CmaCh06G002860 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G002860
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr06: 1384672 .. 1385393 (+)
RNA-Seq Expression	CmaCh06G002860
Synteny	CmaCh06G002860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTAGTTATAAAATGTATTAACTTTCCAAAAAAATGACACCATAAAATCCAGATGGTGGGCCATCCTTATCCACACAAAACATCAGAGCCTGAAGTCGGACAAAGCCTTATCCATATTTGATCTCCAAAACATCTCTTTATCCATATTCAATCCCATTCTGACCATCAAAATATAAGCGCAAAACCTCGATCCATTCAAACGCTACCTTCGATCATGGCGTCCTTGTGTTCATTTCCACGCATTTCTTCTGCAGATCCCATCAAGCATCCCGCCGCCGCCCCTTTTCCGCCGTCCAATCACCCGAAAAGACCATCAGCGTTGTCTCTCCGGCAGAGCAGCCGCAACCAGAAAAGAACTTCTACGATTGTCGCCGCCATCGGAGACGTCTCCGCTGACGGCACCACGTATTTGATCGCCGGCGCCGTCGCTGTGGCTCTCGTTGGTACCGCCTTCCCTATCCTCTTCTCTCGCAAAGACCTGTAAGCAAAATCTCAATTTCTCCTATAAACCATTTGTTCATATTGAAATCATTTTAAAAATGCCGTTTAGTACCGCTGTTTGAATGGTCTGGTCCTCCGTAGGTGCCCGGTGTGCGACGGCGCAGGGTTTGTCCGGAAGTCGGGGGCGGCGCTGAGGGCGAATGCGGCTCGTAAAGACCAAGCTCAGATCGTTTGTTCTCGTTGCAATGGCCTGGGCAAGCTCAATCAAGTGGACAAATAA

mRNA sequence

ATTTAGTTATAAAATGTATTAACTTTCCAAAAAAATGACACCATAAAATCCAGATGGTGGGCCATCCTTATCCACACAAAACATCAGAGCCTGAAGTCGGACAAAGCCTTATCCATATTTGATCTCCAAAACATCTCTTTATCCATATTCAATCCCATTCTGACCATCAAAATATAAGCGCAAAACCTCGATCCATTCAAACGCTACCTTCGATCATGGCGTCCTTGTGTTCATTTCCACGCATTTCTTCTGCAGATCCCATCAAGCATCCCGCCGCCGCCCCTTTTCCGCCGTCCAATCACCCGAAAAGACCATCAGCGTTGTCTCTCCGGCAGAGCAGCCGCAACCAGAAAAGAACTTCTACGATTGTCGCCGCCATCGGAGACGTCTCCGCTGACGGCACCACGTATTTGATCGCCGGCGCCGTCGCTGTGGCTCTCGTTGGTACCGCCTTCCCTATCCTCTTCTCTCGCAAAGACCTGTGCCCGGTGTGCGACGGCGCAGGGTTTGTCCGGAAGTCGGGGGCGGCGCTGAGGGCGAATGCGGCTCGTAAAGACCAAGCTCAGATCGTTTGTTCTCGTTGCAATGGCCTGGGCAAGCTCAATCAAGTGGACAAATAA

Coding sequence (CDS)

ATGGCGTCCTTGTGTTCATTTCCACGCATTTCTTCTGCAGATCCCATCAAGCATCCCGCCGCCGCCCCTTTTCCGCCGTCCAATCACCCGAAAAGACCATCAGCGTTGTCTCTCCGGCAGAGCAGCCGCAACCAGAAAAGAACTTCTACGATTGTCGCCGCCATCGGAGACGTCTCCGCTGACGGCACCACGTATTTGATCGCCGGCGCCGTCGCTGTGGCTCTCGTTGGTACCGCCTTCCCTATCCTCTTCTCTCGCAAAGACCTGTGCCCGGTGTGCGACGGCGCAGGGTTTGTCCGGAAGTCGGGGGCGGCGCTGAGGGCGAATGCGGCTCGTAAAGACCAAGCTCAGATCGTTTGTTCTCGTTGCAATGGCCTGGGCAAGCTCAATCAAGTGGACAAATAA

Protein sequence

MASLCSFPRISSADPIKHPAAAPFPPSNHPKRPSALSLRQSSRNQKRTSTIVAAIGDVSADGTTYLIAGAVAVALVGTAFPILFSRKDLCPVCDGAGFVRKSGAALRANAARKDQAQIVCSRCNGLGKLNQVDK

Homology

[Close]

BLAST of CmaCh06G002860 vs. ExPASy TrEMBL
Match: A0A6J1I3R1 (uncharacterized protein LOC111470276 OS=Cucurbita maxima OX=3661 GN=LOC111470276 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 1.6e-65
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MASLCSFPRISSADPIKHPAAAPFPPSNHPKRPSALSLRQSSRNQKRTSTIVAAIGDVSA 60
           MASLCSFPRISSADPIKHPAAAPFPPSNHPKRPSALSLRQSSRNQKRTSTIVAAIGDVSA
Sbjct: 1   MASLCSFPRISSADPIKHPAAAPFPPSNHPKRPSALSLRQSSRNQKRTSTIVAAIGDVSA 60

Query: 61  DGTTYLIAGAVAVALVGTAFPILFSRKDLCPVCDGAGFVRKSGAALRANAARKDQAQIVC 120
           DGTTYLIAGAVAVALVGTAFPILFSRKDLCPVCDGAGFVRKSGAALRANAARKDQAQIVC
Sbjct: 61  DGTTYLIAGAVAVALVGTAFPILFSRKDLCPVCDGAGFVRKSGAALRANAARKDQAQIVC 120

Query: 121 SRCNGLGKLNQVDK 135
           SRCNGLGKLNQVDK
Sbjct: 121 SRCNGLGKLNQVDK 134

[Close]

BLAST of CmaCh06G002860 vs. ExPASy TrEMBL
Match: A0A6J1HBY8 (uncharacterized protein LOC111461414 OS=Cucurbita moschata OX=3662 GN=LOC111461414 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 1.9e-63
Identity = 132/134 (98.51%), Postives = 132/134 (98.51%), Query Frame = 0


Query: 1   MASLCSFPRISSADPIKHPAAAPFPPSNHPKRPSALSLRQSSRNQKRTSTIVAAIGDVSA 60
           MASLCSFPRISSADPIKH AAAPFPPSNHP RPSALSLRQSSRNQKRTSTIVAAIGDVSA
Sbjct: 1   MASLCSFPRISSADPIKHLAAAPFPPSNHPIRPSALSLRQSSRNQKRTSTIVAAIGDVSA 60

Query: 61  DGTTYLIAGAVAVALVGTAFPILFSRKDLCPVCDGAGFVRKSGAALRANAARKDQAQIVC 120
           DGTTYLIAGAVAVALVGTAFPILFSRKDLCPVCDGAGFVRKSGAALRANAARKDQAQIVC
Sbjct: 61  DGTTYLIAGAVAVALVGTAFPILFSRKDLCPVCDGAGFVRKSGAALRANAARKDQAQIVC 120

Query: 121 SRCNGLGKLNQVDK 135
           SRCNGLGKLNQVDK
Sbjct: 121 SRCNGLGKLNQVDK 134

[Close]

BLAST of CmaCh06G002860 vs. ExPASy TrEMBL
Match: A0A6J1F9E5 (uncharacterized protein LOC111442008 OS=Cucurbita moschata OX=3662 GN=LOC111442008 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 2.5e-55
Identity = 118/135 (87.41%), Postives = 124/135 (91.85%), Query Frame = 0


Query: 1   MASLCSFPRISSADPIKH-PAAAPFPPSNHPKRPSALSLRQSSRNQKRTSTIVAAIGDVS 60
           MASLC+FPRISS +PIK  PAAAPFPPSN P RPSALSLRQSS   +R ST+VAAIGDVS
Sbjct: 1   MASLCTFPRISSTEPIKQTPAAAPFPPSNQPMRPSALSLRQSSSKHRRISTVVAAIGDVS 60

Query: 61  ADGTTYLIAGAVAVALVGTAFPILFSRKDLCPVCDGAGFVRKSGAALRANAARKDQAQIV 120
           ADGTTYLIAGAVAVALVGTAFPILFSRKDLCP CDGAGFVR+SGAALRANAARKDQ QIV
Sbjct: 61  ADGTTYLIAGAVAVALVGTAFPILFSRKDLCPECDGAGFVRRSGAALRANAARKDQTQIV 120

Query: 121 CSRCNGLGKLNQVDK 135
           C+RCNGLGKLNQVDK
Sbjct: 121 CARCNGLGKLNQVDK 135

[Close]

BLAST of CmaCh06G002860 vs. ExPASy TrEMBL
Match: A0A1S3B5E7 (uncharacterized protein LOC103486375 OS=Cucumis melo OX=3656 GN=LOC103486375 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 2.5e-55
Identity = 115/135 (85.19%), Postives = 124/135 (91.85%), Query Frame = 0


Query: 1   MASLCSFPRISSADPIKH-PAAAPFPPSNHPKRPSALSLRQSSRNQKRTSTIVAAIGDVS 60
           MASLCSFPRISS +PIK  PA APFPPSNHP RPS LSLRQSSRN KR ST+VAA+GDVS
Sbjct: 1   MASLCSFPRISSTEPIKQSPATAPFPPSNHPIRPSTLSLRQSSRNHKRISTVVAAVGDVS 60

Query: 61  ADGTTYLIAGAVAVALVGTAFPILFSRKDLCPVCDGAGFVRKSGAALRANAARKDQAQIV 120
           +DGTTYLIAGA+AVALVGTAFPI FSRKDLCP C+GAGFVR+SG+ALRANAARKDQ QIV
Sbjct: 61  SDGTTYLIAGAIAVALVGTAFPIFFSRKDLCPECEGAGFVRRSGSALRANAARKDQTQIV 120

Query: 121 CSRCNGLGKLNQVDK 135
           C+RCNGLGKLNQVDK
Sbjct: 121 CARCNGLGKLNQVDK 135

[Close]

BLAST of CmaCh06G002860 vs. ExPASy TrEMBL
Match: A0A6J1J3Y5 (uncharacterized protein LOC111482446 OS=Cucurbita maxima OX=3661 GN=LOC111482446 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 3.3e-55
Identity = 118/135 (87.41%), Postives = 124/135 (91.85%), Query Frame = 0


Query: 1   MASLCSFPRISSADPIKH-PAAAPFPPSNHPKRPSALSLRQSSRNQKRTSTIVAAIGDVS 60
           MASLC+FPRISS +PIK  PAAAPFPPSN P RPSALSLRQSS    RTST+VAA+GDVS
Sbjct: 1   MASLCTFPRISSTEPIKQTPAAAPFPPSNQPMRPSALSLRQSSGKHWRTSTVVAAVGDVS 60

Query: 61  ADGTTYLIAGAVAVALVGTAFPILFSRKDLCPVCDGAGFVRKSGAALRANAARKDQAQIV 120
           ADGTTYLIAGAVAVALVGTAFPILFSRKDLCP CDGAGFVR+SGAALRANAARKDQ QIV
Sbjct: 61  ADGTTYLIAGAVAVALVGTAFPILFSRKDLCPECDGAGFVRRSGAALRANAARKDQTQIV 120

Query: 121 CSRCNGLGKLNQVDK 135
           C+RCNGLGKLNQVDK
Sbjct: 121 CARCNGLGKLNQVDK 135

[Close]

BLAST of CmaCh06G002860 vs. NCBI nr
Match: XP_022971601.1 (uncharacterized protein LOC111470276 [Cucurbita maxima])

HSP 1 Score: 258.5 bits (659), Expect = 3.3e-65
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MASLCSFPRISSADPIKHPAAAPFPPSNHPKRPSALSLRQSSRNQKRTSTIVAAIGDVSA 60
           MASLCSFPRISSADPIKHPAAAPFPPSNHPKRPSALSLRQSSRNQKRTSTIVAAIGDVSA
Sbjct: 1   MASLCSFPRISSADPIKHPAAAPFPPSNHPKRPSALSLRQSSRNQKRTSTIVAAIGDVSA 60

Query: 61  DGTTYLIAGAVAVALVGTAFPILFSRKDLCPVCDGAGFVRKSGAALRANAARKDQAQIVC 120
           DGTTYLIAGAVAVALVGTAFPILFSRKDLCPVCDGAGFVRKSGAALRANAARKDQAQIVC
Sbjct: 61  DGTTYLIAGAVAVALVGTAFPILFSRKDLCPVCDGAGFVRKSGAALRANAARKDQAQIVC 120

Query: 121 SRCNGLGKLNQVDK 135
           SRCNGLGKLNQVDK
Sbjct: 121 SRCNGLGKLNQVDK 134

[Close]

BLAST of CmaCh06G002860 vs. NCBI nr
Match: XP_022960729.1 (uncharacterized protein LOC111461414 [Cucurbita moschata])

HSP 1 Score: 251.5 bits (641), Expect = 4.0e-63
Identity = 132/134 (98.51%), Postives = 132/134 (98.51%), Query Frame = 0


Query: 1   MASLCSFPRISSADPIKHPAAAPFPPSNHPKRPSALSLRQSSRNQKRTSTIVAAIGDVSA 60
           MASLCSFPRISSADPIKH AAAPFPPSNHP RPSALSLRQSSRNQKRTSTIVAAIGDVSA
Sbjct: 1   MASLCSFPRISSADPIKHLAAAPFPPSNHPIRPSALSLRQSSRNQKRTSTIVAAIGDVSA 60

Query: 61  DGTTYLIAGAVAVALVGTAFPILFSRKDLCPVCDGAGFVRKSGAALRANAARKDQAQIVC 120
           DGTTYLIAGAVAVALVGTAFPILFSRKDLCPVCDGAGFVRKSGAALRANAARKDQAQIVC
Sbjct: 61  DGTTYLIAGAVAVALVGTAFPILFSRKDLCPVCDGAGFVRKSGAALRANAARKDQAQIVC 120

Query: 121 SRCNGLGKLNQVDK 135
           SRCNGLGKLNQVDK
Sbjct: 121 SRCNGLGKLNQVDK 134

[Close]

BLAST of CmaCh06G002860 vs. NCBI nr
Match: XP_023539540.1 (uncharacterized protein LOC111800182 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 248.4 bits (633), Expect = 3.4e-62
Identity = 131/134 (97.76%), Postives = 131/134 (97.76%), Query Frame = 0


Query: 1   MASLCSFPRISSADPIKHPAAAPFPPSNHPKRPSALSLRQSSRNQKRTSTIVAAIGDVSA 60
           MASLCSFPRISSADPIKH AAAPFPPSN P RPSALSLRQSSRNQKRTSTIVAAIGDVSA
Sbjct: 1   MASLCSFPRISSADPIKHLAAAPFPPSNRPIRPSALSLRQSSRNQKRTSTIVAAIGDVSA 60

Query: 61  DGTTYLIAGAVAVALVGTAFPILFSRKDLCPVCDGAGFVRKSGAALRANAARKDQAQIVC 120
           DGTTYLIAGAVAVALVGTAFPILFSRKDLCPVCDGAGFVRKSGAALRANAARKDQAQIVC
Sbjct: 61  DGTTYLIAGAVAVALVGTAFPILFSRKDLCPVCDGAGFVRKSGAALRANAARKDQAQIVC 120

Query: 121 SRCNGLGKLNQVDK 135
           SRCNGLGKLNQVDK
Sbjct: 121 SRCNGLGKLNQVDK 134

[Close]

BLAST of CmaCh06G002860 vs. NCBI nr
Match: KAG6596401.1 (Aspartic proteinase PCS1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 247.3 bits (630), Expect = 7.6e-62
Identity = 130/132 (98.48%), Postives = 130/132 (98.48%), Query Frame = 0


Query: 1   MASLCSFPRISSADPIKHPAAAPFPPSNHPKRPSALSLRQSSRNQKRTSTIVAAIGDVSA 60
           MASLCSFPRISSADPIKH AAAPFPPSNHP RPSALSLRQSSRNQKRTSTIVAAIGDVSA
Sbjct: 1   MASLCSFPRISSADPIKHLAAAPFPPSNHPIRPSALSLRQSSRNQKRTSTIVAAIGDVSA 60

Query: 61  DGTTYLIAGAVAVALVGTAFPILFSRKDLCPVCDGAGFVRKSGAALRANAARKDQAQIVC 120
           DGTTYLIAGAVAVALVGTAFPILFSRKDLCPVCDGAGFVRKSGAALRANAARKDQAQIVC
Sbjct: 61  DGTTYLIAGAVAVALVGTAFPILFSRKDLCPVCDGAGFVRKSGAALRANAARKDQAQIVC 120

Query: 121 SRCNGLGKLNQV 133
           SRCNGLGKLNQV
Sbjct: 121 SRCNGLGKLNQV 132

[Close]

BLAST of CmaCh06G002860 vs. NCBI nr
Match: KAG7027943.1 (Aspartic proteinase PCS1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 244.2 bits (622), Expect = 6.4e-61
Identity = 129/132 (97.73%), Postives = 129/132 (97.73%), Query Frame = 0


Query: 1   MASLCSFPRISSADPIKHPAAAPFPPSNHPKRPSALSLRQSSRNQKRTSTIVAAIGDVSA 60
           MASLCSFPRISSADPIKH AAAPFPPSN P RPSALSLRQSSRNQKRTSTIVAAIGDVSA
Sbjct: 1   MASLCSFPRISSADPIKHLAAAPFPPSNRPIRPSALSLRQSSRNQKRTSTIVAAIGDVSA 60

Query: 61  DGTTYLIAGAVAVALVGTAFPILFSRKDLCPVCDGAGFVRKSGAALRANAARKDQAQIVC 120
           DGTTYLIAGAVAVALVGTAFPILFSRKDLCPVCDGAGFVRKSGAALRANAARKDQAQIVC
Sbjct: 61  DGTTYLIAGAVAVALVGTAFPILFSRKDLCPVCDGAGFVRKSGAALRANAARKDQAQIVC 120

Query: 121 SRCNGLGKLNQV 133
           SRCNGLGKLNQV
Sbjct: 121 SRCNGLGKLNQV 132

[Close]

BLAST of CmaCh06G002860 vs. TAIR 10
Match: AT5G02160.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 121 Blast hits to 121 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 121; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 140.2 bits (352), Expect = 1.2e-33
Identity = 75/125 (60.00%), Postives = 89/125 (71.20%), Query Frame = 0


Query: 10  ISSADPIKHPAAAPFPPSNHPKRPSALSLRQSSRNQKRTSTIVAAIGDVSADGTTYLIAG 69
           +SS + +KH ++   P  N+   P           +  +S +VAA+GDVS+DGT YLI G
Sbjct: 12  VSSTNFLKHSSSWGSPSPNNVILP--------KNKRSSSSVVVAAVGDVSSDGTIYLIGG 71

Query: 70  AVAVALVGTAFPILFSRKDLCPVCDGAGFVRKSGAALRANAARKDQAQIVCSRCNGLGKL 129
           A+AVALVGTAFPILF RKD CP CDGAGFVRK G  LRANAARKD  QIVC+ CNGLGKL
Sbjct: 72  AIAVALVGTAFPILFKRKDTCPECDGAGFVRKGGVTLRANAARKDLPQIVCANCNGLGKL 128

Query: 130 NQVDK 135
           NQ+DK
Sbjct: 132 NQIDK 128

The following BLAST results are available for this feature:

BLAST of CmaCh06G002860 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh06G002860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I3R1	1.6e-65	100.00	uncharacterized protein LOC111470276 OS=Cucurbita maxima OX=3661 GN=LOC111470276...	[more]
A0A6J1HBY8	1.9e-63	98.51	uncharacterized protein LOC111461414 OS=Cucurbita moschata OX=3662 GN=LOC1114614...	[more]
A0A6J1F9E5	2.5e-55	87.41	uncharacterized protein LOC111442008 OS=Cucurbita moschata OX=3662 GN=LOC1114420...	[more]
A0A1S3B5E7	2.5e-55	85.19	uncharacterized protein LOC103486375 OS=Cucumis melo OX=3656 GN=LOC103486375 PE=...	[more]
A0A6J1J3Y5	3.3e-55	87.41	uncharacterized protein LOC111482446 OS=Cucurbita maxima OX=3661 GN=LOC111482446...	[more]

BLAST of CmaCh06G002860 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022971601.1	3.3e-65	100.00	uncharacterized protein LOC111470276 [Cucurbita maxima]	[more]
XP_022960729.1	4.0e-63	98.51	uncharacterized protein LOC111461414 [Cucurbita moschata]	[more]
XP_023539540.1	3.4e-62	97.76	uncharacterized protein LOC111800182 [Cucurbita pepo subsp. pepo]	[more]
KAG6596401.1	7.6e-62	98.48	Aspartic proteinase PCS1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7027943.1	6.4e-61	97.73	Aspartic proteinase PCS1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of CmaCh06G002860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02160.1	1.2e-33	60.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..46
None	No IPR available	PANTHER	PTHR36389	OS05G0110100 PROTEIN	coord: 1..134
IPR036410	Heat shock protein DnaJ, cysteine-rich domain superfamily	SUPERFAMILY	57938	DnaJ/Hsp40 cysteine-rich domain	coord: 82..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G002860.1	CmaCh06G002860.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane