CmaCh03G005580 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh03G005580
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	50S ribosomal protein L2, chloroplastic
Location	Cma_Chr03: 5174778 .. 5175956 (-)
RNA-Seq Expression	CmaCh03G005580
Synteny	CmaCh03G005580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATCGCCATCCTATTAAGTATTTTGATTTGATCTATGGACAGCATCGTTGTGGTAAAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCACAAGCGTCTATACCGTAAAATCGATTTTCGACGAAATGAAAAAGACATATATGGTAGAATCGTAACCATAGAAAATGACTCTAATCAAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGATATCTTTTACATCCCAGAGGGGCTATAATTGGAGATATCATTGTTTCTGTTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCTGTTTGAACTATTGATTTACGTATTTGGAAGTAACCAATTAGGTTTAGGACGAAACCTAGAAATCGATCACCGATCCAATTTGAGTACCTCAACAGAATAGACCTCAATAGAAAACTGAAGAGTAACGACAACAAGTGATTGAGTTCAGTTGTTTCTCATATAAAATTATCGACTCTAGAGATATAGTAATATGGAGAATACTAAATTGTTTCAAGCACCGACAGAACCAGAAGCGTCCCTTGTTTCAAAGAGAGGAGGACGGGTTATTCACATTTCATTTGATGGTCAGAGGCAAATTGAAAGCTAAACAGTGGTAATTCAAAGGATTCCCGAGGGGAAAAATAGAAATGTCTCCTACGTTACCCGTAATATGTAGAAGTATCGACGTAATTTCATAGAACATAAGCAAGATGAAGGAACGGGAAGACCTAGGATGTAGAAGATCATAACATGAGTGATTCGGGGGATTTGGATTCCTATATATCTACTCATGTGGTACTTCATTGGACGATATATATAAGATCCATATGTATAGATATCATCATCTACATCCAGAAAGCCGTATGCTTTGAAAGAAGCTTGTACAGTTTGGGAAGGGGTTTTGATGGATCAAAAAGAAGAATGTAAAAGAGAGAAAATCGGCCACATTAAAATTACTTTATAGGGAGGTCCGTTTGATATCCAAAAATTGCTCAGCAACAGTCGGACAAGTGGGAATGCTGAGGTAAACCTATTATTATTATTATTATTATTTGAAATTTTTTCTAAGTTATGATATCCAGTAACAAAATTGATTACGAAATCGTTTGGAAGTTGCTTCGTGAATCTGGATCATCCTAA

mRNA sequence

ATGTATCGCCATCCTATTAAGTATTTTGATTTGATCTATGGACAGCATCGTTGTGGTAAAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCACAAGCGTCTATACCGTAAAATCGATTTTCGACGAAATGAAAAAGACATATATGGTAGAATCGTAACCATAGAAAATGACTCTAATCAAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGATATCTTTTACATCCCAGAGGGGCTATAATTGGAGATATCATTGTTTCTGTTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCTAATGTAAAAGAGAGAAAATCGGCCACATTAAAATTACTTTATAGGGAGGTCCGTTTGATATCCAAAAATTGCTCAGCAACAGTCGGACAAGTGGGAATGCTGAGTAACAAAATTGATTACGAAATCGTTTGGAAGTTGCTTCGTGAATCTGGATCATCCTAA

Coding sequence (CDS)

ATGTATCGCCATCCTATTAAGTATTTTGATTTGATCTATGGACAGCATCGTTGTGGTAAAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCACAAGCGTCTATACCGTAAAATCGATTTTCGACGAAATGAAAAAGACATATATGGTAGAATCGTAACCATAGAAAATGACTCTAATCAAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGATATCTTTTACATCCCAGAGGGGCTATAATTGGAGATATCATTGTTTCTGTTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCTAATGTAAAAGAGAGAAAATCGGCCACATTAAAATTACTTTATAGGGAGGTCCGTTTGATATCCAAAAATTGCTCAGCAACAGTCGGACAAGTGGGAATGCTGAGTAACAAAATTGATTACGAAATCGTTTGGAAGTTGCTTCGTGAATCTGGATCATCCTAA

Protein sequence

MYRHPIKYFDLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIENDSNQNAYICLIHYGDGEKRYLLHPRGAIIGDIIVSVTEVPIKMGNALPLSANVKERKSATLKLLYREVRLISKNCSATVGQVGMLSNKIDYEIVWKLLRESGSS

Homology

[Close]

BLAST of CmaCh03G005580 vs. ExPASy Swiss-Prot
Match: A0A398 (50S ribosomal protein L2-B, chloroplastic OS=Coffea arabica OX=13443 GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 5.9e-59
Identity = 121/168 (72.02%), Postives = 125/168 (74.40%), Query Frame = 0


Query: 10  DLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIENDSNQNAY 69
           +LIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRR EKDIYGRIVTIE D N+NAY
Sbjct: 29  NLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRTEKDIYGRIVTIEYDPNRNAY 88

Query: 70  ICLIHYGDGEKRYLLHPRGAIIGDIIVSVTEVPIKMGNALPLSAN--------------- 129
           ICLIHYGDGEKRY+LHPRGA+IGD IVS TEVPIKMGNALPLSA                
Sbjct: 89  ICLIHYGDGEKRYILHPRGALIGDTIVSGTEVPIKMGNALPLSATDMPLGTAIHNIEITL 148

Query: 130 -----------------VKERKSATLKLLYREVRLISKNCSATVGQVG 146
                             KE KSATLKL   EVRLISKNCSATVGQVG
Sbjct: 149 GKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVG 196

[Close]

BLAST of CmaCh03G005580 vs. ExPASy Swiss-Prot
Match: Q09MB2 (50S ribosomal protein L2, chloroplastic OS=Citrus sinensis OX=2711 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 7.7e-59
Identity = 121/166 (72.89%), Postives = 125/166 (75.30%), Query Frame = 0


Query: 10  DLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIENDSNQNAY 69
           +LIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIE D N+NAY
Sbjct: 29  NLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAY 88

Query: 70  ICLIHYGDGEKRYLLHPRGAIIGDIIVSVTEVPIKMGNALPLS----------------- 129
           ICLIHYGDGEKRY+LHPRGAIIGD IVS TEVPIKMGNALPL+                 
Sbjct: 89  ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMPLGTAIHNIEITLGK 148

Query: 130 -------------ANVKERKSATLKLLYREVRLISKNCSATVGQVG 146
                           KE KSATLKL   EVRLISKNCSATVGQVG
Sbjct: 149 GGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVG 194

[Close]

BLAST of CmaCh03G005580 vs. ExPASy Swiss-Prot
Match: Q4VZK5 (50S ribosomal protein L2, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 7.7e-59
Identity = 121/166 (72.89%), Postives = 125/166 (75.30%), Query Frame = 0


Query: 10  DLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIENDSNQNAY 69
           +LIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIE D N+NAY
Sbjct: 29  NLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAY 88

Query: 70  ICLIHYGDGEKRYLLHPRGAIIGDIIVSVTEVPIKMGNALPLS----------------- 129
           ICLIHYGDGEKRY+LHPRGAIIGD IVS TEVPIKMGNALPL+                 
Sbjct: 89  ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMPLGTAIHNIEITLGK 148

Query: 130 -------------ANVKERKSATLKLLYREVRLISKNCSATVGQVG 146
                           KE KSATLKL   EVRLISKNCSATVGQVG
Sbjct: 149 GGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVG 194

[Close]

BLAST of CmaCh03G005580 vs. ExPASy Swiss-Prot
Match: Q0G9P9 (50S ribosomal protein L2, chloroplastic OS=Daucus carota OX=4039 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 7.7e-59
Identity = 121/166 (72.89%), Postives = 125/166 (75.30%), Query Frame = 0


Query: 10  DLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIENDSNQNAY 69
           +LIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIE D N+NAY
Sbjct: 29  NLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAY 88

Query: 70  ICLIHYGDGEKRYLLHPRGAIIGDIIVSVTEVPIKMGNALPLS----------------- 129
           ICLIHYGDGEKRY+LHPRGAIIGD IVS TEVPIKMGNALPL+                 
Sbjct: 89  ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMPLGTAIHNIEITRGR 148

Query: 130 -------------ANVKERKSATLKLLYREVRLISKNCSATVGQVG 146
                           KE KSATLKL   EVRLISKNCSATVGQVG
Sbjct: 149 GGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVG 194

[Close]

BLAST of CmaCh03G005580 vs. ExPASy Swiss-Prot
Match: Q0ZIX7 (50S ribosomal protein L2, chloroplastic OS=Vitis vinifera OX=29760 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 7.7e-59
Identity = 121/166 (72.89%), Postives = 125/166 (75.30%), Query Frame = 0


Query: 10  DLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIENDSNQNAY 69
           +LIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIE D N+NAY
Sbjct: 29  NLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAY 88

Query: 70  ICLIHYGDGEKRYLLHPRGAIIGDIIVSVTEVPIKMGNALPLS----------------- 129
           ICLIHYGDGEKRY+LHPRGAIIGD IVS TEVPIKMGNALPL+                 
Sbjct: 89  ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMPLGTAIHNIEITLGK 148

Query: 130 -------------ANVKERKSATLKLLYREVRLISKNCSATVGQVG 146
                           KE KSATLKL   EVRLISKNCSATVGQVG
Sbjct: 149 GGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVG 194

[Close]

BLAST of CmaCh03G005580 vs. ExPASy TrEMBL
Match: A0A6B9IWI7 (Ribosomal protein L2 OS=Ageratum conyzoides OX=68299 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 4.7e-59
Identity = 122/141 (86.52%), Postives = 125/141 (88.65%), Query Frame = 0


Query: 10  DLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIENDSNQNAY 69
           +LIYGQH CGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIE D N+NAY
Sbjct: 8   NLIYGQHHCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAY 67

Query: 70  ICLIHYGDGEKRYLLHPRGAIIGDIIVSVTEVPIKMGNALPLSANV-----KERKSATLK 129
           ICLIHY DGEKRY+LHPRGAIIGD IVS TEVPIKMGNALPLSA V     KE KSATLK
Sbjct: 68  ICLIHYRDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAVVAKLIAKEGKSATLK 127

Query: 130 LLYREVRLISKNCSATVGQVG 146
           L   EVRLISKNCSATVGQVG
Sbjct: 128 LPSGEVRLISKNCSATVGQVG 148

[Close]

BLAST of CmaCh03G005580 vs. ExPASy TrEMBL
Match: A0A2D1GS44 (Ribosomal protein L2 OS=Taxillus sutchuenensis OX=227910 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 1.8e-58
Identity = 121/147 (82.31%), Postives = 126/147 (85.71%), Query Frame = 0


Query: 10  DLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIENDSNQNAY 69
           +LIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIE D N+NAY
Sbjct: 29  NLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAY 88

Query: 70  ICLIHYGDGEKRYLLHPRGAIIGDIIVSVTEVPIKMGNALPLSA-----------NVKER 129
           ICLIHYGDGEKRY+LHPRGAIIG+ IVS TEVPIKMGNALPLSA             KE 
Sbjct: 89  ICLIHYGDGEKRYILHPRGAIIGETIVSGTEVPIKMGNALPLSAVARAAGAVAKLIAKEG 148

Query: 130 KSATLKLLYREVRLISKNCSATVGQVG 146
           KSATLKL   EVRLIS+NCSATVGQVG
Sbjct: 149 KSATLKLPSGEVRLISQNCSATVGQVG 175

[Close]

BLAST of CmaCh03G005580 vs. ExPASy TrEMBL
Match: A0A7L8XJA6 (Ribosomal protein L2 OS=Taxillus yadoriki OX=2777184 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 1.8e-58
Identity = 121/147 (82.31%), Postives = 126/147 (85.71%), Query Frame = 0


Query: 10  DLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIENDSNQNAY 69
           +LIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIE D N+NAY
Sbjct: 29  NLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAY 88

Query: 70  ICLIHYGDGEKRYLLHPRGAIIGDIIVSVTEVPIKMGNALPLSA-----------NVKER 129
           ICLIHYGDGEKRY+LHPRGAIIG+ IVS TEVPIKMGNALPLSA             KE 
Sbjct: 89  ICLIHYGDGEKRYILHPRGAIIGETIVSGTEVPIKMGNALPLSAVARAAGAVAKLIAKEG 148

Query: 130 KSATLKLLYREVRLISKNCSATVGQVG 146
           KSATLKL   EVRLIS+NCSATVGQVG
Sbjct: 149 KSATLKLPSGEVRLISQNCSATVGQVG 175

[Close]

BLAST of CmaCh03G005580 vs. ExPASy TrEMBL
Match: A0A5J6KRQ3 (Ribosomal protein L2 OS=Taxillus vestitus OX=2650741 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 1.8e-58
Identity = 121/147 (82.31%), Postives = 126/147 (85.71%), Query Frame = 0


Query: 10  DLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIENDSNQNAY 69
           +LIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIE D N+NAY
Sbjct: 29  NLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAY 88

Query: 70  ICLIHYGDGEKRYLLHPRGAIIGDIIVSVTEVPIKMGNALPLSA-----------NVKER 129
           ICLIHYGDGEKRY+LHPRGAIIG+ IVS TEVPIKMGNALPLSA             KE 
Sbjct: 89  ICLIHYGDGEKRYILHPRGAIIGETIVSGTEVPIKMGNALPLSAVARAAGAVAKLIAKEG 148

Query: 130 KSATLKLLYREVRLISKNCSATVGQVG 146
           KSATLKL   EVRLIS+NCSATVGQVG
Sbjct: 149 KSATLKLPSGEVRLISQNCSATVGQVG 175

[Close]

BLAST of CmaCh03G005580 vs. ExPASy TrEMBL
Match: A0A481T3K8 (Ribosomal protein L2 OS=Scurrula notothixoides OX=227902 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 1.8e-58
Identity = 121/147 (82.31%), Postives = 126/147 (85.71%), Query Frame = 0


Query: 10  DLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIENDSNQNAY 69
           +LIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIE D N+NAY
Sbjct: 29  NLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAY 88

Query: 70  ICLIHYGDGEKRYLLHPRGAIIGDIIVSVTEVPIKMGNALPLSA-----------NVKER 129
           ICLIHYGDGEKRY+LHPRGAIIG+ IVS TEVPIKMGNALPLSA             KE 
Sbjct: 89  ICLIHYGDGEKRYILHPRGAIIGETIVSGTEVPIKMGNALPLSAVARAAGAVAKLIAKEG 148

Query: 130 KSATLKLLYREVRLISKNCSATVGQVG 146
           KSATLKL   EVRLIS+NCSATVGQVG
Sbjct: 149 KSATLKLPSGEVRLISQNCSATVGQVG 175

[Close]

BLAST of CmaCh03G005580 vs. NCBI nr
Match: QGZ10270.1 (ribosomal protein L2 [Ageratum conyzoides])

HSP 1 Score: 237.3 bits (604), Expect = 9.7e-59
Identity = 122/141 (86.52%), Postives = 125/141 (88.65%), Query Frame = 0


Query: 10  DLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIENDSNQNAY 69
           +LIYGQH CGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIE D N+NAY
Sbjct: 8   NLIYGQHHCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAY 67

Query: 70  ICLIHYGDGEKRYLLHPRGAIIGDIIVSVTEVPIKMGNALPLSANV-----KERKSATLK 129
           ICLIHY DGEKRY+LHPRGAIIGD IVS TEVPIKMGNALPLSA V     KE KSATLK
Sbjct: 68  ICLIHYRDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAVVAKLIAKEGKSATLK 127

Query: 130 LLYREVRLISKNCSATVGQVG 146
           L   EVRLISKNCSATVGQVG
Sbjct: 128 LPSGEVRLISKNCSATVGQVG 148

[Close]

BLAST of CmaCh03G005580 vs. NCBI nr
Match: YP_009442434.1 (ribosomal protein L2 [Taxillus sutchuenensis] >ATN95782.1 ribosomal protein L2 [Taxillus sutchuenensis])

HSP 1 Score: 235.3 bits (599), Expect = 3.7e-58
Identity = 121/147 (82.31%), Postives = 126/147 (85.71%), Query Frame = 0


Query: 10  DLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIENDSNQNAY 69
           +LIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIE D N+NAY
Sbjct: 29  NLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAY 88

Query: 70  ICLIHYGDGEKRYLLHPRGAIIGDIIVSVTEVPIKMGNALPLSA-----------NVKER 129
           ICLIHYGDGEKRY+LHPRGAIIG+ IVS TEVPIKMGNALPLSA             KE 
Sbjct: 89  ICLIHYGDGEKRYILHPRGAIIGETIVSGTEVPIKMGNALPLSAVARAAGAVAKLIAKEG 148

Query: 130 KSATLKLLYREVRLISKNCSATVGQVG 146
           KSATLKL   EVRLIS+NCSATVGQVG
Sbjct: 149 KSATLKLPSGEVRLISQNCSATVGQVG 175

[Close]

BLAST of CmaCh03G005580 vs. NCBI nr
Match: YP_009708754.1 (ribosomal protein L2 [Taxillus vestitus] >QEV86363.1 ribosomal protein L2 [Taxillus vestitus])

HSP 1 Score: 235.3 bits (599), Expect = 3.7e-58
Identity = 121/147 (82.31%), Postives = 126/147 (85.71%), Query Frame = 0


Query: 10  DLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIENDSNQNAY 69
           +LIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIE D N+NAY
Sbjct: 29  NLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAY 88

Query: 70  ICLIHYGDGEKRYLLHPRGAIIGDIIVSVTEVPIKMGNALPLSA-----------NVKER 129
           ICLIHYGDGEKRY+LHPRGAIIG+ IVS TEVPIKMGNALPLSA             KE 
Sbjct: 89  ICLIHYGDGEKRYILHPRGAIIGETIVSGTEVPIKMGNALPLSAVARAAGAVAKLIAKEG 148

Query: 130 KSATLKLLYREVRLISKNCSATVGQVG 146
           KSATLKL   EVRLIS+NCSATVGQVG
Sbjct: 149 KSATLKLPSGEVRLISQNCSATVGQVG 175

[Close]

BLAST of CmaCh03G005580 vs. NCBI nr
Match: YP_009948096.1 (ribosomal protein L2 [Taxillus yadoriki] >QOH97221.1 ribosomal protein L2 [Taxillus yadoriki])

HSP 1 Score: 235.3 bits (599), Expect = 3.7e-58
Identity = 121/147 (82.31%), Postives = 126/147 (85.71%), Query Frame = 0


Query: 10  DLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIENDSNQNAY 69
           +LIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIE D N+NAY
Sbjct: 29  NLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAY 88

Query: 70  ICLIHYGDGEKRYLLHPRGAIIGDIIVSVTEVPIKMGNALPLSA-----------NVKER 129
           ICLIHYGDGEKRY+LHPRGAIIG+ IVS TEVPIKMGNALPLSA             KE 
Sbjct: 89  ICLIHYGDGEKRYILHPRGAIIGETIVSGTEVPIKMGNALPLSAVARAAGAVAKLIAKEG 148

Query: 130 KSATLKLLYREVRLISKNCSATVGQVG 146
           KSATLKL   EVRLIS+NCSATVGQVG
Sbjct: 149 KSATLKLPSGEVRLISQNCSATVGQVG 175

[Close]

BLAST of CmaCh03G005580 vs. NCBI nr
Match: YP_009572004.1 (ribosomal protein L2 [Scurrula notothixoides] >QBH75441.1 ribosomal protein L2 [Scurrula notothixoides])

HSP 1 Score: 235.3 bits (599), Expect = 3.7e-58
Identity = 121/147 (82.31%), Postives = 126/147 (85.71%), Query Frame = 0


Query: 10  DLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIENDSNQNAY 69
           +LIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIE D N+NAY
Sbjct: 29  NLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAY 88

Query: 70  ICLIHYGDGEKRYLLHPRGAIIGDIIVSVTEVPIKMGNALPLSA-----------NVKER 129
           ICLIHYGDGEKRY+LHPRGAIIG+ IVS TEVPIKMGNALPLSA             KE 
Sbjct: 89  ICLIHYGDGEKRYILHPRGAIIGETIVSGTEVPIKMGNALPLSAVARAAGAVAKLIAKEG 148

Query: 130 KSATLKLLYREVRLISKNCSATVGQVG 146
           KSATLKL   EVRLIS+NCSATVGQVG
Sbjct: 149 KSATLKLPSGEVRLISQNCSATVGQVG 175

[Close]

BLAST of CmaCh03G005580 vs. TAIR 10
Match: ATCG00830.1 (ribosomal protein L2 )

HSP 1 Score: 217.2 bits (552), Expect = 9.7e-57
Identity = 117/166 (70.48%), Postives = 121/166 (72.89%), Query Frame = 0


Query: 10  DLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIENDSNQNAY 69
           +LI GQH CGKGRNARGIITA HRGGGHKRLYRKIDFRRN KDIYGRIVTIE D N+NAY
Sbjct: 29  NLICGQHHCGKGRNARGIITARHRGGGHKRLYRKIDFRRNAKDIYGRIVTIEYDPNRNAY 88

Query: 70  ICLIHYGDGEKRYLLHPRGAIIGDIIVSVTEVPIKMGNALPLS----------------- 129
           ICLIHYGDGEKRY+LHPRGAIIGD IVS TEVPIKMGNALPL+                 
Sbjct: 89  ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMPLGTAIHNIEITLGR 148

Query: 130 -------------ANVKERKSATLKLLYREVRLISKNCSATVGQVG 146
                           KE KSATLKL   EVRLISKNCSATVGQVG
Sbjct: 149 GGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVG 194

[Close]

BLAST of CmaCh03G005580 vs. TAIR 10
Match: ATCG01310.1 (ribosomal protein L2 )

HSP 1 Score: 217.2 bits (552), Expect = 9.7e-57
Identity = 117/166 (70.48%), Postives = 121/166 (72.89%), Query Frame = 0


Query: 10  DLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIENDSNQNAY 69
           +LI GQH CGKGRNARGIITA HRGGGHKRLYRKIDFRRN KDIYGRIVTIE D N+NAY
Sbjct: 29  NLICGQHHCGKGRNARGIITARHRGGGHKRLYRKIDFRRNAKDIYGRIVTIEYDPNRNAY 88

Query: 70  ICLIHYGDGEKRYLLHPRGAIIGDIIVSVTEVPIKMGNALPLS----------------- 129
           ICLIHYGDGEKRY+LHPRGAIIGD IVS TEVPIKMGNALPL+                 
Sbjct: 89  ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMPLGTAIHNIEITLGR 148

Query: 130 -------------ANVKERKSATLKLLYREVRLISKNCSATVGQVG 146
                           KE KSATLKL   EVRLISKNCSATVGQVG
Sbjct: 149 GGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVG 194

[Close]

BLAST of CmaCh03G005580 vs. TAIR 10
Match: AT2G07715.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 47.4 bits (111), Expect = 1.3e-05
Identity = 25/58 (43.10%), Postives = 37/58 (63.79%), Query Frame = 0


Query: 21 GRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIENDSNQNAYICLIHYGDG 79
          GRN+ G IT  HRGGG KRL R+ID +R+   + G + +IE D N+++ I  + +  G
Sbjct: 21 GRNSSGRITVFHRGGGSKRLLRRIDLKRSTSSM-GIVESIEYDPNRSSQIAPVRWIKG 77

[Close]

BLAST of CmaCh03G005580 vs. TAIR 10
Match: ATMG00560.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 47.4 bits (111), Expect = 1.3e-05
Identity = 25/58 (43.10%), Postives = 37/58 (63.79%), Query Frame = 0


Query: 21 GRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIENDSNQNAYICLIHYGDG 79
          GRN+ G IT  HRGGG KRL R+ID +R+   + G + +IE D N+++ I  + +  G
Sbjct: 21 GRNSSGRITVFHRGGGSKRLLRRIDLKRSTSSM-GIVESIEYDPNRSSQIAPVRWIKG 77

The following BLAST results are available for this feature:

BLAST of CmaCh03G005580 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A0A398	5.9e-59	72.02	50S ribosomal protein L2-B, chloroplastic OS=Coffea arabica OX=13443 GN=rpl2-B P...	[more]
Q09MB2	7.7e-59	72.89	50S ribosomal protein L2, chloroplastic OS=Citrus sinensis OX=2711 GN=rpl2-A PE=...	[more]
Q4VZK5	7.7e-59	72.89	50S ribosomal protein L2, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl2-A PE=...	[more]
Q0G9P9	7.7e-59	72.89	50S ribosomal protein L2, chloroplastic OS=Daucus carota OX=4039 GN=rpl2-A PE=3 ...	[more]
Q0ZIX7	7.7e-59	72.89	50S ribosomal protein L2, chloroplastic OS=Vitis vinifera OX=29760 GN=rpl2-A PE=...	[more]

BLAST of CmaCh03G005580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6B9IWI7	4.7e-59	86.52	Ribosomal protein L2 OS=Ageratum conyzoides OX=68299 GN=rpl2 PE=3 SV=1	[more]
A0A2D1GS44	1.8e-58	82.31	Ribosomal protein L2 OS=Taxillus sutchuenensis OX=227910 GN=rpl2 PE=3 SV=1	[more]
A0A7L8XJA6	1.8e-58	82.31	Ribosomal protein L2 OS=Taxillus yadoriki OX=2777184 GN=rpl2 PE=3 SV=1	[more]
A0A5J6KRQ3	1.8e-58	82.31	Ribosomal protein L2 OS=Taxillus vestitus OX=2650741 GN=rpl2 PE=3 SV=1	[more]
A0A481T3K8	1.8e-58	82.31	Ribosomal protein L2 OS=Scurrula notothixoides OX=227902 GN=rpl2 PE=3 SV=1	[more]

BLAST of CmaCh03G005580 vs. NCBI nr


Match Name	E-value	Identity	Description
QGZ10270.1	9.7e-59	86.52	ribosomal protein L2 [Ageratum conyzoides]	[more]
YP_009442434.1	3.7e-58	82.31	ribosomal protein L2 [Taxillus sutchuenensis] >ATN95782.1 ribosomal protein L2 [...	[more]
YP_009708754.1	3.7e-58	82.31	ribosomal protein L2 [Taxillus vestitus] >QEV86363.1 ribosomal protein L2 [Taxil...	[more]
YP_009948096.1	3.7e-58	82.31	ribosomal protein L2 [Taxillus yadoriki] >QOH97221.1 ribosomal protein L2 [Taxil...	[more]
YP_009572004.1	3.7e-58	82.31	ribosomal protein L2 [Scurrula notothixoides] >QBH75441.1 ribosomal protein L2 [...	[more]

BLAST of CmaCh03G005580 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00830.1	9.7e-57	70.48	ribosomal protein L2	[more]
ATCG01310.1	9.7e-57	70.48	ribosomal protein L2	[more]
AT2G07715.1	1.3e-05	43.10	Nucleic acid-binding, OB-fold-like protein	[more]
ATMG00560.1	1.3e-05	43.10	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002171	Ribosomal protein L2	SMART	SM01383	Ribosomal_L2_2	coord: 21..97 e-value: 1.4E-29 score: 114.3
IPR002171	Ribosomal protein L2	PANTHER	PTHR13691	RIBOSOMAL PROTEIN L2	coord: 10..113
None	No IPR available	GENE3D	2.40.50.140		coord: 4..96 e-value: 1.9E-32 score: 113.2
None	No IPR available	PANTHER	PTHR13691:SF55	50S RIBOSOMAL PROTEIN L2, CHLOROPLASTIC	coord: 10..113
IPR022666	Ribosomal Proteins L2, RNA binding domain	PFAM	PF00181	Ribosomal_L2	coord: 21..97 e-value: 5.7E-26 score: 90.3
IPR014722	Ribosomal protein L2, domain 2	GENE3D	2.30.30.30		coord: 112..144 e-value: 9.4E-7 score: 30.6
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 10..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh03G005580.1	CmaCh03G005580.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome