Bhi04G000871 (gene) Wax gourd (B227) v1

Overview
NameBhi04G000871
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionRING-type domain-containing protein
Locationchr4: 26814664 .. 26814841 (-)
RNA-Seq ExpressionBhi04G000871
SyntenyBhi04G000871
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GCATTTCGACTTGTTCTTTTCGCTGCGGAGGAGAGTACTCACATGGAGATGAAGTCGGGACGCTGCAGTGCGAGCATACTTACCATGAAGGGTGCATAAACAATGGCTGCGGCTGAAGAACTGGTGCCCCATATGCAAAGCATCTGTGGAGGAACCTGCTTCGGCTTTGCCTTCATAA

mRNA sequence

GCATTTCGACTTGTTCTTTTCGCTGCGGAGGAGAGTACTCACATGGAGATGAAGTCGGGACGCTGCAGGTGCATAAACAATGGCTGCGGCTGAAGAACTGGTGCCCCATATGCAAAGCATCTGTGGAGGAACCTGCTTCGGCTTTGCCTTCATAA

Coding sequence (CDS)

GCATTTCGACTTGTTCTTTTCGCTGCGGAGGAGAGTACTCACATGGAGATGAAGTCGGGACGCTGCAGGTGCATAAACAATGGCTGCGGCTGAAGAACTGGTGCCCCATATGCAAAGCATCTGTGGAGGAACCTGCTTCGGCTTTGCCTTCATAA

Protein sequence

ISTCSFRCGGEYSHGDEVGTLQVHKQWLRLKNWCPICKASVEEPASALPS
Homology
BLAST of Bhi04G000871 vs. TAIR 10
Match: AT5G10650.1 (RING/U-box superfamily protein )

HSP 1 Score: 55.1 bits (131), Expect = 1.9e-08
Identity = 26/51 (50.98%), Postives = 30/51 (58.82%), Query Frame = 0

Query: 4   CSFRCGGEYSHGDEVGTLQVH--------KQWLRLKNWCPICKASVEEPAS 47
           CS  C  EY  GDE+GT+           +QWLR+KNWCPICK S EE  S
Sbjct: 475 CSI-CQEEYVDGDELGTIPCQHMYHVSCVQQWLRMKNWCPICKTSAEEEKS 524

BLAST of Bhi04G000871 vs. TAIR 10
Match: AT5G10650.2 (RING/U-box superfamily protein )

HSP 1 Score: 55.1 bits (131), Expect = 1.9e-08
Identity = 26/51 (50.98%), Postives = 30/51 (58.82%), Query Frame = 0

Query: 4   CSFRCGGEYSHGDEVGTLQVH--------KQWLRLKNWCPICKASVEEPAS 47
           CS  C  EY  GDE+GT+           +QWLR+KNWCPICK S EE  S
Sbjct: 475 CSI-CQEEYVDGDELGTIPCQHMYHVSCVQQWLRMKNWCPICKTSAEEEKS 524

BLAST of Bhi04G000871 vs. TAIR 10
Match: AT5G24870.1 (RING/U-box superfamily protein )

HSP 1 Score: 54.3 bits (129), Expect = 3.3e-08
Identity = 28/47 (59.57%), Postives = 29/47 (61.70%), Query Frame = 0

Query: 4   CSFRCGGEYSHGDEVGTLQV-HK-------QWLRLKNWCPICKASVE 43
           CS  C  EY  GDEVGTL   HK       QWLR+KNWCPICK S E
Sbjct: 468 CSI-CQEEYVDGDEVGTLPCQHKYHVSCAQQWLRMKNWCPICKTSAE 513

BLAST of Bhi04G000871 vs. TAIR 10
Match: AT5G24870.2 (RING/U-box superfamily protein )

HSP 1 Score: 54.3 bits (129), Expect = 3.3e-08
Identity = 28/47 (59.57%), Postives = 29/47 (61.70%), Query Frame = 0

Query: 4   CSFRCGGEYSHGDEVGTLQV-HK-------QWLRLKNWCPICKASVE 43
           CS  C  EY  GDEVGTL   HK       QWLR+KNWCPICK S E
Sbjct: 468 CSI-CQEEYVDGDEVGTLPCQHKYHVSCAQQWLRMKNWCPICKTSAE 513

BLAST of Bhi04G000871 vs. TAIR 10
Match: AT4G31450.1 (RING/U-box superfamily protein )

HSP 1 Score: 49.7 bits (117), Expect = 8.0e-07
Identity = 23/47 (48.94%), Postives = 29/47 (61.70%), Query Frame = 0

Query: 4   CSFRCGGEYSHGDEVGTLQVH--------KQWLRLKNWCPICKASVE 43
           CS  C  EY+ GDEVG L           ++WLR+K+WCPICKA+ E
Sbjct: 448 CSI-CQEEYTIGDEVGRLHCEHTYHVKCVQEWLRIKSWCPICKATAE 493

BLAST of Bhi04G000871 vs. ExPASy Swiss-Prot
Match: O49500 (E3 ubiquitin-protein ligase MBR2 OS=Arabidopsis thaliana OX=3702 GN=MBR2 PE=1 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 4.8e-04
Identity = 21/39 (53.85%), Postives = 25/39 (64.10%), Query Frame = 0

Query: 8   CGGEYSHGDEVGTL----QVH----KQWLRLKNWCPICK 39
           C  EY+ GD++GTL    + H    KQWL LKN CPICK
Sbjct: 622 CQEEYAEGDDLGTLGCGHEFHTACVKQWLMLKNLCPICK 660

BLAST of Bhi04G000871 vs. ExPASy TrEMBL
Match: A0A6J1BRY9 (dentin sialophosphoprotein-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111004854 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.4e-11
Identity = 37/51 (72.55%), Postives = 39/51 (76.47%), Query Frame = 0

Query: 8   CGGEYSHGDEVGTLQVH--------KQWLRLKNWCPICKASVEEPASALPS 51
           C  EYS+GDEVGTLQ          +QWLRLKNWCPICKASVEEPASALPS
Sbjct: 500 CQEEYSNGDEVGTLQCEHTYHEGCIQQWLRLKNWCPICKASVEEPASALPS 550

BLAST of Bhi04G000871 vs. ExPASy TrEMBL
Match: A0A6J1BR85 (probable E3 ubiquitin-protein ligase RHG1A isoform X3 OS=Momordica charantia OX=3673 GN=LOC111004854 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.4e-11
Identity = 37/51 (72.55%), Postives = 39/51 (76.47%), Query Frame = 0

Query: 8   CGGEYSHGDEVGTLQVH--------KQWLRLKNWCPICKASVEEPASALPS 51
           C  EYS+GDEVGTLQ          +QWLRLKNWCPICKASVEEPASALPS
Sbjct: 481 CQEEYSNGDEVGTLQCEHTYHEGCIQQWLRLKNWCPICKASVEEPASALPS 531

BLAST of Bhi04G000871 vs. ExPASy TrEMBL
Match: A0A6J1BQM5 (probable E3 ubiquitin-protein ligase RHG1A isoform X4 OS=Momordica charantia OX=3673 GN=LOC111004854 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.4e-11
Identity = 37/51 (72.55%), Postives = 39/51 (76.47%), Query Frame = 0

Query: 8   CGGEYSHGDEVGTLQVH--------KQWLRLKNWCPICKASVEEPASALPS 51
           C  EYS+GDEVGTLQ          +QWLRLKNWCPICKASVEEPASALPS
Sbjct: 476 CQEEYSNGDEVGTLQCEHTYHEGCIQQWLRLKNWCPICKASVEEPASALPS 526

BLAST of Bhi04G000871 vs. ExPASy TrEMBL
Match: A0A6J1BUF6 (dentin sialophosphoprotein-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111004854 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.4e-11
Identity = 37/51 (72.55%), Postives = 39/51 (76.47%), Query Frame = 0

Query: 8   CGGEYSHGDEVGTLQVH--------KQWLRLKNWCPICKASVEEPASALPS 51
           C  EYS+GDEVGTLQ          +QWLRLKNWCPICKASVEEPASALPS
Sbjct: 483 CQEEYSNGDEVGTLQCEHTYHEGCIQQWLRLKNWCPICKASVEEPASALPS 533

BLAST of Bhi04G000871 vs. ExPASy TrEMBL
Match: A0A6J1BQG0 (uncharacterized RING finger protein ECU07_0330-like isoform X5 OS=Momordica charantia OX=3673 GN=LOC111004854 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.4e-11
Identity = 37/51 (72.55%), Postives = 39/51 (76.47%), Query Frame = 0

Query: 8   CGGEYSHGDEVGTLQVH--------KQWLRLKNWCPICKASVEEPASALPS 51
           C  EYS+GDEVGTLQ          +QWLRLKNWCPICKASVEEPASALPS
Sbjct: 467 CQEEYSNGDEVGTLQCEHTYHEGCIQQWLRLKNWCPICKASVEEPASALPS 517

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AT5G10650.11.9e-0850.98RING/U-box superfamily protein [more]
AT5G10650.21.9e-0850.98RING/U-box superfamily protein [more]
AT5G24870.13.3e-0859.57RING/U-box superfamily protein [more]
AT5G24870.23.3e-0859.57RING/U-box superfamily protein [more]
AT4G31450.18.0e-0748.94RING/U-box superfamily protein [more]
Match NameE-valueIdentityDescription
O495004.8e-0453.85E3 ubiquitin-protein ligase MBR2 OS=Arabidopsis thaliana OX=3702 GN=MBR2 PE=1 SV... [more]
Match NameE-valueIdentityDescription
A0A6J1BRY91.4e-1172.55dentin sialophosphoprotein-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC... [more]
A0A6J1BR851.4e-1172.55probable E3 ubiquitin-protein ligase RHG1A isoform X3 OS=Momordica charantia OX=... [more]
A0A6J1BQM51.4e-1172.55probable E3 ubiquitin-protein ligase RHG1A isoform X4 OS=Momordica charantia OX=... [more]
A0A6J1BUF61.4e-1172.55dentin sialophosphoprotein-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC... [more]
A0A6J1BQG01.4e-1172.55uncharacterized RING finger protein ECU07_0330-like isoform X5 OS=Momordica char... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi04M000871Bhi04M000871mRNA