CmoCh19G003130 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh19G003130
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Nuclear transcription factor Y subunit C
Location	Cmo_Chr19: 2356529 .. 2357275 (-)
RNA-Seq Expression	CmoCh19G003130
Synteny	CmoCh19G003130

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCAATCAGAGCGTTCACAGCATCAGCAACAATCACAGCAGCCTGCAGGCGGTGTGGGCGGTGCGGGCGGTGCAGGCACATATTCTAATCCTTACCAAACAGCTCCGTTGGTGGCTTCCGGAACACCCGCCATTACAGTTCCCCCAACTCAGCTTGCCTTTCAGCAGGCTCAGCACTTCCACCACCACCAGCAACAACAGCACCAAATGTTTTGGGCAAACCAAATGCAAGAGATTGAACAAACAACTGACTTCAAGAACCATAGTCTCCCCCTTGCTCGAATCAAGAAGATAATGAAAGCGGATGAAGACGTTCGAATGATTTCAGCTGAAGCACCCGTTGTATTCGCAAAGGCGTGTGAAATGTTCATCTTGGAATTGACTCTACGATCCTGGATTCATACAGAAGAGAACAAAAGGAGAACTTTACAGAAGAACGATATCGCAGCTGCAATTTCGAGGACCGATGTCTTCGATTTCTTGGTTGATATTATTCCTAGAGACGAACTGAAAGAGGAAGGCCTCGGAATCACTAAAGCCTCTATTCCTGTAGTTGGTTCCCCAGCTGATATTCCTTATTACTATGTTCCCTCGCAGCATCCAGTTGGTGCGACGGGGATGATCATGGGGAAGCAATTGGATCAAGCGAATGTGTACGGTGCCACTGCTCAACAGCCACGACCACCTATGCCGTTCATGCCATGGCCGCACACTCAACCTCAGCAGCAGCAGCAGCAGCAATGA

mRNA sequence

ATGGATCAATCAGAGCGTTCACAGCATCAGCAACAATCACAGCAGCCTGCAGGCGGTGTGGGCGGTGCGGGCGGTGCAGGCACATATTCTAATCCTTACCAAACAGCTCCGTTGGTGGCTTCCGGAACACCCGCCATTACAGTTCCCCCAACTCAGCTTGCCTTTCAGCAGGCTCAGCACTTCCACCACCACCAGCAACAACAGCACCAAATGTTTTGGGCAAACCAAATGCAAGAGATTGAACAAACAACTGACTTCAAGAACCATAGTCTCCCCCTTGCTCGAATCAAGAAGATAATGAAAGCGGATGAAGACGTTCGAATGATTTCAGCTGAAGCACCCGTTGTATTCGCAAAGGCGTGTGAAATGTTCATCTTGGAATTGACTCTACGATCCTGGATTCATACAGAAGAGAACAAAAGGAGAACTTTACAGAAGAACGATATCGCAGCTGCAATTTCGAGGACCGATGTCTTCGATTTCTTGGTTGATATTATTCCTAGAGACGAACTGAAAGAGGAAGGCCTCGGAATCACTAAAGCCTCTATTCCTGTAGTTGGTTCCCCAGCTGATATTCCTTATTACTATGTTCCCTCGCAGCATCCAGTTGGTGCGACGGGGATGATCATGGGGAAGCAATTGGATCAAGCGAATGTGTACGGTGCCACTGCTCAACAGCCACGACCACCTATGCCGTTCATGCCATGGCCGCACACTCAACCTCAGCAGCAGCAGCAGCAGCAATGA

Coding sequence (CDS)

ATGGATCAATCAGAGCGTTCACAGCATCAGCAACAATCACAGCAGCCTGCAGGCGGTGTGGGCGGTGCGGGCGGTGCAGGCACATATTCTAATCCTTACCAAACAGCTCCGTTGGTGGCTTCCGGAACACCCGCCATTACAGTTCCCCCAACTCAGCTTGCCTTTCAGCAGGCTCAGCACTTCCACCACCACCAGCAACAACAGCACCAAATGTTTTGGGCAAACCAAATGCAAGAGATTGAACAAACAACTGACTTCAAGAACCATAGTCTCCCCCTTGCTCGAATCAAGAAGATAATGAAAGCGGATGAAGACGTTCGAATGATTTCAGCTGAAGCACCCGTTGTATTCGCAAAGGCGTGTGAAATGTTCATCTTGGAATTGACTCTACGATCCTGGATTCATACAGAAGAGAACAAAAGGAGAACTTTACAGAAGAACGATATCGCAGCTGCAATTTCGAGGACCGATGTCTTCGATTTCTTGGTTGATATTATTCCTAGAGACGAACTGAAAGAGGAAGGCCTCGGAATCACTAAAGCCTCTATTCCTGTAGTTGGTTCCCCAGCTGATATTCCTTATTACTATGTTCCCTCGCAGCATCCAGTTGGTGCGACGGGGATGATCATGGGGAAGCAATTGGATCAAGCGAATGTGTACGGTGCCACTGCTCAACAGCCACGACCACCTATGCCGTTCATGCCATGGCCGCACACTCAACCTCAGCAGCAGCAGCAGCAGCAATGA

Protein sequence

MDQSERSQHQQQSQQPAGGVGGAGGAGTYSNPYQTAPLVASGTPAITVPPTQLAFQQAQHFHHHQQQQHQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGITKASIPVVGSPADIPYYYVPSQHPVGATGMIMGKQLDQANVYGATAQQPRPPMPFMPWPHTQPQQQQQQQ

Homology

[Close]

BLAST of CmoCh19G003130 vs. ExPASy Swiss-Prot
Match: Q8LCG7 (Nuclear transcription factor Y subunit C-2 OS=Arabidopsis thaliana OX=3702 GN=NFYC2 PE=1 SV=2)

HSP 1 Score: 255.8 bits (652), Expect = 5.2e-67
Identity = 147/207 (71.01%), Postives = 159/207 (76.81%), Query Frame = 0


Query: 1   MDQSERSQHQQQSQQPAGGVGGAGGAGTYSNP--YQTAPLVASGTPAITVPPTQLAFQQA 60
           M+QSE  Q QQQ            G   Y  P  YQ+ P+ A+         + +AFQQA
Sbjct: 1   MEQSEEGQQQQQQ-----------GVMDYVPPHAYQSGPVNAA---------SHMAFQQA 60

Query: 61  QHFHHH----QQQQHQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAP 120
            HFHHH    QQQQ QMFWANQMQEIE TTDFKNH+LPLARIKKIMKADEDVRMISAEAP
Sbjct: 61  HHFHHHHQQQQQQQLQMFWANQMQEIEHTTDFKNHTLPLARIKKIMKADEDVRMISAEAP 120

Query: 121 VVFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEE 180
           V+FAKACEMFILELTLR+WIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEE
Sbjct: 121 VIFAKACEMFILELTLRAWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEE 180

Query: 181 GLGITKASIP-VVGSPADIPYYYVPSQ 201
           GLG+TK +IP VVGSP   PYYY+  Q
Sbjct: 181 GLGVTKGTIPSVVGSP---PYYYLQQQ 184

[Close]

BLAST of CmoCh19G003130 vs. ExPASy Swiss-Prot
Match: Q655V5 (Nuclear transcription factor Y subunit C-4 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYC4 PE=1 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 1.2e-58
Identity = 140/243 (57.61%), Postives = 166/243 (68.31%), Query Frame = 0


Query: 11  QQSQQPAGGVG-GAGGAGTYS--NPYQTAP-----LVASGTPAITVPPT--------QLA 70
           + S QP   +G  AGG+  Y    P  T P     + A   PA + P          QL 
Sbjct: 2   EPSSQPQPAIGVVAGGSQVYPAYRPAATVPTAPAVIPAGSQPAPSFPANPDQLSAQHQLV 61

Query: 71  FQQAQHFH----HHQQQQHQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMIS 130
           +QQAQ FH      QQ+Q Q FWA ++ +IEQTTDFKNHSLPLARIKKIMKADEDVRMIS
Sbjct: 62  YQQAQQFHQQLQQQQQRQLQQFWAERLVDIEQTTDFKNHSLPLARIKKIMKADEDVRMIS 121

Query: 131 AEAPVVFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDE 190
           AEAPV+FAKACE+FILELTLRSW+HTEENKRRTLQKNDIAAAI+RTD++DFLVDI+PRD+
Sbjct: 122 AEAPVIFAKACEIFILELTLRSWMHTEENKRRTLQKNDIAAAITRTDMYDFLVDIVPRDD 181

Query: 191 LKEEGLGITKASIPVVGSPAD-IPY-YYVPSQHPVGATGMIMGKQLDQANVY-GATAQQP 231
           LKEEG+G+ +A +P +G PAD  PY YYVP Q   GA     G+Q     ++     QQ 
Sbjct: 182 LKEEGVGLPRAGLPPLGVPADSYPYGYYVPQQQVPGAGIAYGGQQGHPGYLWQDPQEQQE 241

[Close]

BLAST of CmoCh19G003130 vs. ExPASy Swiss-Prot
Match: Q8L4B2 (Nuclear transcription factor Y subunit C-9 OS=Arabidopsis thaliana OX=3702 GN=NFYC9 PE=1 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 2.4e-56
Identity = 140/235 (59.57%), Postives = 162/235 (68.94%), Query Frame = 0


Query: 22  GAGGAGTY-SNPYQTAPLVASGTPAITV-----PPTQLAFQQAQHFHHHQQ--QQHQMFW 81
           G  GA  Y +NPYQT P+    T A TV      P QLAF Q       QQ  QQ Q FW
Sbjct: 7   GQSGAMNYGTNPYQTNPM---STTAATVAGGAAQPGQLAFHQIHQQQQQQQLAQQLQAFW 66

Query: 82  ANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFAKACEMFILELTLRSW 141
            NQ +EIE+TTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFA+ACEMFILELTLRSW
Sbjct: 67  ENQFKEIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSW 126

Query: 142 IHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLG-ITKASIPVVGSPADI 201
            HTEENKRRTLQKNDIAAA++RTD+FDFLVDI+PR++L++E LG I + ++P   + A  
Sbjct: 127 NHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIVPREDLRDEVLGSIPRGTVPEAAA-AGY 186

Query: 202 PYYYVPS-QHPVGATGMIMGKQLDQANVYGATAQQPRPPMPFMPWPHTQPQQQQQ 247
           PY Y+P+   P+G  GM+MG      N  GA      PP P+M  P  Q Q   Q
Sbjct: 187 PYGYLPAGTAPIGNPGMVMG------NPGGA-----YPPNPYMGQPMWQQQAPDQ 226

[Close]

BLAST of CmoCh19G003130 vs. ExPASy Swiss-Prot
Match: Q9SMP0 (Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana OX=3702 GN=NFYC1 PE=1 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 8.5e-54
Identity = 114/191 (59.69%), Postives = 136/191 (71.20%), Query Frame = 0


Query: 34  QTAPLVASGTPAITVPPTQLAFQQAQHFHH---HQQQQHQMFWANQMQEIEQTTDFKNHS 93
           Q  P  A+G P      T  A      +HH    QQQQ Q+FW  Q QEIEQ  DFKNH 
Sbjct: 6   QQPPPSAAGIPPPPPGTTISAAGGGASYHHLLQQQQQQLQLFWTYQRQEIEQVNDFKNHQ 65

Query: 94  LPLARIKKIMKADEDVRMISAEAPVVFAKACEMFILELTLRSWIHTEENKRRTLQKNDIA 153
           LPLARIKKIMKADEDVRMISAEAP++FAKACE+FILELT+RSW+H EENKRRTLQKNDIA
Sbjct: 66  LPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIA 125

Query: 154 AAISRTDVFDFLVDIIPRDELKEEGLGITKASIPVVGSPADIPYYYVPSQHPVGATGMIM 213
           AAI+RTD+FDFLVDI+PRDE+K+E   +    + V  + + +PYYY P   P G  GM++
Sbjct: 126 AAITRTDIFDFLVDIVPRDEIKDEA-AVLGGGMVVAPTASGVPYYYPPMGQPAGPGGMMI 185

Query: 214 GK-QLDQANVY 221
           G+  +D   VY
Sbjct: 186 GRPAMDPNGVY 195

[Close]

BLAST of CmoCh19G003130 vs. ExPASy Swiss-Prot
Match: Q9ZVL3 (Nuclear transcription factor Y subunit C-3 OS=Arabidopsis thaliana OX=3702 GN=NFYC3 PE=1 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 6.1e-52
Identity = 131/230 (56.96%), Postives = 149/230 (64.78%), Query Frame = 0


Query: 22  GAGGAGTY-SNPYQTAPLVASGTPAITVPPTQLAFQQAQHFHHHQQQQH-----QMFWAN 81
           G   A  Y SNPYQ        T A+T  PT  +   A H  H QQQQ      Q FW  
Sbjct: 5   GQSSAMNYGSNPYQ--------TNAMTTTPTG-SDHPAYHQIHQQQQQQLTQQLQSFWET 64

Query: 82  QMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFAKACEMFILELTLRSWIH 141
           Q +EIE+TTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFA+ACEMFILELTLRSW H
Sbjct: 65  QFKEIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNH 124

Query: 142 TEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGITKASIPVVGSPADIPYY 201
           TEENKRRTLQKNDIAAA++RTD+FDFLVDI+PR++L++E LG   A      + A  PY 
Sbjct: 125 TEENKRRTLQKNDIAAAVTRTDIFDFLVDIVPREDLRDEVLGGVGAE---AATAAGYPYG 184

Query: 202 YV-PSQHPVGATGMIMGKQLDQANVYGATAQQPRPPMPFMPWPHTQPQQQ 245
           Y+ P   P+G  GM+MG            A  P P M    W    P+QQ
Sbjct: 185 YLPPGTAPIGNPGMVMG---------NPGAYPPNPYMGQPMWQQPGPEQQ 213

[Close]

BLAST of CmoCh19G003130 vs. ExPASy TrEMBL
Match: A0A6J1HGB3 (nuclear transcription factor Y subunit C-2-like OS=Cucurbita moschata OX=3662 GN=LOC111464039 PE=4 SV=1)

HSP 1 Score: 485.3 bits (1248), Expect = 1.5e-133
Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 0


Query: 1   MDQSERSQHQQQSQQPAGGVGGAGGAGTYSNPYQTAPLVASGTPAITVPPTQLAFQQAQH 60
           MDQSERSQHQQQSQQPAGGVGGAGGAGTYSNPYQTAPLVASGTPAITVPPTQLAFQQAQH
Sbjct: 1   MDQSERSQHQQQSQQPAGGVGGAGGAGTYSNPYQTAPLVASGTPAITVPPTQLAFQQAQH 60

Query: 61  FHHHQQQQHQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFAKA 120
           FHHHQQQQHQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFAKA
Sbjct: 61  FHHHQQQQHQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFAKA 120

Query: 121 CEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGITK 180
           CEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGITK
Sbjct: 121 CEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGITK 180

Query: 181 ASIPVVGSPADIPYYYVPSQHPVGATGMIMGKQLDQANVYGATAQQPRPPMPFMPWPHTQ 240
           ASIPVVGSPADIPYYYVPSQHPVGATGMIMGKQLDQANVYGATAQQPRPPMPFMPWPHTQ
Sbjct: 181 ASIPVVGSPADIPYYYVPSQHPVGATGMIMGKQLDQANVYGATAQQPRPPMPFMPWPHTQ 240

Query: 241 PQQQQQQQ 249
           PQQQQQQQ
Sbjct: 241 PQQQQQQQ 248

[Close]

BLAST of CmoCh19G003130 vs. ExPASy TrEMBL
Match: A0A6J1HX86 (nuclear transcription factor Y subunit C-2-like OS=Cucurbita maxima OX=3661 GN=LOC111467065 PE=4 SV=1)

HSP 1 Score: 468.8 bits (1205), Expect = 1.4e-128
Identity = 243/251 (96.81%), Postives = 244/251 (97.21%), Query Frame = 0


Query: 1   MDQSERSQHQQQSQQP---AGGVGGAGGAGTYSNPYQTAPLVASGTPAITVPPTQLAFQQ 60
           MDQSERSQHQQQSQQP   AGGVGG GGAGTYSNPYQTAPLVASGTPAITVPPTQLAFQQ
Sbjct: 1   MDQSERSQHQQQSQQPAGGAGGVGGVGGAGTYSNPYQTAPLVASGTPAITVPPTQLAFQQ 60

Query: 61  AQHFHHHQQQQHQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVF 120
           AQHFHHHQQQQHQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVF
Sbjct: 61  AQHFHHHQQQQHQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVF 120

Query: 121 AKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLG 180
           AKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISR DVFDFLVDIIPRDELKEEG G
Sbjct: 121 AKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRIDVFDFLVDIIPRDELKEEGHG 180

Query: 181 ITKASIPVVGSPADIPYYYVPSQHPVGATGMIMGKQLDQANVYGATAQQPRPPMPFMPWP 240
           ITKASIPVVGSPADIPYYYVPSQHPVGATGMIMGKQLDQANVYGATAQQ RPPMPFMPWP
Sbjct: 181 ITKASIPVVGSPADIPYYYVPSQHPVGATGMIMGKQLDQANVYGATAQQQRPPMPFMPWP 240

Query: 241 HTQPQQQQQQQ 249
           HTQP+QQQQQQ
Sbjct: 241 HTQPRQQQQQQ 251

[Close]

BLAST of CmoCh19G003130 vs. ExPASy TrEMBL
Match: A0A1S3C190 (nuclear transcription factor Y subunit C-2 OS=Cucumis melo OX=3656 GN=LOC103495470 PE=4 SV=1)

HSP 1 Score: 435.6 bits (1119), Expect = 1.3e-118
Identity = 231/263 (87.83%), Postives = 238/263 (90.49%), Query Frame = 0


Query: 1   MDQSERSQHQQQSQQPAGGVGGAGGAGTYSNPYQTAPLVASGTPAITVPPT--------- 60
           MDQSERSQHQQQSQQPAGGVG   G   YSNPYQTAP+VASGTPAIT+PPT         
Sbjct: 1   MDQSERSQHQQQSQQPAGGVG--AGQLQYSNPYQTAPMVASGTPAITIPPTQPPSSFSNS 60

Query: 61  --QLAFQQAQHFHHHQQQQH----QMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADED 120
             QLA+QQAQHFHH QQQQ     QMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADED
Sbjct: 61  PHQLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADED 120

Query: 121 VRMISAEAPVVFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDI 180
           VRMISAEAPV+FAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDI
Sbjct: 121 VRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDI 180

Query: 181 IPRDELKEEGLGITKASIPVVGSPADIPYYYVPSQHPVGATGMIMGKQLDQANVYGATAQ 240
           IPRDELKEEGLGITKAS+PVVGSPAD+PYYYVPSQHPVGATGMIMGKQLDQAN+YGATAQ
Sbjct: 181 IPRDELKEEGLGITKASLPVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANMYGATAQ 240

Query: 241 QPRPPMPFMPWPHTQPQQQQQQQ 249
           QPRP MPFMPWPHTQPQQQQQ Q
Sbjct: 241 QPRPSMPFMPWPHTQPQQQQQTQ 261

[Close]

BLAST of CmoCh19G003130 vs. ExPASy TrEMBL
Match: A0A5A7SLP2 (Nuclear transcription factor Y subunit C-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G002960 PE=4 SV=1)

HSP 1 Score: 435.6 bits (1119), Expect = 1.3e-118
Identity = 231/263 (87.83%), Postives = 238/263 (90.49%), Query Frame = 0


Query: 1   MDQSERSQHQQQSQQPAGGVGGAGGAGTYSNPYQTAPLVASGTPAITVPPT--------- 60
           MDQSERSQHQQQSQQPAGGVG   G   YSNPYQTAP+VASGTPAIT+PPT         
Sbjct: 1   MDQSERSQHQQQSQQPAGGVG--AGQLQYSNPYQTAPMVASGTPAITIPPTQPPSSFSNS 60

Query: 61  --QLAFQQAQHFHHHQQQQH----QMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADED 120
             QLA+QQAQHFHH QQQQ     QMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADED
Sbjct: 61  PHQLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADED 120

Query: 121 VRMISAEAPVVFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDI 180
           VRMISAEAPV+FAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDI
Sbjct: 121 VRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDI 180

Query: 181 IPRDELKEEGLGITKASIPVVGSPADIPYYYVPSQHPVGATGMIMGKQLDQANVYGATAQ 240
           IPRDELKEEGLGITKAS+PVVGSPAD+PYYYVPSQHPVGATGMIMGKQLDQAN+YGATAQ
Sbjct: 181 IPRDELKEEGLGITKASLPVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANMYGATAQ 240

Query: 241 QPRPPMPFMPWPHTQPQQQQQQQ 249
           QPRP MPFMPWPHTQPQQQQQ Q
Sbjct: 241 QPRPSMPFMPWPHTQPQQQQQTQ 261

[Close]

BLAST of CmoCh19G003130 vs. ExPASy TrEMBL
Match: A0A0A0K5U1 (Histone domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G051420 PE=4 SV=1)

HSP 1 Score: 435.6 bits (1119), Expect = 1.3e-118
Identity = 231/263 (87.83%), Postives = 238/263 (90.49%), Query Frame = 0


Query: 1   MDQSERSQHQQQSQQPAGGVGGAGGAGTYSNPYQTAPLVASGTPAITVPPT--------- 60
           MDQSERSQHQQQSQQPAGGVG   G   YSNPYQTAP+VASGTPAIT+PPT         
Sbjct: 1   MDQSERSQHQQQSQQPAGGVG--AGQLQYSNPYQTAPMVASGTPAITIPPTQPPSSFSNS 60

Query: 61  --QLAFQQAQHFHHHQQQQH----QMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADED 120
             QLA+QQAQHFHH QQQQ     QMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADED
Sbjct: 61  PHQLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADED 120

Query: 121 VRMISAEAPVVFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDI 180
           VRMISAEAPV+FAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDI
Sbjct: 121 VRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDI 180

Query: 181 IPRDELKEEGLGITKASIPVVGSPADIPYYYVPSQHPVGATGMIMGKQLDQANVYGATAQ 240
           IPRDELKEEGLGITKAS+PVVGSPAD+PYYYVPSQHPVGATGMIMGKQLDQAN+YGATAQ
Sbjct: 181 IPRDELKEEGLGITKASLPVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANMYGATAQ 240

Query: 241 QPRPPMPFMPWPHTQPQQQQQQQ 249
           QPRP MPFMPWPHTQPQQQQQ Q
Sbjct: 241 QPRPSMPFMPWPHTQPQQQQQTQ 261

[Close]

BLAST of CmoCh19G003130 vs. TAIR 10
Match: AT1G56170.1 (nuclear factor Y, subunit C2 )

HSP 1 Score: 255.8 bits (652), Expect = 3.7e-68
Identity = 147/207 (71.01%), Postives = 159/207 (76.81%), Query Frame = 0


Query: 1   MDQSERSQHQQQSQQPAGGVGGAGGAGTYSNP--YQTAPLVASGTPAITVPPTQLAFQQA 60
           M+QSE  Q QQQ            G   Y  P  YQ+ P+ A+         + +AFQQA
Sbjct: 1   MEQSEEGQQQQQQ-----------GVMDYVPPHAYQSGPVNAA---------SHMAFQQA 60

Query: 61  QHFHHH----QQQQHQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAP 120
            HFHHH    QQQQ QMFWANQMQEIE TTDFKNH+LPLARIKKIMKADEDVRMISAEAP
Sbjct: 61  HHFHHHHQQQQQQQLQMFWANQMQEIEHTTDFKNHTLPLARIKKIMKADEDVRMISAEAP 120

Query: 121 VVFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEE 180
           V+FAKACEMFILELTLR+WIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEE
Sbjct: 121 VIFAKACEMFILELTLRAWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEE 180

Query: 181 GLGITKASIP-VVGSPADIPYYYVPSQ 201
           GLG+TK +IP VVGSP   PYYY+  Q
Sbjct: 181 GLGVTKGTIPSVVGSP---PYYYLQQQ 184

[Close]

BLAST of CmoCh19G003130 vs. TAIR 10
Match: AT1G56170.2 (nuclear factor Y, subunit C2 )

HSP 1 Score: 255.8 bits (652), Expect = 3.7e-68
Identity = 147/207 (71.01%), Postives = 159/207 (76.81%), Query Frame = 0


Query: 1   MDQSERSQHQQQSQQPAGGVGGAGGAGTYSNP--YQTAPLVASGTPAITVPPTQLAFQQA 60
           M+QSE  Q QQQ            G   Y  P  YQ+ P+ A+         + +AFQQA
Sbjct: 1   MEQSEEGQQQQQQ-----------GVMDYVPPHAYQSGPVNAA---------SHMAFQQA 60

Query: 61  QHFHHH----QQQQHQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAP 120
            HFHHH    QQQQ QMFWANQMQEIE TTDFKNH+LPLARIKKIMKADEDVRMISAEAP
Sbjct: 61  HHFHHHHQQQQQQQLQMFWANQMQEIEHTTDFKNHTLPLARIKKIMKADEDVRMISAEAP 120

Query: 121 VVFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEE 180
           V+FAKACEMFILELTLR+WIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEE
Sbjct: 121 VIFAKACEMFILELTLRAWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEE 180

Query: 181 GLGITKASIP-VVGSPADIPYYYVPSQ 201
           GLG+TK +IP VVGSP   PYYY+  Q
Sbjct: 181 GLGVTKGTIPSVVGSP---PYYYLQQQ 184

[Close]

BLAST of CmoCh19G003130 vs. TAIR 10
Match: AT1G08970.4 (nuclear factor Y, subunit C9 )

HSP 1 Score: 220.3 bits (560), Expect = 1.7e-57
Identity = 140/235 (59.57%), Postives = 162/235 (68.94%), Query Frame = 0


Query: 22  GAGGAGTY-SNPYQTAPLVASGTPAITV-----PPTQLAFQQAQHFHHHQQ--QQHQMFW 81
           G  GA  Y +NPYQT P+    T A TV      P QLAF Q       QQ  QQ Q FW
Sbjct: 7   GQSGAMNYGTNPYQTNPM---STTAATVAGGAAQPGQLAFHQIHQQQQQQQLAQQLQAFW 66

Query: 82  ANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFAKACEMFILELTLRSW 141
            NQ +EIE+TTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFA+ACEMFILELTLRSW
Sbjct: 67  ENQFKEIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSW 126

Query: 142 IHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLG-ITKASIPVVGSPADI 201
            HTEENKRRTLQKNDIAAA++RTD+FDFLVDI+PR++L++E LG I + ++P   + A  
Sbjct: 127 NHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIVPREDLRDEVLGSIPRGTVPEAAA-AGY 186

Query: 202 PYYYVPS-QHPVGATGMIMGKQLDQANVYGATAQQPRPPMPFMPWPHTQPQQQQQ 247
           PY Y+P+   P+G  GM+MG      N  GA      PP P+M  P  Q Q   Q
Sbjct: 187 PYGYLPAGTAPIGNPGMVMG------NPGGA-----YPPNPYMGQPMWQQQAPDQ 226

[Close]

BLAST of CmoCh19G003130 vs. TAIR 10
Match: AT1G08970.1 (nuclear factor Y, subunit C9 )

HSP 1 Score: 220.3 bits (560), Expect = 1.7e-57
Identity = 140/235 (59.57%), Postives = 162/235 (68.94%), Query Frame = 0


Query: 22  GAGGAGTY-SNPYQTAPLVASGTPAITV-----PPTQLAFQQAQHFHHHQQ--QQHQMFW 81
           G  GA  Y +NPYQT P+    T A TV      P QLAF Q       QQ  QQ Q FW
Sbjct: 7   GQSGAMNYGTNPYQTNPM---STTAATVAGGAAQPGQLAFHQIHQQQQQQQLAQQLQAFW 66

Query: 82  ANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFAKACEMFILELTLRSW 141
            NQ +EIE+TTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFA+ACEMFILELTLRSW
Sbjct: 67  ENQFKEIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSW 126

Query: 142 IHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLG-ITKASIPVVGSPADI 201
            HTEENKRRTLQKNDIAAA++RTD+FDFLVDI+PR++L++E LG I + ++P   + A  
Sbjct: 127 NHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIVPREDLRDEVLGSIPRGTVPEAAA-AGY 186

Query: 202 PYYYVPS-QHPVGATGMIMGKQLDQANVYGATAQQPRPPMPFMPWPHTQPQQQQQ 247
           PY Y+P+   P+G  GM+MG      N  GA      PP P+M  P  Q Q   Q
Sbjct: 187 PYGYLPAGTAPIGNPGMVMG------NPGGA-----YPPNPYMGQPMWQQQAPDQ 226

[Close]

BLAST of CmoCh19G003130 vs. TAIR 10
Match: AT1G08970.3 (nuclear factor Y, subunit C9 )

HSP 1 Score: 220.3 bits (560), Expect = 1.7e-57
Identity = 140/235 (59.57%), Postives = 162/235 (68.94%), Query Frame = 0


Query: 22  GAGGAGTY-SNPYQTAPLVASGTPAITV-----PPTQLAFQQAQHFHHHQQ--QQHQMFW 81
           G  GA  Y +NPYQT P+    T A TV      P QLAF Q       QQ  QQ Q FW
Sbjct: 7   GQSGAMNYGTNPYQTNPM---STTAATVAGGAAQPGQLAFHQIHQQQQQQQLAQQLQAFW 66

Query: 82  ANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFAKACEMFILELTLRSW 141
            NQ +EIE+TTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFA+ACEMFILELTLRSW
Sbjct: 67  ENQFKEIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSW 126

Query: 142 IHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLG-ITKASIPVVGSPADI 201
            HTEENKRRTLQKNDIAAA++RTD+FDFLVDI+PR++L++E LG I + ++P   + A  
Sbjct: 127 NHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIVPREDLRDEVLGSIPRGTVPEAAA-AGY 186

Query: 202 PYYYVPS-QHPVGATGMIMGKQLDQANVYGATAQQPRPPMPFMPWPHTQPQQQQQ 247
           PY Y+P+   P+G  GM+MG      N  GA      PP P+M  P  Q Q   Q
Sbjct: 187 PYGYLPAGTAPIGNPGMVMG------NPGGA-----YPPNPYMGQPMWQQQAPDQ 226

The following BLAST results are available for this feature:

BLAST of CmoCh19G003130 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LCG7	5.2e-67	71.01	Nuclear transcription factor Y subunit C-2 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q655V5	1.2e-58	57.61	Nuclear transcription factor Y subunit C-4 OS=Oryza sativa subsp. japonica OX=39...	[more]
Q8L4B2	2.4e-56	59.57	Nuclear transcription factor Y subunit C-9 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q9SMP0	8.5e-54	59.69	Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q9ZVL3	6.1e-52	56.96	Nuclear transcription factor Y subunit C-3 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]

BLAST of CmoCh19G003130 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HGB3	1.5e-133	100.00	nuclear transcription factor Y subunit C-2-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1HX86	1.4e-128	96.81	nuclear transcription factor Y subunit C-2-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A1S3C190	1.3e-118	87.83	nuclear transcription factor Y subunit C-2 OS=Cucumis melo OX=3656 GN=LOC1034954...	[more]
A0A5A7SLP2	1.3e-118	87.83	Nuclear transcription factor Y subunit C-2 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A0A0K5U1	1.3e-118	87.83	Histone domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G051420 PE=...	[more]

BLAST of CmoCh19G003130 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G56170.1	3.7e-68	71.01	nuclear factor Y, subunit C2	[more]
AT1G56170.2	3.7e-68	71.01	nuclear factor Y, subunit C2	[more]
AT1G08970.4	1.7e-57	59.57	nuclear factor Y, subunit C9	[more]
AT1G08970.1	1.7e-57	59.57	nuclear factor Y, subunit C9	[more]
AT1G08970.3	1.7e-57	59.57	nuclear factor Y, subunit C9	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 63..153 e-value: 7.6E-18 score: 65.1
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 54..168 e-value: 1.9E-47 score: 162.3
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 60..162
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 223..248
None	No IPR available	PANTHER	PTHR10252	HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED	coord: 9..245
None	No IPR available	PANTHER	PTHR10252:SF117	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9	coord: 9..245

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh19G003130.1	CmoCh19G003130.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific
molecular_function	GO:0046982	protein heterodimerization activity