CmoCh19G006430.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh19G006430.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Embryo defective
Location	Cmo_Chr19: 6952088 .. 6954959 (-)
Sequence length	527
RNA-Seq Expression	CmoCh19G006430.1
Synteny	CmoCh19G006430.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCAGAATTTTTCAGAATTTGTGGCGGTTTATGGTGTCCGTGGACAAACCCTCCTTCCAAAACTGTGTGTTCATCCATCAACAGCTTTCAATTGAGGCGCAGCGATGGCGACGCACCTTCAAAGTTCCACTAAAATGGCCCTTCACGCCCCGGTTCTTCTAGCGCTTAGGGTAAGCTTGACGAGCCTTTATTCTCTTTCTCTTTATGAAGTATTTTCTGTGAAGCCTGAGTCAGTGGGTGGGATTATTAGAGCTCTGTTTCTAGCTTTCAAGAATGCATTTGTTTTGTTTCTCATTGTAGATTAAGCTAATTGGTGTTTGATTGAATTGGTGGAAGAATCTTGATACAAATTTGTGGGTGATGGTGATTGGAAAGTCCATAGCTCGTGCAGTGTTTACATTTCTGTGATGAATTTGCGTTTTGTTTTAAGGGATTTTCTACACCTCTAGTTGACTGTCGAACGGGCTTGAGGCCATTTACTTACCTTGTTGTGTTGAGGATTATTGGGAGAGGAGTCCTACGTCGGGTAATTAAAAGAGGTTGATCATGGGTTTATAAGTAAAGAAATATATCTCCATTGGTATGGAAACCAAAAGCAAACCCATGAGAGCTTATGTTTAAAGTGGATAATGTCATATCATTGTGGAGAGTCGGGCACTTAACTTAACCATGTCAATAGAATCCTCAAATGTCGAACAAAGAAGTTGTGAGCCTTGAGGGTGTAGTCAAAAGTGACTCAAGTGTCGAATAAAGGGCGTGCTTTGTTCGAGGGCTCTTTAGAAGGAGTCGAGCCTCGATTAAAGGGAGGCTGTTCGAGAGCTCCATAGGCCTCAAGGGAGGCTATATGGTGTGTTTTGTTTGAGGGGAGGATCGTTGAGGATTGTTGGGAGGGAGTCCTACATTGGCTAATTAAGGGGATGATCATGGGTTTATAAGTAAGGAAAGCATCTCCATTGGTATGAGGCCTTCTGGGAAATCCAAAAGCAAAGCCATGAGTGCTTTTAACTTAACCATGTCAATAGAATCCTTAAGTTTCGAACAAAGAAGTTGTGAGCCTCGATTAAGGGTGTATTTTGTTCGAGGGCTCCTGAGAAGTAGTCGAGCCTTGATTAAGGGAGGCTATTCGAGGATTCCATAGGCTTCAGGGCAGGCTCTATGGTGTGCTTTGTTCGAGGGGACTCGGCCTCCTCACTGGCACATCGCCTGGTGTCTGACTCTGATACCATTTGTAATGGCCCAAACTCACTTCTAGCCGATAGTGGCCTCTTTGGCCTTTCCCTTCCAAACTTCCTCTCAAAGTTTTTAAGACGCGTTTGCTAGGGAGAGGTTTCCATACCCTTATAAGAATGTTTCGTTATGCTCCCTAACCAATGTGGGATCTCACAATCCAATCCCCTTCGAGGCCAGCGTTCTTGCTGACATACCGCCTCATGTCCACTCCTCTTCGAGACTTAACTTCCTTGCTTGCACATCGCCCGATTTCTAACTCTAATACCATTTGTAACGGCCCAAACCTACCGCTAGCAGATATTGTCTTTTTTGGGCTTTCCCTTTCGAGCTTCGCCTCAAAGTTTTTAAAACGCGCATGCTAGGGAGAGGTTTCCACATCCTTATAAAGAATGTTTCTTTCTCCTCCCTAACTGATGTGGGATCTCACAGACCAAGCATTAATCTTCATTATTGCATCAAAGCTTCAACAAAAACGACATAAATGATATTCGCAAGGATTGTTTGAACACGGTTTATTAGTCTTCCTAGTTTTCGACAATCTACATCGTCTATGAGGCAACATTTTCGTCTCCGACGCCTTAAACTATAGCGTTAAACTTCATTAATGATCTATGTGGGACATTCAGCAGGTTTCTTGAGGCATTGTCTTATTAGTCATGGATGAAATCCTCAGTAGTTCTTTCTTTGCTATCCACCATTTTCCTTTTTCTAGGATCTAGAAGTGCCATGGCATTTGATCACCATTGCAATGTTCTTCGCCCTCGTTAAACTGCCCGGCCCGAACTATCCATATTGGGGTCGGATATTCATACCGCATTTTACTAATGGGGGTTTGTTTCGAACTCTATGGTCTCCGTTTCTCTGGTTTCGAAGACCTCGAAAGACATCGACGTTGCGGAAGCGTAACGAGAAGGCGTAGAGAACATTGGACCAAGTATTACTTTACTACTAGCAATCGACTCGATGCTTTTTAGTATCTAATTTCATTTTGATACGCCATGTGTGTAATTATGGCTCGGGTGCCTCGTTAAGAGGTCGAACTCGAGAGTAGCTTTGTTATAGGATTGCTATTGGATGTTGTTAGGGGGAGAAAGGGTAAAGTTAGGAGTCGATTTAGTTGGCTTAGGCTCGAGTGATCTCAAGAACGGTAGAGTCCAAGTACCACGAATTATTTGGCTTCTCTTGTAGTTCTTTACTTCTTATATTTTGAGTTTGATGACATATAGAGGTCGGGGATTCAAACCTCTGACCTCTTGACTGAAAGTATATCCCTTGACCAGTTGAGCTTAGCTCGAGTGGCATATGTCGATATCATCTTAGTTCTATCTGGTTCTCATCTCTCGTGTTGGTAGCAGGGTAACTTATGGACTTGTTTTCGATCAATTATCCTTGTTTTTGTGCAGATTACATTGCAGGCTTCATCAAAATGAAGTGTTCGATCGAGCGGGTGAACTGGTCGATAGGTTCTTATAGCACGAGACGGATTATGCTTCGGTGATGGACCTCCGAGATAAGCATTAAATGAAGTCTAAAAAAATTGTGTATGTTCGAGAACAATCAAAATTTTCAAAATCATGTCACCATAATTCATATTACCAAATTACCCCCAAAATAATGTTGAATATCCCTATCGATTCCGTCT

mRNA sequence

CCCAGAATTTTTCAGAATTTGTGGCGGTTTATGGTGTCCGTGGACAAACCCTCCTTCCAAAACTGTGTGTTCATCCATCAACAGCTTTCAATTGAGGCGCAGCGATGGCGACGCACCTTCAAAGTTCCACTAAAATGGCCCTTCACGCCCCGGTTCTTCTAGCGCTTAGGGATCTAGAAGTGCCATGGCATTTGATCACCATTGCAATGTTCTTCGCCCTCGTTAAACTGCCCGGCCCGAACTATCCATATTGGGGTCGGATATTCATACCGCATTTTACTAATGGGGATTACATTGCAGGCTTCATCAAAATGAAGTGTTCGATCGAGCGGGTGAACTGGTCGATAGGTTCTTATAGCACGAGACGGATTATGCTTCGGTGATGGACCTCCGAGATAAGCATTAAATGAAGTCTAAAAAAATTGTGTATGTTCGAGAACAATCAAAATTTTCAAAATCATGTCACCATAATTCATATTACCAAATTACCCCCAAAATAATGTTGAATATCCCTATCGATTCCGTCT

Coding sequence (CDS)

ATGGCGACGCACCTTCAAAGTTCCACTAAAATGGCCCTTCACGCCCCGGTTCTTCTAGCGCTTAGGGATCTAGAAGTGCCATGGCATTTGATCACCATTGCAATGTTCTTCGCCCTCGTTAAACTGCCCGGCCCGAACTATCCATATTGGGGTCGGATATTCATACCGCATTTTACTAATGGGGATTACATTGCAGGCTTCATCAAAATGAAGTGTTCGATCGAGCGGGTGAACTGGTCGATAGGTTCTTATAGCACGAGACGGATTATGCTTCGGTGA

Protein sequence

MATHLQSSTKMALHAPVLLALRDLEVPWHLITIAMFFALVKLPGPNYPYWGRIFIPHFTNGDYIAGFIKMKCSIERVNWSIGSYSTRRIMLR

Homology

[Close]

BLAST of CmoCh19G006430.1 vs. ExPASy TrEMBL
Match: A0A5A7SM40 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G00260 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 5.5e-17
Identity = 41/51 (80.39%), Postives = 46/51 (90.20%), Query Frame = 0


Query: 21  LRDLEVPWHLITIAMFFALVKLPGPNYPYWGRIFIPHFTNGDYIAGFIKMK 72
           L+DLEVPWHLITIA+FF L+KLPGP +PYWGRIFIPH  NGD IAGFI+MK
Sbjct: 110 LKDLEVPWHLITIAIFFTLIKLPGPYFPYWGRIFIPHLANGDDIAGFIRMK 160

[Close]

BLAST of CmoCh19G006430.1 vs. ExPASy TrEMBL
Match: A0A6J1C7B2 (uncharacterized protein LOC111008035 OS=Momordica charantia OX=3673 GN=LOC111008035 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.7e-13
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 21  LRDLEVPWHLITIAMFFALVKLPGPNYPYWGRIFIPHFTNG 62
           L+DLEVPWHLITIA+FF L+KLPGP YPYWGRIFIPHF NG
Sbjct: 162 LKDLEVPWHLITIAIFFTLIKLPGPYYPYWGRIFIPHFANG 202

[Close]

BLAST of CmoCh19G006430.1 vs. ExPASy TrEMBL
Match: A0A6J1EIP9 (uncharacterized protein LOC111434507 OS=Cucurbita moschata OX=3662 GN=LOC111434507 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.7e-13
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 21  LRDLEVPWHLITIAMFFALVKLPGPNYPYWGRIFIPHFTNG 62
           L+DLEVPWHLITIA+FF LVKLPGP YPYWGRIF+PHF NG
Sbjct: 161 LKDLEVPWHLITIALFFTLVKLPGPYYPYWGRIFLPHFANG 201

[Close]

BLAST of CmoCh19G006430.1 vs. ExPASy TrEMBL
Match: A0A6J1JED8 (uncharacterized protein LOC111486136 OS=Cucurbita maxima OX=3661 GN=LOC111486136 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 2.2e-13
Identity = 34/41 (82.93%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 21  LRDLEVPWHLITIAMFFALVKLPGPNYPYWGRIFIPHFTNG 62
           L+DLEVPWHLITIA+FF L+KLPGP YPYWGRIF+PHF NG
Sbjct: 161 LKDLEVPWHLITIALFFTLIKLPGPYYPYWGRIFLPHFANG 201

[Close]

BLAST of CmoCh19G006430.1 vs. ExPASy TrEMBL
Match: A0A0A0K6P0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G074900 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.8e-13
Identity = 34/44 (77.27%), Postives = 39/44 (88.64%), Query Frame = 0


Query: 21  LRDLEVPWHLITIAMFFALVKLPGPNYPYWGRIFIPHFTNGDYI 65
           L+DLEVPWHLITIA+FF L+KLPGP+YPYWGRIFIPH  NG  +
Sbjct: 168 LKDLEVPWHLITIAIFFTLIKLPGPSYPYWGRIFIPHLANGGLV 211

[Close]

BLAST of CmoCh19G006430.1 vs. NCBI nr
Match: KAA0031273.1 (uncharacterized protein E6C27_scaffold139G00260 [Cucumis melo var. makuwa] >TYK06725.1 uncharacterized protein E5676_scaffold13G00260 [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 1.1e-16
Identity = 41/51 (80.39%), Postives = 46/51 (90.20%), Query Frame = 0


Query: 21  LRDLEVPWHLITIAMFFALVKLPGPNYPYWGRIFIPHFTNGDYIAGFIKMK 72
           L+DLEVPWHLITIA+FF L+KLPGP +PYWGRIFIPH  NGD IAGFI+MK
Sbjct: 110 LKDLEVPWHLITIAIFFTLIKLPGPYFPYWGRIFIPHLANGDDIAGFIRMK 160

[Close]

BLAST of CmoCh19G006430.1 vs. NCBI nr
Match: KAG6571997.1 (hypothetical protein SDJN03_28725, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011674.1 hypothetical protein SDJN02_26580 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 90.1 bits (222), Expect = 1.1e-14
Identity = 56/93 (60.22%), Postives = 60/93 (64.52%), Query Frame = 0


Query: 1  MATHLQSSTKMALHAPVLLALRDLEVPWHLITIAMFFALVKLPGPNYPY-WGRIFIPHFT 60
          MATHLQSSTKMALHAPVLLALR            +F +LV     +      +       
Sbjct: 1  MATHLQSSTKMALHAPVLLALR------------VFVSLVSKTSKDIDVAEAQQEGVENI 60

Query: 61 NGDYIAGFIKMKCSIERVNWSIGSYSTRRIMLR 93
            DYIAGFIKMKCSIERVNWSIGSYSTRRIMLR
Sbjct: 61 GPDYIAGFIKMKCSIERVNWSIGSYSTRRIMLR 81

[Close]

BLAST of CmoCh19G006430.1 vs. NCBI nr
Match: XP_038889064.1 (uncharacterized protein LOC120078811 [Benincasa hispida])

HSP 1 Score: 87.4 bits (215), Expect = 6.9e-14
Identity = 37/47 (78.72%), Postives = 40/47 (85.11%), Query Frame = 0


Query: 21  LRDLEVPWHLITIAMFFALVKLPGPNYPYWGRIFIPHFTNGDYIAGF 68
           L+DLEVPWHLITIA+FF L+KLPGP YPYWGRIFIPHFTNG     F
Sbjct: 168 LKDLEVPWHLITIAIFFTLIKLPGPYYPYWGRIFIPHFTNGGLFRTF 214

[Close]

BLAST of CmoCh19G006430.1 vs. NCBI nr
Match: XP_022136318.1 (uncharacterized protein LOC111008035 [Momordica charantia])

HSP 1 Score: 85.1 bits (209), Expect = 3.4e-13
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 21  LRDLEVPWHLITIAMFFALVKLPGPNYPYWGRIFIPHFTNG 62
           L+DLEVPWHLITIA+FF L+KLPGP YPYWGRIFIPHF NG
Sbjct: 162 LKDLEVPWHLITIAIFFTLIKLPGPYYPYWGRIFIPHFANG 202

[Close]

BLAST of CmoCh19G006430.1 vs. NCBI nr
Match: XP_022927689.1 (uncharacterized protein LOC111434507 [Cucurbita moschata])

HSP 1 Score: 85.1 bits (209), Expect = 3.4e-13
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 21  LRDLEVPWHLITIAMFFALVKLPGPNYPYWGRIFIPHFTNG 62
           L+DLEVPWHLITIA+FF LVKLPGP YPYWGRIF+PHF NG
Sbjct: 161 LKDLEVPWHLITIALFFTLVKLPGPYYPYWGRIFLPHFANG 201

[Close]

BLAST of CmoCh19G006430.1 vs. TAIR 10
Match: AT1G49510.1 (embryo defective 1273 )

HSP 1 Score: 74.7 bits (182), Expect = 4.3e-14
Identity = 28/41 (68.29%), Postives = 34/41 (82.93%), Query Frame = 0


Query: 21  LRDLEVPWHLITIAMFFALVKLPGPNYPYWGRIFIPHFTNG 62
           L++ EVPWHLI + MFF L+KLPGP YPYWGR+ +PHF NG
Sbjct: 168 LKEAEVPWHLIAMMMFFTLIKLPGPYYPYWGRLLVPHFANG 208

The following BLAST results are available for this feature:

BLAST of CmoCh19G006430.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh19G006430.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SM40	5.5e-17	80.39	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1C7B2	1.7e-13	85.37	uncharacterized protein LOC111008035 OS=Momordica charantia OX=3673 GN=LOC111008...	[more]
A0A6J1EIP9	1.7e-13	85.37	uncharacterized protein LOC111434507 OS=Cucurbita moschata OX=3662 GN=LOC1114345...	[more]
A0A6J1JED8	2.2e-13	82.93	uncharacterized protein LOC111486136 OS=Cucurbita maxima OX=3661 GN=LOC111486136...	[more]
A0A0A0K6P0	2.8e-13	77.27	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G074900 PE=4 SV=1	[more]

BLAST of CmoCh19G006430.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0031273.1	1.1e-16	80.39	uncharacterized protein E6C27_scaffold139G00260 [Cucumis melo var. makuwa] >TYK0...	[more]
KAG6571997.1	1.1e-14	60.22	hypothetical protein SDJN03_28725, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038889064.1	6.9e-14	78.72	uncharacterized protein LOC120078811 [Benincasa hispida]	[more]
XP_022136318.1	3.4e-13	85.37	uncharacterized protein LOC111008035 [Momordica charantia]	[more]
XP_022927689.1	3.4e-13	85.37	uncharacterized protein LOC111434507 [Cucurbita moschata]	[more]

BLAST of CmoCh19G006430.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G49510.1	4.3e-14	68.29	embryo defective 1273	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36000	DEFECTIVE 1273 PROTEIN, PUTATIVE-RELATED	coord: 20..64
None	No IPR available	PANTHER	PTHR36000:SF2	DEFECTIVE 1273 PROTEIN, PUTATIVE-RELATED	coord: 20..64

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh19G006430	CmoCh19G006430	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh19G006430.1:exon:2621	CmoCh19G006430.1:exon:2621	exon
CmoCh19G006430.1:exon:2620	CmoCh19G006430.1:exon:2620	exon
CmoCh19G006430.1:exon:2619	CmoCh19G006430.1:exon:2619	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh19G006430.1:three_prime_utr	CmoCh19G006430.1:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh19G006430.1:cds	CmoCh19G006430.1:cds_3	CDS
CmoCh19G006430.1:cds	CmoCh19G006430.1:cds_2	CDS
CmoCh19G006430.1:cds	CmoCh19G006430.1:cds	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh19G006430.1:five_prime_utr	CmoCh19G006430.1:five_prime_utr	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh19G006430.1	CmoCh19G006430.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071472	cellular response to salt stress
biological_process	GO:0009658	chloroplast organization
cellular_component	GO:0016021	integral component of membrane