CmaCh11G010940 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G010940
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	protein RADIALIS-like 1
Location	Cma_Chr11: 6052102 .. 6053179 (-)
RNA-Seq Expression	CmaCh11G010940
Synteny	CmaCh11G010940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTTATACTCTTATCATGGCTTCCATGTCTTCCCATGGCTCTGCTTCATGGACTGCAAAGCAAAACAAAGCCTTTGAGGAGGCTTTGGCACGGTATGACCGAGACATGCCTGACCGATGGCTCAATGTTGCAAGAGCTGTCGGTGGCAAAACTGAAGAGGAGGTCAAAAGGCACTACCAACTTCTTGTGGAGGATGTCAAGTTCATTGAGTCGGGCCGTGTTCCCTATCCGTATCGGAACTCGGGAGCCAGTAACTAAGGTATCATGATCACTGATGACAAAAATATGTATACAAAAGGAATCATGATAATGTCGTTACCAAAAACACTAGTTTATACACCCTGGTCAATAGTAACTCCTCGTAACTTTTAAATGGCTCAAAAGTTTTAGTAGAAGTCCGTATCTATTCATTGCAATAGAAACAGGTTAATAAAAGTACATAAAACCAAAATATCCTACTCATTAGGTTCTCCTCATTCCTATCTAAGTTTTGTTCCTAAAAAATAACTTTCGTATTGTTATTTTAATGATGTAGAATGTTTACATCATCATATCATCTTTGTAATTTATTTTCTCTCGATCAATATCTGATCATAATCTATAATAGTAATGTAGCTAAACGTATCGATATCATACGTTCGTCCATGTTTATACAAAATAGTTGGTTAATTGGGTTCAAGAAACCCTAGCCACACCATTGGCTTGTAAATGATCCCTTAGCTAGCTTGAAACGGATGTCACTATACAGTTTGTAAGTATATGAGCAGAGGAATGTCATTATCGATGAATAGAGGCCCCACACTGGATTCTTGTGTCAATGAATGGCTATATGTAAGCTTTTTGAAAGCCACCCTTCTTGTTCTTCCAAACTAAAGCTGCACCAATGTCTCAGCATTGGCTCTCACACCCCAACAAGAACAAGAATAATATTATATTATTGTTCATGTTGGATTTTAACCCAATGTTTTTTATTTTATTTTATTATTATTATTATGATTATTATTTTATTTCAGGATGAGAAACAAGAGCTCCATTGATCATGATCGTGAAGTAATAGAAGAATAAAAGGATTGGAG

mRNA sequence

ATTTTTATACTCTTATCATGGCTTCCATGTCTTCCCATGGCTCTGCTTCATGGACTGCAAAGCAAAACAAAGCCTTTGAGGAGGCTTTGGCACGGTATGACCGAGACATGCCTGACCGATGGCTCAATGTTGCAAGAGCTGTCGGTGGCAAAACTGAAGAGGAGGTCAAAAGGCACTACCAACTTCTTGTGGAGGATGTCAAGTTCATTGAGTCGGGCCGTGTTCCCTATCCGTATCGGAACTCGGGAGCCAGTAACTAAGATGAGAAACAAGAGCTCCATTGATCATGATCGTGAAGTAATAGAAGAATAAAAGGATTGGAG

Coding sequence (CDS)

ATGGCTTCCATGTCTTCCCATGGCTCTGCTTCATGGACTGCAAAGCAAAACAAAGCCTTTGAGGAGGCTTTGGCACGGTATGACCGAGACATGCCTGACCGATGGCTCAATGTTGCAAGAGCTGTCGGTGGCAAAACTGAAGAGGAGGTCAAAAGGCACTACCAACTTCTTGTGGAGGATGTCAAGTTCATTGAGTCGGGCCGTGTTCCCTATCCGTATCGGAACTCGGGAGCCAGTAACTAA

Protein sequence

MASMSSHGSASWTAKQNKAFEEALARYDRDMPDRWLNVARAVGGKTEEEVKRHYQLLVEDVKFIESGRVPYPYRNSGASN

Homology

[Close]

BLAST of CmaCh11G010940 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.0e-24
Identity = 54/77 (70.13%), Postives = 64/77 (83.12%), Query Frame = 0


Query: 2  ASMSSHGSASWTAKQNKAFEEALARYDRDMPDRWLNVARAVGGKTEEEVKRHYQLLVEDV 61
          +SMSS  S SWTAKQNKAFE+ALA YD+D P+RW NVA+ VGGKT EEVKRHY+LLV+D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KFIESGRVPYP-YRNSG 78
            IE+G VP+P YR SG
Sbjct: 64 NSIENGHVPFPNYRTSG 80

[Close]

BLAST of CmaCh11G010940 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 5.6e-23
Identity = 51/70 (72.86%), Postives = 57/70 (81.43%), Query Frame = 0


Query: 3  SMSSHGSASWTAKQNKAFEEALARYDRDMPDRWLNVARAVGGKTEEEVKRHYQLLVEDVK 62
          SMSS+GS SWT KQNKAFE ALA YD+D PDRW NVARAVGGKT EE KR Y LLV D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 FIESGRVPYP 73
           IE+G VP+P
Sbjct: 65 SIENGHVPFP 74

[Close]

BLAST of CmaCh11G010940 vs. ExPASy Swiss-Prot
Match: Q6NNN0 (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 5.6e-23
Identity = 53/78 (67.95%), Postives = 62/78 (79.49%), Query Frame = 0


Query: 1  MASMSSHGSASWTAKQNKAFEEALARYDRDMPDRWLNVARAVGGKTEEEVKRHYQLLVED 60
          MAS S   SASWT K+NK FE ALA YD+D PDRW NVARAVGGK+ EEV+RHY+LL+ D
Sbjct: 1  MASNSMSSSASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIRD 60

Query: 61 VKFIESGRVPYP-YRNSG 78
          V  IESGR P+P YR++G
Sbjct: 61 VNDIESGRYPHPNYRSNG 78

[Close]

BLAST of CmaCh11G010940 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.1e-22
Identity = 51/80 (63.75%), Postives = 64/80 (80.00%), Query Frame = 0


Query: 1  MASMSSHGSASWTAKQNKAFEEALARYDRDMPDRWLNVARAVGGKTEEEVKRHYQLLVED 60
          MAS    G   W+AK+NKAFE ALA YD+D PDRW NVARAV G+T EEVK+HY++LVED
Sbjct: 1  MASTRGSG-RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVED 60

Query: 61 VKFIESGRVPYP-YRNSGAS 80
          +K+IESG+VP+P YR +G +
Sbjct: 61 IKYIESGKVPFPNYRTTGGN 79

[Close]

BLAST of CmaCh11G010940 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 4.4e-20
Identity = 50/80 (62.50%), Postives = 57/80 (71.25%), Query Frame = 0


Query: 1  MASMSSHGSASWTAKQNKAFEEALARYDRDMPDRWLNVARAVGGKTEEEVKRHYQLLVED 60
          MAS S    + WT  QNK FE ALA YD+D PDRW NVA+AVGGKT EEVKRHY +LVED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKFIESGRVPYPYRNSGASN 81
          +  IE+GRVP P   +  SN
Sbjct: 61 LINIETGRVPLPNYKTFESN 80

[Close]

BLAST of CmaCh11G010940 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 113.6 bits (283), Expect = 7.3e-26
Identity = 54/77 (70.13%), Postives = 64/77 (83.12%), Query Frame = 0


Query: 2  ASMSSHGSASWTAKQNKAFEEALARYDRDMPDRWLNVARAVGGKTEEEVKRHYQLLVEDV 61
          +SMSS  S SWTAKQNKAFE+ALA YD+D P+RW NVA+ VGGKT EEVKRHY+LLV+D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KFIESGRVPYP-YRNSG 78
            IE+G VP+P YR SG
Sbjct: 64 NSIENGHVPFPNYRTSG 80

[Close]

BLAST of CmaCh11G010940 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 107.8 bits (268), Expect = 4.0e-24
Identity = 51/70 (72.86%), Postives = 57/70 (81.43%), Query Frame = 0


Query: 3  SMSSHGSASWTAKQNKAFEEALARYDRDMPDRWLNVARAVGGKTEEEVKRHYQLLVEDVK 62
          SMSS+GS SWT KQNKAFE ALA YD+D PDRW NVARAVGGKT EE KR Y LLV D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 FIESGRVPYP 73
           IE+G VP+P
Sbjct: 65 SIENGHVPFP 74

[Close]

BLAST of CmaCh11G010940 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 98.2 bits (243), Expect = 3.2e-21
Identity = 50/80 (62.50%), Postives = 57/80 (71.25%), Query Frame = 0


Query: 1  MASMSSHGSASWTAKQNKAFEEALARYDRDMPDRWLNVARAVGGKTEEEVKRHYQLLVED 60
          MAS S    + WT  QNK FE ALA YD+D PDRW NVA+AVGGKT EEVKRHY +LVED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKFIESGRVPYPYRNSGASN 81
          +  IE+GRVP P   +  SN
Sbjct: 61 LINIETGRVPLPNYKTFESN 80

[Close]

BLAST of CmaCh11G010940 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 98.2 bits (243), Expect = 3.2e-21
Identity = 50/80 (62.50%), Postives = 57/80 (71.25%), Query Frame = 0


Query: 1  MASMSSHGSASWTAKQNKAFEEALARYDRDMPDRWLNVARAVGGKTEEEVKRHYQLLVED 60
          MAS S    + WT  QNK FE ALA YD+D PDRW NVA+AVGGKT EEVKRHY +LVED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKFIESGRVPYPYRNSGASN 81
          +  IE+GRVP P   +  SN
Sbjct: 61 LINIETGRVPLPNYKTFESN 80

[Close]

BLAST of CmaCh11G010940 vs. TAIR 10
Match: AT2G18328.1 (RAD-like 4 )

HSP 1 Score: 97.8 bits (242), Expect = 4.1e-21
Identity = 49/77 (63.64%), Postives = 62/77 (80.52%), Query Frame = 0


Query: 1  MASMSSHGSASWTAKQNKAFEEALARYDRDMPDRWLNVARAVGGKTEEEVKRHYQLLVED 60
          MAS SS  ++SWTA+++K FE ALA++D+D PDRW  +ARAVGGK+ EEVKRHY+LL+ D
Sbjct: 1  MAS-SSMSTSSWTAREDKQFEMALAKFDKDTPDRWQKIARAVGGKSTEEVKRHYELLLRD 60

Query: 61 VKFIESGRVPYP-YRNS 77
          V  IESGR P P YRN+
Sbjct: 61 VNDIESGRYPQPRYRNT 76

The following BLAST results are available for this feature:

BLAST of CmaCh11G010940 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JVB8	1.0e-24	70.13	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q9SIJ5	5.6e-23	72.86	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]
Q6NNN0	5.6e-23	67.95	Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1	[more]
Q58FS3	2.1e-22	63.75	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]
Q1A173	4.4e-20	62.50	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]

BLAST of CmaCh11G010940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39250.1	7.3e-26	70.13	RAD-like 1	[more]
AT2G21650.1	4.0e-24	72.86	Homeodomain-like superfamily protein	[more]
AT1G75250.1	3.2e-21	62.50	RAD-like 6	[more]
AT1G75250.2	3.2e-21	62.50	RAD-like 6	[more]
AT2G18328.1	4.1e-21	63.64	RAD-like 4	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 8..60 e-value: 7.0E-6 score: 35.5
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 4..58 score: 6.365003
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 11..58 e-value: 6.14887E-7 score: 39.8662
None	No IPR available	GENE3D	1.10.10.60		coord: 3..71 e-value: 6.3E-23 score: 82.3
None	No IPR available	PANTHER	PTHR43952:SF68	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 2..75
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 11..56 e-value: 2.4E-6 score: 27.6
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 2..75
IPR017884	SANT domain	PROSITE	PS51293	SANT	coord: 7..62 score: 9.905594
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 11..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G010940.1	CmaCh11G010940.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity