CmaCh00G002760 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh00G002760
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionGlycosyltransferase family 28 protein
LocationCma_Chr00: 22522555 .. 22522848 (+)
RNA-Seq ExpressionCmaCh00G002760
SyntenyCmaCh00G002760
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAGAAGAATTGGGCGTATGGGACTGTGGCAGTCCATTATACGACTCCTACGAGCTCGCCTCCCTCGCCCATATCATCGACCGCCATCTCATGGCGTTTCCGCCGCCTTCTTACGGCGGATCACGGCGGTTCTTCTCCAACAAAGTCTCCCACTTTTCTGCCATCATGCCATCTCCGCCGCTGTCCACCTCCACTTTGAAAAAGAAGCCGGTGGGCGAAATGAAGAACAAGCTCAAGAAATTCAAAATCACTGTGAGTCTTCCTGCAATTCTTTTTTGGAAAAAGAAGTAA

mRNA sequence

ATGAGAGAAGAATTGGGCGTATGGGACTGTGGCAGTCCATTATACGACTCCTACGAGCTCGCCTCCCTCGCCCATATCATCGACCGCCATCTCATGGCGTTTCCGCCGCCTTCTTACGGCGGATCACGGCGGTTCTTCTCCAACAAAGTCTCCCACTTTTCTGCCATCATGCCATCTCCGCCGCTGTCCACCTCCACTTTGAAAAAGAAGCCGGTGGGCGAAATGAAGAACAAGCTCAAGAAATTCAAAATCACTGTGAGTCTTCCTGCAATTCTTTTTTGGAAAAAGAAGTAA

Coding sequence (CDS)

ATGAGAGAAGAATTGGGCGTATGGGACTGTGGCAGTCCATTATACGACTCCTACGAGCTCGCCTCCCTCGCCCATATCATCGACCGCCATCTCATGGCGTTTCCGCCGCCTTCTTACGGCGGATCACGGCGGTTCTTCTCCAACAAAGTCTCCCACTTTTCTGCCATCATGCCATCTCCGCCGCTGTCCACCTCCACTTTGAAAAAGAAGCCGGTGGGCGAAATGAAGAACAAGCTCAAGAAATTCAAAATCACTGTGAGTCTTCCTGCAATTCTTTTTTGGAAAAAGAAGTAA

Protein sequence

MREELGVWDCGSPLYDSYELASLAHIIDRHLMAFPPPSYGGSRRFFSNKVSHFSAIMPSPPLSTSTLKKKPVGEMKNKLKKFKITVSLPAILFWKKK
Homology
BLAST of CmaCh00G002760 vs. TAIR 10
Match: AT3G61660.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46375.1); Has 28 Blast hits to 28 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 57.8 bits (138), Expect = 5.7e-09
Identity = 22/29 (75.86%), Postives = 25/29 (86.21%), Query Frame = 0

Query: 7  VWDCGSPLYDSYELASLAHIIDRHLMAFP 36
          +WDCGSPLYDSYEL SL HII+RH M+ P
Sbjct: 9  LWDCGSPLYDSYELVSLTHIIERHFMSLP 37

BLAST of CmaCh00G002760 vs. TAIR 10
Match: AT2G46375.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G61660.1); Has 12 Blast hits to 12 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 50.4 bits (119), Expect = 9.2e-07
Identity = 20/30 (66.67%), Postives = 22/30 (73.33%), Query Frame = 0

Query: 7  VWDCGSPLYDSYELASLAHIIDRHLMAFPP 37
          +WDC S LYDSYEL S  HII+R LM F P
Sbjct: 23 IWDCDSTLYDSYELVSFVHIIERKLMPFSP 52

BLAST of CmaCh00G002760 vs. TAIR 10
Match: AT5G41810.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64340.1); Has 876 Blast hits to 690 proteins in 132 species: Archae - 0; Bacteria - 38; Metazoa - 180; Fungi - 112; Plants - 59; Viruses - 2; Other Eukaryotes - 485 (source: NCBI BLink). )

HSP 1 Score: 40.4 bits (93), Expect = 9.5e-04
Identity = 28/85 (32.94%), Postives = 42/85 (49.41%), Query Frame = 0

Query: 7   VWDCGSPLYDSYELASLAHIIDRHLMAFPPPSYGGS----RRF--FSNKVSHFSAIMPSP 66
           VWDCGS LYDS+EL S    +D  + A    +   S    RR    S+    +S  +P P
Sbjct: 122 VWDCGSTLYDSFELNSFKRQLDSAISASSARTMSMSHLPDRRIPSLSSLSPEYSPPLPPP 181

Query: 67  PLSTSTLK---KKPVGEMKNKLKKF 83
           P ++S+     KK   ++   L++F
Sbjct: 182 PTTSSSSSSGGKKHSNKISRSLQRF 206

BLAST of CmaCh00G002760 vs. TAIR 10
Match: AT5G41810.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64340.1); Has 514 Blast hits to 437 proteins in 98 species: Archae - 0; Bacteria - 21; Metazoa - 115; Fungi - 53; Plants - 52; Viruses - 5; Other Eukaryotes - 268 (source: NCBI BLink). )

HSP 1 Score: 40.4 bits (93), Expect = 9.5e-04
Identity = 28/85 (32.94%), Postives = 42/85 (49.41%), Query Frame = 0

Query: 7   VWDCGSPLYDSYELASLAHIIDRHLMAFPPPSYGGS----RRF--FSNKVSHFSAIMPSP 66
           VWDCGS LYDS+EL S    +D  + A    +   S    RR    S+    +S  +P P
Sbjct: 113 VWDCGSTLYDSFELNSFKRQLDSAISASSARTMSMSHLPDRRIPSLSSLSPEYSPPLPPP 172

Query: 67  PLSTSTLK---KKPVGEMKNKLKKF 83
           P ++S+     KK   ++   L++F
Sbjct: 173 PTTSSSSSSGGKKHSNKISRSLQRF 197

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
AT3G61660.15.7e-0975.86unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT2G46375.19.2e-0766.67unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G41810.19.5e-0432.94unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G41810.29.5e-0432.94unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33978:SF18OS01G0656300 PROTEINcoord: 3..96
NoneNo IPR availablePANTHERPTHR33978SERINE/THREONINE-KINASEcoord: 3..96

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh00G002760.1CmaCh00G002760.1mRNA