF L NGANISSSSRRV
Sbjct: 1   MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRV 60

Query: 61  RRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDETDNSF 120
           +RKWHSREERKIDREYDIVLVPSDGGC+SGSESDDSDWSIGWSEPHGPGFQSDD++DNSF
Sbjct: 61  KRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSF 120

Query: 121 AVLVPCYGRVYNDFVDETKNSILSAAGNINDSFSAESKKYMEQWLSSLQSC 171
           AVLVPCY R+YNDFVDETK S+LSA GNI+DSFS ESKKYMEQWLSSLQ+C
Sbjct: 121 AVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTESKKYMEQWLSSLQNC 171

[Close]
BLAST of CmaCh12G002020 vs. NCBI nr
Match: XP_023001877.1 (uncharacterized protein LOC111495931 [Cucurbita maxima] >XP_023001878.1 uncharacterized protein LOC111495931 [Cucurbita maxima] >XP_023001879.1 uncharacterized protein LOC111495931 [Cucurbita maxima] >XP_023001880.1 uncharacterized protein LOC111495931 [Cucurbita maxima] >XP_023536720.1 uncharacterized protein LOC111798013 [Cucurbita pepo subsp. pepo] >XP_023536721.1 uncharacterized protein LOC111798013 [Cucurbita pepo subsp. pepo] >XP_023536722.1 uncharacterized protein LOC111798013 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 352.8 bits (904), Expect = 1.6e-93
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0 

Query: 1   MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVR 60
           MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVR
Sbjct: 1   MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVR 60

Query: 61  RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDETDNSFA 120
           RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDETDNSFA
Sbjct: 61  RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDETDNSFA 120

Query: 121 VLVPCYGRVYNDFVDETKNSILSAAGNINDSFSAESKKYMEQWLSSLQSC 171
           VLVPCYGRVYNDFVDETKNSILSAAGNINDSFSAESKKYMEQWLSSLQSC
Sbjct: 121 VLVPCYGRVYNDFVDETKNSILSAAGNINDSFSAESKKYMEQWLSSLQSC 170

[Close]
BLAST of CmaCh12G002020 vs. NCBI nr
Match: XP_022951746.1 (uncharacterized protein LOC111454487 [Cucurbita moschata] >XP_022951747.1 uncharacterized protein LOC111454487 [Cucurbita moschata])

HSP 1 Score: 351.7 bits (901), Expect = 3.6e-93
Identity = 169/170 (99.41%), Postives = 170/170 (100.00%), Query Frame = 0 

Query: 1   MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVR 60
           MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVR
Sbjct: 1   MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVR 60

Query: 61  RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDETDNSFA 120
           RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDETDNSFA
Sbjct: 61  RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDETDNSFA 120

Query: 121 VLVPCYGRVYNDFVDETKNSILSAAGNINDSFSAESKKYMEQWLSSLQSC 171
           VLVPCYGRVYNDFVDETKNSILSA+GNINDSFSAESKKYMEQWLSSLQSC
Sbjct: 121 VLVPCYGRVYNDFVDETKNSILSASGNINDSFSAESKKYMEQWLSSLQSC 170

[Close]
BLAST of CmaCh12G002020 vs. NCBI nr
Match: KAG6585342.1 (hypothetical protein SDJN03_18075, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 349.7 bits (896), Expect = 1.4e-92
Identity = 168/170 (98.82%), Postives = 169/170 (99.41%), Query Frame = 0 

Query: 1   MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVR 60
           MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVR
Sbjct: 1   MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVR 60

Query: 61  RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDETDNSFA 120
           RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGF SDDETDNSFA
Sbjct: 61  RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFHSDDETDNSFA 120

Query: 121 VLVPCYGRVYNDFVDETKNSILSAAGNINDSFSAESKKYMEQWLSSLQSC 171
           VLVPCYGRVYNDFVDETKNSILSA+GNINDSFSAESKKYMEQWLSSLQSC
Sbjct: 121 VLVPCYGRVYNDFVDETKNSILSASGNINDSFSAESKKYMEQWLSSLQSC 170

[Close]
BLAST of CmaCh12G002020 vs. NCBI nr
Match: XP_038886443.1 (uncharacterized protein LOC120076637 [Benincasa hispida] >XP_038886444.1 uncharacterized protein LOC120076637 [Benincasa hispida] >XP_038886445.1 uncharacterized protein LOC120076637 [Benincasa hispida] >XP_038886446.1 uncharacterized protein LOC120076637 [Benincasa hispida])

HSP 1 Score: 327.4 bits (838), Expect = 7.3e-86
Identity = 158/171 (92.40%), Postives = 163/171 (95.32%), Query Frame = 0 

Query: 1   MSVAFPQLSWWSWSGKHKEPRTSN-GSAFNASLDTVIREPDTLKFPLANGANISSSSRRV 60
           MSVAFPQLSWW WSGKHKEPR+SN GSA NASLDT  RE DTLKFPL NGANISSSSRRV
Sbjct: 1   MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANISSSSRRV 60

Query: 61  RRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDETDNSF 120
           +RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDE+DNSF
Sbjct: 61  KRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDESDNSF 120

Query: 121 AVLVPCYGRVYNDFVDETKNSILSAAGNINDSFSAESKKYMEQWLSSLQSC 171
           AVLVPCYGR+YNDFVDETKNSILSA GNINDSFSAESKKYMEQWLSSLQ+C
Sbjct: 121 AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAESKKYMEQWLSSLQNC 171

[Close]
BLAST of CmaCh12G002020 vs. NCBI nr
Match: XP_004152600.1 (uncharacterized protein LOC101213956 [Cucumis sativus] >XP_031736756.1 uncharacterized protein LOC101213956 [Cucumis sativus] >XP_031736757.1 uncharacterized protein LOC101213956 [Cucumis sativus] >XP_031736758.1 uncharacterized protein LOC101213956 [Cucumis sativus] >KGN62990.2 hypothetical protein Csa_022594 [Cucumis sativus])

HSP 1 Score: 326.6 bits (836), Expect = 1.2e-85
Identity = 157/171 (91.81%), Postives = 163/171 (95.32%), Query Frame = 0 

Query: 1   MSVAFPQLSWWSWSGKHKEPRTSN-GSAFNASLDTVIREPDTLKFPLANGANISSSSRRV 60
           MSVAFPQLSWW WSGKHKEPR+SN GSA NASLDT  RE DTLKFPL NGAN+SSSSRRV
Sbjct: 1   MSVAFPQLSWWLWSGKHKEPRSSNGGSALNASLDTANRETDTLKFPLVNGANLSSSSRRV 60

Query: 61  RRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDETDNSF 120
           +RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDE+DNSF
Sbjct: 61  KRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDESDNSF 120

Query: 121 AVLVPCYGRVYNDFVDETKNSILSAAGNINDSFSAESKKYMEQWLSSLQSC 171
           AVLVPCYGR+YNDFVDETKNSILSA GNINDSFSAESKKYMEQWLSSLQ+C
Sbjct: 121 AVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAESKKYMEQWLSSLQNC 171

[Close]
BLAST of CmaCh12G002020 vs. TAIR 10
Match: AT4G38060.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 84.3 bits (207), Expect = 1.0e-16
Identity = 46/88 (52.27%), Postives = 54/88 (61.36%), Query Frame = 0 

Query: 88  SGSES------DDSDWSIGWSEPHGPGFQSDDE-TDNSFAVLVPCYGRVYNDFVDETKNS 147
           SGSES      D  +WS+GW+EPHGP FQSDDE  D  F VLVPCY R   +      N 
Sbjct: 48  SGSESVDVVAGDGPEWSVGWTEPHGPDFQSDDEGNDGGFLVLVPCY-RAVVEGSSNNNNQ 107

Query: 148 ILSAAGNINDSFSAESKKYMEQWLSSLQ 169
           +LSA  N+ +    + K YMEQWLSSLQ
Sbjct: 108 LLSAVKNLPNGLPPDGKNYMEQWLSSLQ 134

[Close]
BLAST of CmaCh12G002020 vs. TAIR 10
Match: AT5G65480.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38060.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 84.0 bits (206), Expect = 1.3e-16
Identity = 57/167 (34.13%), Postives = 78/167 (46.71%), Query Frame = 0 

Query: 1   MSVAFPQLSWWSWSGKHKEPRTSNGSAFNASLDTVIREPDTLKFPLANGANISSSSRRVR 60
           M+V+FP+L  W   G + + R    S    S       P   K   +   + SSS ++ +
Sbjct: 1   MAVSFPRLPRWLCGGSNTKDREKKESIPKGSSSL---SPSLKKTTTSKTGSSSSSVKKTK 60

Query: 61  RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQSDDETDNSFA 120
           R W  R       E D +      G V   E DD +WSIGW EPHGPGF+++D+    F 
Sbjct: 61  RGWIGRGGSGSGGEEDKI------GNVVFPEPDDPEWSIGWVEPHGPGFKAEDDDCGGFV 120

Query: 121 VLVPCYGRVYNDFVDETKNSILSAAGNINDSFSAESKKYMEQWLSSL 168
           VLVP Y +V +   ++  N   S A        A   K MEQWLSS+
Sbjct: 121 VLVPLYKKVMDGSGNQIPNGFFSPA--------APDGKNMEQWLSSM 150

[Close]
BLAST of CmaCh12G002020 vs. TAIR 10
Match: AT4G38060.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65480.1); Has 63 Blast hits to 63 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 63.5 bits (153), Expect = 1.8e-10
Identity = 35/68 (51.47%), Postives = 41/68 (60.29%), Query Frame = 0 

Query: 88  SGSES------DDSDWSIGWSEPHGPGFQSDDE-TDNSFAVLVPCYGRVYNDFVDETKNS 147
           SGSES      D  +WS+GW+EPHGP FQSDDE  D  F VLVPCY R   +      N 
Sbjct: 48  SGSESVDVVAGDGPEWSVGWTEPHGPDFQSDDEGNDGGFLVLVPCY-RAVVEGSSNNNNQ 107

Query: 148 ILSAAGNI 149
           +LSA  N+
Sbjct: 108 LLSAVKNL 114

The following BLAST results are available for this feature:
BLAST of CmaCh12G002020 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh12G002020 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1KME17.9e-94100.00uncharacterized protein LOC111495931 OS=Cucurbita maxima OX=3661 GN=LOC111495931... [more]
A0A6J1GID21.7e-9399.41uncharacterized protein LOC111454487 OS=Cucurbita moschata OX=3662 GN=LOC1114544... [more]
A0A1S3BB056.0e-8691.81uncharacterized protein LOC103488121 OS=Cucumis melo OX=3656 GN=LOC103488121 PE=... [more]
A0A6J1BVP65.1e-8590.00uncharacterized protein LOC111005141 isoform X2 OS=Momordica charantia OX=3673 G... [more]
A0A6J1K7301.4e-7986.55uncharacterized protein LOC111492231 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
BLAST of CmaCh12G002020 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023001877.11.6e-93100.00uncharacterized protein LOC111495931 [Cucurbita maxima] >XP_023001878.1 uncharac... [more]
XP_022951746.13.6e-9399.41uncharacterized protein LOC111454487 [Cucurbita moschata] >XP_022951747.1 unchar... [more]
KAG6585342.11.4e-9298.82hypothetical protein SDJN03_18075, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_038886443.17.3e-8692.40uncharacterized protein LOC120076637 [Benincasa hispida] >XP_038886444.1 unchara... [more]
XP_004152600.11.2e-8591.81uncharacterized protein LOC101213956 [Cucumis sativus] >XP_031736756.1 uncharact... [more]
BLAST of CmaCh12G002020 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G38060.21.0e-1652.27unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G65480.11.3e-1634.13unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT4G38060.11.8e-1051.47unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34464OS09G0376300 PROTEINcoord: 1..169
NoneNo IPR availablePANTHERPTHR34464:SF5SUBFAMILY NOT NAMEDcoord: 1..169

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh12G002020.1CmaCh12G002020.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032259 methylation
molecular_function GO:0008168 methyltransferase activity