CmaCh01G012550 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh01G012550
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Transmembrane protein
Location	Cma_Chr01: 9032999 .. 9035584 (+)
RNA-Seq Expression	CmaCh01G012550
Synteny	CmaCh01G012550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATAAAAACGACGTTTTTTTCCCCTAATTTTGCGAAGGTGAAGAAAATCTGAAATTTTGACTTTTTCTAGAACCCTGGGTTAGGGCAACGAGACGACGGTGACGGCCTGAAGGAAGAAGCTAATGACGGGAGAAGAGGTTGCTGGTCCGGCGGGCCCTAAGGTTCTACGTTTGCTCTATTTCGCCGGTGCCGGATGTAAATTTCTTCGATTCACCTCTTTTTCTTCTCTGTTTTAATTTTTGATTGTTTCGATTTATTAATTGTTCTATTCGATTATGTTTTGTAGTTGTTTTCACAATCGCGATGAACAAGTGGCGGGAGATCGAGCACAAATCTCTGTTGCAACAACGGCAGAAGCAGAGATTGGATCATCAATTCGCGGAAACTCCTAATGATGCAGTACAGAAAGTCGTTAAGTGAACATAGGTTCGTTTGTTATTTTCAGAAATTTCACTTGTATTACCAACAGGATATCAGATTTTTTTTTTTTTCCTTCTATTTAGGACAATAATGTTGGATGGATGAAAGATTTTTCTGTGATTATAATTATGCTGTGAGGTTTCTTCCTTCTCTACGAATCGCAGCTCTGCTCCCTTTCTATAGCAATAATGGAAGGGACAAACACTTCTGGAATGCAGCTTTATCAATTATCACCTTTAAGAAGAGAAAGTGTAATGACTACAATAATTGAGTGCAATTGTTTCCCGAAAATGAAAGGAGGGGCGGGGGGGCGGTGGAAATTCTTTCGAATTAAAGTTTCAGATTGGAAATGTCATTGATGACTTTGAGGAGAAAAAGAAGGAAAAAAAAAGACAATGGAACTTATTGGAGATTAGAATTGTGACGTCTGCCGGAACCAAAATAAGTTGGATAGAAGTTGTTCCGTCGGATTATATAATACCATATTCACGGCTGTTTTATATATTGTGATTGATGCGGGATTCATCTGTTGTCTTTAAAATATACCATACATTTTGGCACCTTATTTTGTGGGATTCTGGCCCTTATACAGAGTGGTTTGAGCTTGTGTTAGTAGTTATCTTATGAAGAAATGATGTTGTAACTACACGACCAAGGGCAGCTTGATTGTGAGATCCCACATCGATTGGGGAGGAGAACGAAACATTTTTTAAAAGGGTGTGGAAACCTCTCCCTAGGAGACGCTTTTTAAAAACCTTGAGGGGAATATTTGCTAGCTGTGGTCTTAGGCCGTTATATTGATAAGCTTGTTCTTTTTTCAGACTCAGCTAGTACTAGTATTTTGTCTTGTTCTTAATTTCTTTCTCCATCATATTCAGGATGAGCCAACGGGGATGCTATTTGAAAATTTGAAATAAAGAAGTGGAAGTAATTACTTAAGAATACAACAGAAGTTATTGACTTTCTGGCATGAGGGATTTTTCTTTTGTGTATGAGATATGTTTACTTTTGGAGTTGTAGTTCATTCATTTGATGTGTACCCCTTGGATTCAGTTACTGTATAGTTGACTTTTGTGGGTGGCTATTCTGCCTCGTGGTCTTAATAATTTCTTTCAATTTTAGGATAACGTTTTCCACAAGCTAAGATTTCTAATGAACTTTAAAAGTAAGGCCTTGAGCATCTTCGTAGACTTTGTGAATTTGAGATAGCAACTAAAGTTTGTACAGTAAAAGACTAGCTTATCCAAATTACTGTTCGAGAATATTTTATACTTCACCAAAACATCCATCTGGGCATACATCTGTGTTAGTATGTCCTTTTCAACTTGAAGAATGTAATAATTATTCTTGTAATCAAGGCTTTATTGCTTGTGTGCATGATATGGTTATCTTTTGGCGACTGTCATTTTATGGTCGTTTGCTCAGTTCCCAAAACTTTATCTACAAGAATCCATTGGAGTTGTATAATTATTTTAGTTCTTCATTGTCTGTGGATGAATTATTATTGTGCTACTCCCTGTAAATTTTTTTTTTTAACATATTGTCATTTCTGTAAAACAAAAGAAAAGGAAGGTAGTTAATGCGATGTTTTCTTGTTTTATGTTTTAAATATGTAGTTTTAATGCTTAATTCAAGTCCTTTATTTTCCCTTTAAAGCTGATCCTACGTGTATGCATGGTGTCACAATCACACTTTTTATGGCAGCGGACATTGCGATTGTGAGCATGACCGTGACACATGGCAGGGGTGATGTTCAAGGATCTTAAGATGCTTCCGGTTCCAGCTCAACAGTTAAGTCTGCTATTTTCAACAAGATTTTTTGTTCTTGATACAAGTATGCTAGGATTATCTATGCTTTTTAACTGTGACGCTGGGTAGATTTGAGCCATTACCAAACAAATGAGGCGTCTTTTAGTTGTACTGTGTTCTCCTTCATCCTGGATCAAGCCATCTCTCTGTTTCTAATCTCCACTATATGTACAAGTGCATTTTTAAAACTAGTACTGTCATCCGGTAACTAAAGTAAATTTCTCCTTTTCTACCTTTTGGTCAATTCTGAAGTTCAATTCTGATTATTTATGTTAGCATAGGAGCTGATTGCATTTATTAATCATTCAATCTATATAGATGGGAAAATATGACTTTGGGGTGGTTTAGAATTCCAAT

mRNA sequence

AATAAAAACGACGTTTTTTTCCCCTAATTTTGCGAAGGTGAAGAAAATCTGAAATTTTGACTTTTTCTAGAACCCTGGGTTAGGGCAACGAGACGACGGTGACGGCCTGAAGGAAGAAGCTAATGACGGGAGAAGAGGTTGCTGGTCCGGCGGGCCCTAAGGTTCTACGTTTGCTCTATTTCGCCGGTGCCGGATTTGTTTTCACAATCGCGATGAACAAGTGGCGGGAGATCGAGCACAAATCTCTGTTGCAACAACGGCAGAAGCAGAGATTGGATCATCAATTCGCGGAAACTCCTAATGATGCAGTACAGAAAGTCGTTAAGTGAACATAGCGGACATTGCGATTGTGAGCATGACCGTGACACATGGCAGGGGTGATGTTCAAGGATCTTAAGATGCTTCCGGTTCCAGCTCAACAGTTAAGTCTGCTATTTTCAACAAGATTTTTTGTTCTTGATACAAGTATGCTAGGATTATCTATGCTTTTTAACTGTGACGCTGGGTAGATTTGAGCCATTACCAAACAAATGAGGCGTCTTTTAGTTGTACTGTGTTCTCCTTCATCCTGGATCAAGCCATCTCTCTGTTTCTAATCTCCACTATATGTACAAGTGCATTTTTAAAACTAGTACTGTCATCCGGTAACTAAAGTAAATTTCTCCTTTTCTACCTTTTGGTCAATTCTGAAGTTCAATTCTGATTATTTATGTTAGCATAGGAGCTGATTGCATTTATTAATCATTCAATCTATATAGATGGGAAAATATGACTTTGGGGTGGTTTAGAATTCCAAT

Coding sequence (CDS)

ATGACGGGAGAAGAGGTTGCTGGTCCGGCGGGCCCTAAGGTTCTACGTTTGCTCTATTTCGCCGGTGCCGGATTTGTTTTCACAATCGCGATGAACAAGTGGCGGGAGATCGAGCACAAATCTCTGTTGCAACAACGGCAGAAGCAGAGATTGGATCATCAATTCGCGGAAACTCCTAATGATGCAGTACAGAAAGTCGTTAAGTGA

Protein sequence

MTGEEVAGPAGPKVLRLLYFAGAGFVFTIAMNKWREIEHKSLLQQRQKQRLDHQFAETPNDAVQKVVK

Homology

[Close]

BLAST of CmaCh01G012550 vs. ExPASy TrEMBL
Match: A0A6J1IVQ6 (uncharacterized protein LOC111481043 OS=Cucurbita maxima OX=3661 GN=LOC111481043 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.2e-29
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MTGEEVAGPAGPKVLRLLYFAGAGFVFTIAMNKWREIEHKSLLQQRQKQRLDHQFAETPN 60
          MTGEEVAGPAGPKVLRLLYFAGAGFVFTIAMNKWREIEHKSLLQQRQKQRLDHQFAETPN
Sbjct: 1  MTGEEVAGPAGPKVLRLLYFAGAGFVFTIAMNKWREIEHKSLLQQRQKQRLDHQFAETPN 60

Query: 61 DAVQKVVK 69
          DAVQKVVK
Sbjct: 61 DAVQKVVK 68

[Close]

BLAST of CmaCh01G012550 vs. ExPASy TrEMBL
Match: A0A6J1FMP5 (uncharacterized protein LOC111446806 OS=Cucurbita moschata OX=3662 GN=LOC111446806 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.0e-28
Identity = 66/68 (97.06%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 1  MTGEEVAGPAGPKVLRLLYFAGAGFVFTIAMNKWREIEHKSLLQQRQKQRLDHQFAETPN 60
          MTGEEVAGPAGPKVLRLLYF GAGFVFTIAMNKWREIEHKSLLQQRQKQRLDHQFAE+PN
Sbjct: 1  MTGEEVAGPAGPKVLRLLYFVGAGFVFTIAMNKWREIEHKSLLQQRQKQRLDHQFAESPN 60

Query: 61 DAVQKVVK 69
          DAVQKVVK
Sbjct: 61 DAVQKVVK 68

[Close]

BLAST of CmaCh01G012550 vs. ExPASy TrEMBL
Match: A0A6J1C1U1 (uncharacterized protein LOC111006563 OS=Momordica charantia OX=3673 GN=LOC111006563 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 6.5e-23
Identity = 55/68 (80.88%), Postives = 62/68 (91.18%), Query Frame = 0


Query: 1  MTGEEVAGPAGPKVLRLLYFAGAGFVFTIAMNKWREIEHKSLLQQRQKQRLDHQFAETPN 60
          M GEEV+GPAGPKVLR LYFAGAGFVF IA+NKWRE+E +SLLQQ QKQ L+HQF+ETPN
Sbjct: 1  MAGEEVSGPAGPKVLRFLYFAGAGFVFAIAVNKWREMERRSLLQQHQKQMLNHQFSETPN 60

Query: 61 DAVQKVVK 69
          DAVQKVV+
Sbjct: 61 DAVQKVVE 68

[Close]

BLAST of CmaCh01G012550 vs. ExPASy TrEMBL
Match: A0A0A0L208 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G625040 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 3.2e-22
Identity = 53/68 (77.94%), Postives = 62/68 (91.18%), Query Frame = 0


Query: 1  MTGEEVAGPAGPKVLRLLYFAGAGFVFTIAMNKWREIEHKSLLQQRQKQRLDHQFAETPN 60
          MTGEEV GPAGPK+LRLLYFAGAGF+ + A+NKWREIE  SLLQQ+QKQRL+HQ +E+PN
Sbjct: 1  MTGEEVTGPAGPKILRLLYFAGAGFIVSFAINKWREIERNSLLQQQQKQRLNHQLSESPN 60

Query: 61 DAVQKVVK 69
          DAVQKVV+
Sbjct: 61 DAVQKVVE 68

[Close]

BLAST of CmaCh01G012550 vs. ExPASy TrEMBL
Match: A0A090ITT6 (Uncharacterized protein OS=Cucumis sativus OX=3659 PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 9.3e-22
Identity = 52/68 (76.47%), Postives = 62/68 (91.18%), Query Frame = 0


Query: 1  MTGEEVAGPAGPKVLRLLYFAGAGFVFTIAMNKWREIEHKSLLQQRQKQRLDHQFAETPN 60
          MTG+EV GPAGPK+LRLLYFAGAGF+ + A+NKWREIE  SLLQQ+QKQRL+HQ +E+PN
Sbjct: 1  MTGKEVTGPAGPKILRLLYFAGAGFIVSFAINKWREIERNSLLQQQQKQRLNHQLSESPN 60

Query: 61 DAVQKVVK 69
          DAVQKVV+
Sbjct: 61 DAVQKVVE 68

[Close]

BLAST of CmaCh01G012550 vs. NCBI nr
Match: XP_022982102.1 (uncharacterized protein LOC111481043 [Cucurbita maxima])

HSP 1 Score: 138.3 bits (347), Expect = 2.5e-29
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MTGEEVAGPAGPKVLRLLYFAGAGFVFTIAMNKWREIEHKSLLQQRQKQRLDHQFAETPN 60
          MTGEEVAGPAGPKVLRLLYFAGAGFVFTIAMNKWREIEHKSLLQQRQKQRLDHQFAETPN
Sbjct: 1  MTGEEVAGPAGPKVLRLLYFAGAGFVFTIAMNKWREIEHKSLLQQRQKQRLDHQFAETPN 60

Query: 61 DAVQKVVK 69
          DAVQKVVK
Sbjct: 61 DAVQKVVK 68

[Close]

BLAST of CmaCh01G012550 vs. NCBI nr
Match: XP_022941532.1 (uncharacterized protein LOC111446806 [Cucurbita moschata] >KAG6607933.1 hypothetical protein SDJN03_01275, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 135.2 bits (339), Expect = 2.1e-28
Identity = 66/68 (97.06%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 1  MTGEEVAGPAGPKVLRLLYFAGAGFVFTIAMNKWREIEHKSLLQQRQKQRLDHQFAETPN 60
          MTGEEVAGPAGPKVLRLLYF GAGFVFTIAMNKWREIEHKSLLQQRQKQRLDHQFAE+PN
Sbjct: 1  MTGEEVAGPAGPKVLRLLYFVGAGFVFTIAMNKWREIEHKSLLQQRQKQRLDHQFAESPN 60

Query: 61 DAVQKVVK 69
          DAVQKVVK
Sbjct: 61 DAVQKVVK 68

[Close]

BLAST of CmaCh01G012550 vs. NCBI nr
Match: KAG7037451.1 (hypothetical protein SDJN02_01078 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 132.1 bits (331), Expect = 1.8e-27
Identity = 65/68 (95.59%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 1  MTGEEVAGPAGPKVLRLLYFAGAGFVFTIAMNKWREIEHKSLLQQRQKQRLDHQFAETPN 60
          MTGEEVAGPAGPKVLRLLYF GAGFVFTIAMNKWREIE KSLLQQRQKQRLDHQFAE+PN
Sbjct: 1  MTGEEVAGPAGPKVLRLLYFVGAGFVFTIAMNKWREIERKSLLQQRQKQRLDHQFAESPN 60

Query: 61 DAVQKVVK 69
          DAVQKVVK
Sbjct: 61 DAVQKVVK 68

[Close]

BLAST of CmaCh01G012550 vs. NCBI nr
Match: XP_023522224.1 (uncharacterized protein LOC111786101 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 132.1 bits (331), Expect = 1.8e-27
Identity = 65/68 (95.59%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 1  MTGEEVAGPAGPKVLRLLYFAGAGFVFTIAMNKWREIEHKSLLQQRQKQRLDHQFAETPN 60
          MTGEEVAGPAGPKVLRLLYFAGAGFVFTIAMNKWREIE KSLLQQ+QKQRLDHQFAE+PN
Sbjct: 1  MTGEEVAGPAGPKVLRLLYFAGAGFVFTIAMNKWREIERKSLLQQQQKQRLDHQFAESPN 60

Query: 61 DAVQKVVK 69
          DAVQKVVK
Sbjct: 61 DAVQKVVK 68

[Close]

BLAST of CmaCh01G012550 vs. NCBI nr
Match: XP_023522217.1 (uncharacterized protein LOC111786101 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 122.5 bits (306), Expect = 1.4e-24
Identity = 59/62 (95.16%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 1  MTGEEVAGPAGPKVLRLLYFAGAGFVFTIAMNKWREIEHKSLLQQRQKQRLDHQFAETPN 60
          MTGEEVAGPAGPKVLRLLYFAGAGFVFTIAMNKWREIE KSLLQQ+QKQRLDHQFAE+PN
Sbjct: 1  MTGEEVAGPAGPKVLRLLYFAGAGFVFTIAMNKWREIERKSLLQQQQKQRLDHQFAESPN 60

Query: 61 DA 63
          DA
Sbjct: 61 DA 62

[Close]

BLAST of CmaCh01G012550 vs. TAIR 10
Match: AT1G16916.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 67.8 bits (164), Expect = 3.9e-12
Identity = 31/61 (50.82%), Postives = 42/61 (68.85%), Query Frame = 0


Query: 8  GPAGPKVLRLLYFAGAGFVFTIAMNKWREIEHKSLLQQRQKQRLDHQFAETPNDAVQKVV 67
          GP  PK+LR++YF GAGF+ T A+NKWRE+E  SLL+Q Q++         P D+VQK +
Sbjct: 5  GPPAPKMLRMVYFVGAGFLCTFAINKWREMERNSLLKQEQEKNQQGDVGLLPRDSVQKAM 64

Query: 68 K 69
          K
Sbjct: 65 K 65

The following BLAST results are available for this feature:

BLAST of CmaCh01G012550 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh01G012550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IVQ6	1.2e-29	100.00	uncharacterized protein LOC111481043 OS=Cucurbita maxima OX=3661 GN=LOC111481043...	[more]
A0A6J1FMP5	1.0e-28	97.06	uncharacterized protein LOC111446806 OS=Cucurbita moschata OX=3662 GN=LOC1114468...	[more]
A0A6J1C1U1	6.5e-23	80.88	uncharacterized protein LOC111006563 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]
A0A0A0L208	3.2e-22	77.94	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G625040 PE=4 SV=1	[more]
A0A090ITT6	9.3e-22	76.47	Uncharacterized protein OS=Cucumis sativus OX=3659 PE=2 SV=1	[more]

BLAST of CmaCh01G012550 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022982102.1	2.5e-29	100.00	uncharacterized protein LOC111481043 [Cucurbita maxima]	[more]
XP_022941532.1	2.1e-28	97.06	uncharacterized protein LOC111446806 [Cucurbita moschata] >KAG6607933.1 hypothet...	[more]
KAG7037451.1	1.8e-27	95.59	hypothetical protein SDJN02_01078 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023522224.1	1.8e-27	95.59	uncharacterized protein LOC111786101 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_023522217.1	1.4e-24	95.16	uncharacterized protein LOC111786101 isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmaCh01G012550 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G16916.1	3.9e-12	50.82	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh01G012550.1	CmaCh01G012550.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane