CmaCh00G000870 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh00G000870
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	NADH dehydrogenase subunit 9
Location	Cma_Chr00: 4297716 .. 4297937 (-)
RNA-Seq Expression	CmaCh00G000870
Synteny	CmaCh00G000870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGGTGTTTCTTCCATCAATCATCCGGATCTACGCCGTATATCAACAGATTATGGTTTCGAGGGGCATCCATTACGAAAAGACCTTCCTCTGAGTGGATATGTGGAAGTACGCTATGATGATCCAGAGAAATGTGTGGTTTCTAAACCCATTGAGATGACCCAAGAATTTCGCTATTTCGATTTTGCTAGTCCTTGGGAACAGCGTAGCGACGGATAA

mRNA sequence

ATGTTTGGTGTTTCTTCCATCAATCATCCGGATCTACGCCGTATATCAACAGATTATGGTTTCGAGGGGCATCCATTACGAAAAGACCTTCCTCTGAGTGGATATGTGGAAGTACGCTATGATGATCCAGAGAAATGTGTGGTTTCTAAACCCATTGAGATGACCCAAGAATTTCGCTATTTCGATTTTGCTAGTCCTTGGGAACAGCGTAGCGACGGATAA

Coding sequence (CDS)

ATGTTTGGTGTTTCTTCCATCAATCATCCGGATCTACGCCGTATATCAACAGATTATGGTTTCGAGGGGCATCCATTACGAAAAGACCTTCCTCTGAGTGGATATGTGGAAGTACGCTATGATGATCCAGAGAAATGTGTGGTTTCTAAACCCATTGAGATGACCCAAGAATTTCGCTATTTCGATTTTGCTAGTCCTTGGGAACAGCGTAGCGACGGATAA

Protein sequence

MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKCVVSKPIEMTQEFRYFDFASPWEQRSDG

Homology

[Close]

BLAST of CmaCh00G000870 vs. ExPASy Swiss-Prot
Match: Q35322 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=NAD9 PE=2 SV=2)

HSP 1 Score: 148.3 bits (373), Expect = 3.4e-35
Identity = 68/73 (93.15%), Postives = 69/73 (94.52%), Query Frame = 0


Query: 1   MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKCVVSKPIEMTQEFRY 60
           MFGVS INHPDLRRI TDYGFEGHPLRKD PLSGYVEVRYDDPEK VVS+PIEMTQEFRY
Sbjct: 118 MFGVSFINHPDLRRILTDYGFEGHPLRKDFPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 177

Query: 61  FDFASPWEQRSDG 74
           FDFASPWEQRSDG
Sbjct: 178 FDFASPWEQRSDG 190

[Close]

BLAST of CmaCh00G000870 vs. ExPASy Swiss-Prot
Match: P80261 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 OS=Solanum tuberosum OX=4113 GN=NAD9 PE=1 SV=3)

HSP 1 Score: 148.3 bits (373), Expect = 3.4e-35
Identity = 68/73 (93.15%), Postives = 69/73 (94.52%), Query Frame = 0


Query: 1   MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKCVVSKPIEMTQEFRY 60
           MFGV SINHPDLRRI TDYGFEGHPLRKD PLSGYVEVRYDDPEK VVS+PIEMTQEFRY
Sbjct: 118 MFGVFSINHPDLRRILTDYGFEGHPLRKDFPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 177

Query: 61  FDFASPWEQRSDG 74
           FDFASPWEQRSDG
Sbjct: 178 FDFASPWEQRSDG 190

[Close]

BLAST of CmaCh00G000870 vs. ExPASy Swiss-Prot
Match: Q95748 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 OS=Arabidopsis thaliana OX=3702 GN=NAD9 PE=1 SV=2)

HSP 1 Score: 147.1 bits (370), Expect = 7.6e-35
Identity = 67/73 (91.78%), Postives = 69/73 (94.52%), Query Frame = 0


Query: 1   MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKCVVSKPIEMTQEFRY 60
           MFGVS INHPDLRRI TDYGFEGHPLRKD PLSGYV+VRYDDPEK VVS+PIEMTQEFRY
Sbjct: 118 MFGVSFINHPDLRRILTDYGFEGHPLRKDFPLSGYVQVRYDDPEKRVVSEPIEMTQEFRY 177

Query: 61  FDFASPWEQRSDG 74
           FDFASPWEQRSDG
Sbjct: 178 FDFASPWEQRSDG 190

[Close]

BLAST of CmaCh00G000870 vs. ExPASy Swiss-Prot
Match: Q33994 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 OS=Beta trigyna OX=19769 GN=NAD9 PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.9e-33
Identity = 65/71 (91.55%), Postives = 67/71 (94.37%), Query Frame = 0


Query: 1   MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKCVVSKPIEMTQEFRY 60
           MFGVS INHPDLRRI TDYGFEGHPLRKD PLSGYVEVRYDDPEK VVS+PIEMTQEFRY
Sbjct: 118 MFGVSFINHPDLRRILTDYGFEGHPLRKDFPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 177

Query: 61  FDFASPWEQRS 72
           FDFASPWEQR+
Sbjct: 178 FDFASPWEQRN 188

[Close]

BLAST of CmaCh00G000870 vs. ExPASy Swiss-Prot
Match: Q37787 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 OS=Beta vulgaris OX=161934 GN=NAD9 PE=2 SV=3)

HSP 1 Score: 142.5 bits (358), Expect = 1.9e-33
Identity = 65/71 (91.55%), Postives = 67/71 (94.37%), Query Frame = 0


Query: 1   MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKCVVSKPIEMTQEFRY 60
           MFGVS INHPDLRRI TDYGFEGHPLRKD PLSGYVEVRYDDPEK VVS+PIEMTQEFRY
Sbjct: 118 MFGVSFINHPDLRRILTDYGFEGHPLRKDFPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 177

Query: 61  FDFASPWEQRS 72
           FDFASPWEQR+
Sbjct: 178 FDFASPWEQRN 188

[Close]

BLAST of CmaCh00G000870 vs. ExPASy TrEMBL
Match: S4SJL9 (NADH dehydrogenase subunit 9 OS=Gossypium hirsutum OX=3635 GN=nad9 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.8e-34
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 0


Query: 1   MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKCVVSKPIEMTQEFRY 60
           MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEK VVS+PIEMTQEFRY
Sbjct: 118 MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 177

Query: 61  FDFASPWEQRSDG 74
           FDFASPWEQRSDG
Sbjct: 178 FDFASPWEQRSDG 190

[Close]

BLAST of CmaCh00G000870 vs. ExPASy TrEMBL
Match: E9KZM7 (NADH dehydrogenase subunit 9 OS=Vigna radiata var. radiata OX=3916 GN=nad9 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.8e-34
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 0


Query: 1   MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKCVVSKPIEMTQEFRY 60
           MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEK VVS+PIEMTQEFRY
Sbjct: 118 MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 177

Query: 61  FDFASPWEQRSDG 74
           FDFASPWEQRSDG
Sbjct: 178 FDFASPWEQRSDG 190

[Close]

BLAST of CmaCh00G000870 vs. ExPASy TrEMBL
Match: A0A290WKX8 (NADH dehydrogenase subunit 9 OS=Solanum lycopersicum OX=4081 GN=nad9 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.8e-34
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 0


Query: 1   MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKCVVSKPIEMTQEFRY 60
           MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEK VVS+PIEMTQEFRY
Sbjct: 118 MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 177

Query: 61  FDFASPWEQRSDG 74
           FDFASPWEQRSDG
Sbjct: 178 FDFASPWEQRSDG 190

[Close]

BLAST of CmaCh00G000870 vs. ExPASy TrEMBL
Match: A0A7S9H4K9 (NADH dehydrogenase subunit 9 OS=Solanum stenotomum subsp. goniocalyx OX=1050191 GN=nad9 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.8e-34
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 0


Query: 1   MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKCVVSKPIEMTQEFRY 60
           MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEK VVS+PIEMTQEFRY
Sbjct: 118 MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 177

Query: 61  FDFASPWEQRSDG 74
           FDFASPWEQRSDG
Sbjct: 178 FDFASPWEQRSDG 190

[Close]

BLAST of CmaCh00G000870 vs. ExPASy TrEMBL
Match: A0A6C0M9C6 (NADH dehydrogenase subunit 9 OS=Pediomelum tenuiflorum OX=247917 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.8e-34
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 0


Query: 1   MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKCVVSKPIEMTQEFRY 60
           MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEK VVS+PIEMTQEFRY
Sbjct: 118 MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 177

Query: 61  FDFASPWEQRSDG 74
           FDFASPWEQRSDG
Sbjct: 178 FDFASPWEQRSDG 190

[Close]

BLAST of CmaCh00G000870 vs. NCBI nr
Match: QKE23408.1 (NADH dehydrogenase subunit 9 [Caryopteris trichosphaera] >QKE23462.1 NADH dehydrogenase subunit 9 [Caryopteris mongholica])

HSP 1 Score: 154.5 bits (389), Expect = 3.6e-34
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 0


Query: 1   MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKCVVSKPIEMTQEFRY 60
           MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEK VVS+PIEMTQEFRY
Sbjct: 118 MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 177

Query: 61  FDFASPWEQRSDG 74
           FDFASPWEQRSDG
Sbjct: 178 FDFASPWEQRSDG 190

[Close]

BLAST of CmaCh00G000870 vs. NCBI nr
Match: EEF27025.1 (NADH-ubiquinone oxidoreductase mitochondrial precursor, putative [Ricinus communis])

HSP 1 Score: 154.5 bits (389), Expect = 3.6e-34
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 0


Query: 1   MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKCVVSKPIEMTQEFRY 60
           MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEK VVS+PIEMTQEFRY
Sbjct: 97  MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 156

Query: 61  FDFASPWEQRSDG 74
           FDFASPWEQRSDG
Sbjct: 157 FDFASPWEQRSDG 169

[Close]

BLAST of CmaCh00G000870 vs. NCBI nr
Match: AKZ24901.1 (NADH dehydrogenase subunit 9 [Androsace occidentalis])

HSP 1 Score: 154.5 bits (389), Expect = 3.6e-34
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 0


Query: 1   MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKCVVSKPIEMTQEFRY 60
           MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEK VVS+PIEMTQEFRY
Sbjct: 118 MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 177

Query: 61  FDFASPWEQRSDG 74
           FDFASPWEQRSDG
Sbjct: 178 FDFASPWEQRSDG 190

[Close]

BLAST of CmaCh00G000870 vs. NCBI nr
Match: YP_009737743.1 (NADH dehydrogenase subunit 9 [Ammopiptanthus nanus] >QCQ81887.1 NADH dehydrogenase subunit 9 [Ammopiptanthus mongolicus] >QHW07238.1 NADH dehydrogenase subunit 9 [Ammopiptanthus nanus])

HSP 1 Score: 154.5 bits (389), Expect = 3.6e-34
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 0


Query: 1   MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKCVVSKPIEMTQEFRY 60
           MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEK VVS+PIEMTQEFRY
Sbjct: 118 MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 177

Query: 61  FDFASPWEQRSDG 74
           FDFASPWEQRSDG
Sbjct: 178 FDFASPWEQRSDG 190

[Close]

BLAST of CmaCh00G000870 vs. NCBI nr
Match: YP_009049763.1 (NADH dehydrogenase subunit 9 [Capsicum annuum] >YP_009241447.1 NADH dehydrogenase subunit 9 [Nicotiana sylvestris] >YP_009430337.1 NADH dehydrogenase subunit 9 [Nicotiana attenuata] >YP_009919592.1 NADH dehydrogenase subunit 9 [Solanum melongena] >YP_009919633.1 NADH dehydrogenase subunit 9 [Solanum aethiopicum] >YP_009919702.1 NADH dehydrogenase subunit 9 [Solanum torvum] >YP_173479.1 NADH dehydrogenase subunit 9 [Nicotiana tabacum] >XP_033508862.1 NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 [Nicotiana tomentosiformis] >AJM70208.1 NADH dehydrogenase subunit 9 [Nicotiana tabacum/Hyoscyamus niger cybrid] >AKZ24880.1 NADH dehydrogenase subunit 9 [Solanum carolinense] >AKZ24881.1 NADH dehydrogenase subunit 9 [Solanum rostratum] >AKZ24882.1 NADH dehydrogenase subunit 9 [Solanum triflorum] >QFV19610.1 NADH dehydrogenase subunit 9 [Capsicum annuum var. glabriusculum] >QMQ97480.1 NADH dehydrogenase subunit 9 [Solanum wrightii] >QMQ97631.1 NADH dehydrogenase subunit 9 [Solanum sisymbriifolium] >QMQ98093.1 NADH dehydrogenase subunit 9 [Solanum anguivi])

HSP 1 Score: 154.5 bits (389), Expect = 3.6e-34
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 0


Query: 1   MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKCVVSKPIEMTQEFRY 60
           MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEK VVS+PIEMTQEFRY
Sbjct: 118 MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 177

Query: 61  FDFASPWEQRSDG 74
           FDFASPWEQRSDG
Sbjct: 178 FDFASPWEQRSDG 190

[Close]

BLAST of CmaCh00G000870 vs. TAIR 10
Match: ATMG00070.1 (NADH dehydrogenase subunit 9 )

HSP 1 Score: 151.0 bits (380), Expect = 3.7e-37
Identity = 69/73 (94.52%), Postives = 71/73 (97.26%), Query Frame = 0


Query: 1   MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKCVVSKPIEMTQEFRY 60
           MFGVS INHPDLRRISTDYGFEGHPLRKDLPLSGYV+VRYDDPEK VVS+PIEMTQEFRY
Sbjct: 118 MFGVSFINHPDLRRISTDYGFEGHPLRKDLPLSGYVQVRYDDPEKRVVSEPIEMTQEFRY 177

Query: 61  FDFASPWEQRSDG 74
           FDFASPWEQRSDG
Sbjct: 178 FDFASPWEQRSDG 190

The following BLAST results are available for this feature:

BLAST of CmaCh00G000870 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q35322	3.4e-35	93.15	NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 OS=Oryza sativa subsp. jap...	[more]
P80261	3.4e-35	93.15	NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 OS=Solanum tuberosum OX=41...	[more]
Q95748	7.6e-35	91.78	NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 OS=Arabidopsis thaliana OX...	[more]
Q33994	1.9e-33	91.55	NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 OS=Beta trigyna OX=19769 G...	[more]
Q37787	1.9e-33	91.55	NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 OS=Beta vulgaris OX=161934...	[more]

BLAST of CmaCh00G000870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
S4SJL9	1.8e-34	97.26	NADH dehydrogenase subunit 9 OS=Gossypium hirsutum OX=3635 GN=nad9 PE=3 SV=1	[more]
E9KZM7	1.8e-34	97.26	NADH dehydrogenase subunit 9 OS=Vigna radiata var. radiata OX=3916 GN=nad9 PE=3 ...	[more]
A0A290WKX8	1.8e-34	97.26	NADH dehydrogenase subunit 9 OS=Solanum lycopersicum OX=4081 GN=nad9 PE=3 SV=1	[more]
A0A7S9H4K9	1.8e-34	97.26	NADH dehydrogenase subunit 9 OS=Solanum stenotomum subsp. goniocalyx OX=1050191 ...	[more]
A0A6C0M9C6	1.8e-34	97.26	NADH dehydrogenase subunit 9 OS=Pediomelum tenuiflorum OX=247917 PE=3 SV=1	[more]

BLAST of CmaCh00G000870 vs. NCBI nr


Match Name	E-value	Identity	Description
QKE23408.1	3.6e-34	97.26	NADH dehydrogenase subunit 9 [Caryopteris trichosphaera] >QKE23462.1 NADH dehydr...	[more]
EEF27025.1	3.6e-34	97.26	NADH-ubiquinone oxidoreductase mitochondrial precursor, putative [Ricinus commun...	[more]
AKZ24901.1	3.6e-34	97.26	NADH dehydrogenase subunit 9 [Androsace occidentalis]	[more]
YP_009737743.1	3.6e-34	97.26	NADH dehydrogenase subunit 9 [Ammopiptanthus nanus] >QCQ81887.1 NADH dehydrogena...	[more]
YP_009049763.1	3.6e-34	97.26	NADH dehydrogenase subunit 9 [Capsicum annuum] >YP_009241447.1 NADH dehydrogenas...	[more]

BLAST of CmaCh00G000870 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00070.1	3.7e-37	94.52	NADH dehydrogenase subunit 9	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001268	NADH:ubiquinone oxidoreductase, 30kDa subunit	PFAM	PF00329	Complex1_30kDa	coord: 1..35 e-value: 4.0E-11 score: 43.6
None	No IPR available	PANTHER	PTHR10884	NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 3	coord: 1..71
IPR037232	NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily	SUPERFAMILY	143243	Nqo5-like	coord: 1..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh00G000870.1	CmaCh00G000870.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0005747	mitochondrial respiratory chain complex I
cellular_component	GO:0009579	thylakoid
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity