CmoCh18G012650 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh18G012650
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	flap endonuclease GEN-like 2
Location	Cmo_Chr18: 12341896 .. 12346289 (+)
RNA-Seq Expression	CmoCh18G012650
Synteny	CmoCh18G012650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCTTTTCTCATTTCATTTCTTAAAAGAAAAGCGAAAACTAAGAAATCAAGGACCCCCACAAGCCGAAACCTCTCCGCGGGAGAAATGGGGGTAAAGAACTTATGGGATATCTTAGAATCGTGCAAGAAAACTCTCCCACTTCATCGTCTTCAGTAAGTGGTTTCCTTCATTTTCTCGGCAGCCAAACAGGGGATTTGGGTATTTGTATCTGTATTTTCTTTTGAGTTTTTGGGATTTTGAATTGGGGTTCAGGAATAAGAGGCTATGCATCGATCTCTCATGTTGGATGGTTCAGCTTCAAAATGTAAGCAAATCGCATTCTTGTCTGAACCAGAAGATTTACCTGAAAGGGCTCTTTCACCGCCTTCGAGCGCTCATTGCCTTGAATTGCAGCCTTATTTTCGTTACAGGCATGCTCCACATGAAACTACACAGCTATTACGAACAACAAATGATGGGTTCTCGTTTAATTTTGCTTTCTTTTTGCTGTTTGTAGATGGTTCAATTCCTGGCATCAAACTTTCAACTTATAGACGCCGTTTGAACAATGGAAGTGAGGTGGGAATTCTCATAACCCACTTTCGTTTCATTTCTCCTTTTAGCTTGAATGTTACTTACCAAAGATGCAACAAGACAGGTTGTTAAAAATGACACAAATTCCCAGCAAATATCCTCACTGAAAAGAAACAAGGGTTCTGAGTTCTCTTTAATGATAAAAGAGGCAAAAGCCTTAGGACTGGCGCTTGGTATCCCTTGTCTAGATGGGTAAATGCTTAAGTTTTCATTCTGTTTTTGGCTTAATGAAAGAGTTCATTCAATTTTCAATCAGAATCTTATGGTTTCCTGTCTCCTGAGCACTTGAATCTTTTTGCATATACCTCTGAATGTAGGCTCGAGGAAGGGGAAGCACAATGTGCATTACTAAATTCAGAGCTATTATGTGTAAGTTGAGTCTTAGTTATAATGTTTGAGTGCTCCACATGCTTATTGCTTTGCATCTCTGTTGTATTGAACATCATTGCTATTATTAAAGCATCATTTTCTGATCAGGATGGATGTTTTACTTCAGATTCAGATGTTTTCCTTTTTGGTGCGAGGACAGTTTATAGGGACATATGCCTTGGTGAGTGTCCTAGAGCATGCGAAGTTTCTGTAGAGTTGGTTTATGGTTTTAAAAGATGTACTCATTATTCTTATTATTTGTTGTTAAATTAGGAGATGGTGGTCATGTAGTGTGTTATGAAATGGATGACATTGAAGGACAATTGGGCTTTGGAAGGAACTCAATGGTGCGTCTACATTTCGAACAATGTATGATTTAAGAGAGTAGAGTGTTTTTGTGAGATCTCACATTGGTTGGAGAGGTGAACGAATCATTTTTTATAAGGGTGTAGAAACCTCTCCCTAACAGATGCGTTTTAAAACCTTGAGGAGAAGCCTAGAAGGGAAAGCCTAGAGAAGACAATATCCGCTAGTGGTGAGCTTCGATTGTTACAAATAGTATCAGAATCAGACACCGGGTAGTGCGCCAGCGAGAACGCTGGCGCCCAAGGAGGGTGGATTGTGAGATTCCATATTGTTTGGAGAGGGGAACGAAGCATTCTTTATAAGGTGTGGAAACCCCTCCCTAACAGACACATTTTAAAACCTTGAAGGGAAGCTCGGAAGGGAAAGCCTAGAGAAGACAATATCTGCTAGTGGTGGGCTTCGGCTGTTACAAATAGTATCAGAATCAGACACTGGGTAGTGCGCCAGCGAGAACGCGGGCCCCCAAGGAGGGTGGATTGTGAGATTCCATATTGTTTGGAGAGGGGAACGAAGCATTCTTTATAAGGTGTGGAAACCTCTCCCTAACAGCGCATTTTAAAACCTTGAAGGAAAGCTCGGAAGGGAAAGATCAAAGAAGACAATATCTGCTAGCGGTGGGTTTGAGCTGTTACAAATGGTATTAGAGCCAGACACCGGGCAATGTGCCAGCAAAGATACCGGGTCCCCAAGTTGGGTGGATTGTGAGATCCCACATTTGTTGGAGAGAGGAATGAATTCTTTATAAGAGTGTGGAAACACCTCCCTAACAGACGCGTTTTAAAACTTTGAGGGGAAATCTGGAAGGAAAAGACCAAATCGGACAATATCTATTAGCGGTGGCTTGGGGTAACAGTGTTTCACTTGAAAGACGAGCTTTCTCTTTCTATGATCAAATATGTTATCATTACCAAATCATTTTGTGATTTCCAGATTGCTTTGGCCCTACTTCTTGGCAGTGACTACACGCAAGGCGTTTATGGCATGGGTCGTGTAGGTTTCAACTCCTGTTTTTCTCTGTTGGATTGCTTTTTATACTAACAATTCGACTGCAGCATGTAACTGTGTCTATGCTGTTTTTGTACTCTTTGTAGGAATCTGCTCGTCAGATTGTTAAAACAGTAGGAGATAGCACTGTCCTTCAAAAAATTGCATCTGAAGGACTGTCTTACACAATGAAGGGGAAAAATTCCAAGAAGCCAGGACTTCCTAATTCTGGTCATATTACTTCTATCAAGCTTCATTCTCCTTTTTCAACACTAAAAGAAGTGGAATAGGGGAATTTGAGCCTTGGATAGAAACTAAAAAACAACCTTCTTAGCCTCACTAGTGGGCTTAGGAACTTAAATAGTGCAGTTTTGATACTATTCTGATATGATAGGTCAATCAAGTTTTGATTTGTGATGTGGGTTACTTTGGTTTGGTTGTACAGGGGATGGGCAGTACATGCATAAATGTGAGGAGTTTTCACAAGTCATTGATGCCTATTTGAGACCCAAATGCCATTCAGCTGATTCTGATGCTGTGACTAGGTGAGCTTGTTGAACCTTTGGAATTACATTACAAATAGTTCTGTACTCTGTGTTTGTGTTTGCAAAAGAGATCTCACATTAGTTGGAGAGGAGAACGAAACATTCCTTATAAGGGTATAGAAATCTCTCCCTAGAAAACGCGTTTTAAAACTGTGAGGTTGATGGTGATACATAACGGGTCAGAACAGACAATGTCTGTTAACGGTGGGCTCCATTGAAATTTTGTGTCATATTGATATTTACACGATTAGTCTTCAAACTTTCCTTTTTGAAATGCATGTAGACTTTGTTAAATTCATATGCCTTCAGCACTTTTTTTTTTTCTCTCTGCAGGGTTCTTATTCAGCATTCTTTTCAACGTGCCAAGCTTCAGCAGTTCTGTGCCGAATTTTTTGCTTGGCCTCCTGAGAAAACAGGTTCTTTTTTTTTCCTTCATCTTTGGAGCTAACTAGAAAATGGTTCCTTTGATGTTTAGCTTGTGAATAACCCATGCATGGTTCAGATGAGTACATTCTTCCAAAGATAGCAGAAAAAGATCTACGACGATTTGCTAATCTTCGTTCGAACACATCAGACCTCGGTTTCAACATTCCACTTCAAGAGGTATGTTTATTTCTTCAAGAGTTACTTTTATCAGTTGTTACTGATATGGATACTGTTTGATTGCATGTTTTTTATTACAGGTACCTGTAAGTTGTCCTGTTTCTGGAATCGTCAAGCACCGAAAAGTCCAGGGGAACGAATGCTATGAGGTTTCATGGAAAAATTTAGATGGGCTTAGTTCATCTGTTGTACCAGCAGATCTCTTGCAGAGGTATGGAGTGTCATTACATAATTTCTTCTATAACAAATGACGATTTGGATACTTCACAACTATTTCTTTTTGAATATTTCCACAGTGCCTGTCCAGAGATGATTGTAGAATTTGAAGAGCAAAGAGCTCAAGGAAGAAAACCAAATAAGTGCAGAACAAAAACAAAGAAGTCAGAGGCTACTGTGGCTGAAATTGATGAAAGATTCCGAACTCTGTTGCTTGAAATCGAATCTGAAAGCAGGGCGGTTCGAAATCTTTCCCAAGCTCCAATAGTTTCGGAAAACAGTAACTCTGCTACTGGTTTGGATGATTTGCAGGAGATTATTCTTGACGTCGAACCAACCATTGTTGATCATGCTCACGGTACAGAGAACGTTGAGGTCATCAATCTCTTAAGCCCTTCACCTGCAATTCAAACGCGCAAAGTTTCGAAATTTCAACAGGGAAACTGTGAAAAGATTGATGTAATTGATTTGAGTGACACAGAAAATGATCAGTCACCTGAACATGAGAGAAAGGCAAGAGAGTTGAGATTGTTCTTAGCCTCCTTAAAGGGTAAATGACTTCCTCTGGTAGGCCATAAATGTATTATGTATATTGCAACCAAATGTGCAACGCTACCGAAGGAATTAGGATTTAGAATTTGGTTTTTAGATATTGTCTACTTTGACCTGTTACGTATCGCCGTCAGCTAGGGTGAGATTTCCACACATTTATAAGAAATAATTTGTTTTACCCTCA

mRNA sequence

TTTCTTTTCTCATTTCATTTCTTAAAAGAAAAGCGAAAACTAAGAAATCAAGGACCCCCACAAGCCGAAACCTCTCCGCGGGAGAAATGGGGGTAAAGAACTTATGGGATATCTTAGAATCGTGCAAGAAAACTCTCCCACTTCATCGTCTTCAGAATAAGAGGCTATGCATCGATCTCTCATGTTGGATGGTTCAGCTTCAAAATGTAAGCAAATCGCATTCTTGTCTGAACCAGAAGATTTACCTGAAAGGGCTCTTTCACCGCCTTCGAGCGCTCATTGCCTTGAATTGCAGCCTTATTTTCGTTACAGATGGTTCAATTCCTGGCATCAAACTTTCAACTTATAGACGCCGTTTGAACAATGGAAGTGAGGTTGTTAAAAATGACACAAATTCCCAGCAAATATCCTCACTGAAAAGAAACAAGGGTTCTGAGTTCTCTTTAATGATAAAAGAGGCAAAAGCCTTAGGACTGGCGCTTGGTATCCCTTGTCTAGATGGGCTCGAGGAAGGGGAAGCACAATGTGCATTACTAAATTCAGAGCTATTATGTGATGGATGTTTTACTTCAGATTCAGATGTTTTCCTTTTTGGTGCGAGGACAGTTTATAGGGACATATGCCTTGGAGATGGTGGTCATGTAGTGTGTTATGAAATGGATGACATTGAAGGACAATTGGGCTTTGGAAGGAACTCAATGATTGCTTTGGCCCTACTTCTTGGCAGTGACTACACGCAAGGCGTTTATGGCATGGGTCGTGAATCTGCTCGTCAGATTGTTAAAACAGTAGGAGATAGCACTGTCCTTCAAAAAATTGCATCTGAAGGACTGTCTTACACAATGAAGGGGAAAAATTCCAAGAAGCCAGGACTTCCTAATTCTGGGGATGGGCAGTACATGCATAAATGTGAGGAGTTTTCACAAGTCATTGATGCCTATTTGAGACCCAAATGCCATTCAGCTGATTCTGATGCTGTGACTAGGGTTCTTATTCAGCATTCTTTTCAACGTGCCAAGCTTCAGCAGTTCTGTGCCGAATTTTTTGCTTGGCCTCCTGAGAAAACAGATGAGTACATTCTTCCAAAGATAGCAGAAAAAGATCTACGACGATTTGCTAATCTTCGTTCGAACACATCAGACCTCGGTTTCAACATTCCACTTCAAGAGGTACCTGTAAGTTGTCCTGTTTCTGGAATCGTCAAGCACCGAAAAGTCCAGGGGAACGAATGCTATGAGGTTTCATGGAAAAATTTAGATGGGCTTAGTTCATCTGTTGTACCAGCAGATCTCTTGCAGAGTGCCTGTCCAGAGATGATTGTAGAATTTGAAGAGCAAAGAGCTCAAGGAAGAAAACCAAATAAGTGCAGAACAAAAACAAAGAAGTCAGAGGCTACTGTGGCTGAAATTGATGAAAGATTCCGAACTCTGTTGCTTGAAATCGAATCTGAAAGCAGGGCGGTTCGAAATCTTTCCCAAGCTCCAATAGTTTCGGAAAACAGTAACTCTGCTACTGGTTTGGATGATTTGCAGGAGATTATTCTTGACGTCGAACCAACCATTGTTGATCATGCTCACGGTACAGAGAACGTTGAGGTCATCAATCTCTTAAGCCCTTCACCTGCAATTCAAACGCGCAAAGTTTCGAAATTTCAACAGGGAAACTGTGAAAAGATTGATGTAATTGATTTGAGTGACACAGAAAATGATCAGTCACCTGAACATGAGAGAAAGGCAAGAGAGTTGAGATTGTTCTTAGCCTCCTTAAAGGGTAAATGACTTCCTCTGGTAGGCCATAAATGTATTATGTATATTGCAACCAAATGTGCAACGCTACCGAAGGAATTAGGATTTAGAATTTGGTTTTTAGATATTGTCTACTTTGACCTGTTACGTATCGCCGTCAGCTAGGGTGAGATTTCCACACATTTATAAGAAATAATTTGTTTTACCCTCA

Coding sequence (CDS)

ATGGGGGTAAAGAACTTATGGGATATCTTAGAATCGTGCAAGAAAACTCTCCCACTTCATCGTCTTCAGAATAAGAGGCTATGCATCGATCTCTCATGTTGGATGGTTCAGCTTCAAAATGTAAGCAAATCGCATTCTTGTCTGAACCAGAAGATTTACCTGAAAGGGCTCTTTCACCGCCTTCGAGCGCTCATTGCCTTGAATTGCAGCCTTATTTTCGTTACAGATGGTTCAATTCCTGGCATCAAACTTTCAACTTATAGACGCCGTTTGAACAATGGAAGTGAGGTTGTTAAAAATGACACAAATTCCCAGCAAATATCCTCACTGAAAAGAAACAAGGGTTCTGAGTTCTCTTTAATGATAAAAGAGGCAAAAGCCTTAGGACTGGCGCTTGGTATCCCTTGTCTAGATGGGCTCGAGGAAGGGGAAGCACAATGTGCATTACTAAATTCAGAGCTATTATGTGATGGATGTTTTACTTCAGATTCAGATGTTTTCCTTTTTGGTGCGAGGACAGTTTATAGGGACATATGCCTTGGAGATGGTGGTCATGTAGTGTGTTATGAAATGGATGACATTGAAGGACAATTGGGCTTTGGAAGGAACTCAATGATTGCTTTGGCCCTACTTCTTGGCAGTGACTACACGCAAGGCGTTTATGGCATGGGTCGTGAATCTGCTCGTCAGATTGTTAAAACAGTAGGAGATAGCACTGTCCTTCAAAAAATTGCATCTGAAGGACTGTCTTACACAATGAAGGGGAAAAATTCCAAGAAGCCAGGACTTCCTAATTCTGGGGATGGGCAGTACATGCATAAATGTGAGGAGTTTTCACAAGTCATTGATGCCTATTTGAGACCCAAATGCCATTCAGCTGATTCTGATGCTGTGACTAGGGTTCTTATTCAGCATTCTTTTCAACGTGCCAAGCTTCAGCAGTTCTGTGCCGAATTTTTTGCTTGGCCTCCTGAGAAAACAGATGAGTACATTCTTCCAAAGATAGCAGAAAAAGATCTACGACGATTTGCTAATCTTCGTTCGAACACATCAGACCTCGGTTTCAACATTCCACTTCAAGAGGTACCTGTAAGTTGTCCTGTTTCTGGAATCGTCAAGCACCGAAAAGTCCAGGGGAACGAATGCTATGAGGTTTCATGGAAAAATTTAGATGGGCTTAGTTCATCTGTTGTACCAGCAGATCTCTTGCAGAGTGCCTGTCCAGAGATGATTGTAGAATTTGAAGAGCAAAGAGCTCAAGGAAGAAAACCAAATAAGTGCAGAACAAAAACAAAGAAGTCAGAGGCTACTGTGGCTGAAATTGATGAAAGATTCCGAACTCTGTTGCTTGAAATCGAATCTGAAAGCAGGGCGGTTCGAAATCTTTCCCAAGCTCCAATAGTTTCGGAAAACAGTAACTCTGCTACTGGTTTGGATGATTTGCAGGAGATTATTCTTGACGTCGAACCAACCATTGTTGATCATGCTCACGGTACAGAGAACGTTGAGGTCATCAATCTCTTAAGCCCTTCACCTGCAATTCAAACGCGCAAAGTTTCGAAATTTCAACAGGGAAACTGTGAAAAGATTGATGTAATTGATTTGAGTGACACAGAAAATGATCAGTCACCTGAACATGAGAGAAAGGCAAGAGAGTTGAGATTGTTCTTAGCCTCCTTAAAGGGTAAATGA

Protein sequence

MGVKNLWDILESCKKTLPLHRLQNKRLCIDLSCWMVQLQNVSKSHSCLNQKIYLKGLFHRLRALIALNCSLIFVTDGSIPGIKLSTYRRRLNNGSEVVKNDTNSQQISSLKRNKGSEFSLMIKEAKALGLALGIPCLDGLEEGEAQCALLNSELLCDGCFTSDSDVFLFGARTVYRDICLGDGGHVVCYEMDDIEGQLGFGRNSMIALALLLGSDYTQGVYGMGRESARQIVKTVGDSTVLQKIASEGLSYTMKGKNSKKPGLPNSGDGQYMHKCEEFSQVIDAYLRPKCHSADSDAVTRVLIQHSFQRAKLQQFCAEFFAWPPEKTDEYILPKIAEKDLRRFANLRSNTSDLGFNIPLQEVPVSCPVSGIVKHRKVQGNECYEVSWKNLDGLSSSVVPADLLQSACPEMIVEFEEQRAQGRKPNKCRTKTKKSEATVAEIDERFRTLLLEIESESRAVRNLSQAPIVSENSNSATGLDDLQEIILDVEPTIVDHAHGTENVEVINLLSPSPAIQTRKVSKFQQGNCEKIDVIDLSDTENDQSPEHERKARELRLFLASLKGK

Homology

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BLAST of CmoCh18G012650 vs. ExPASy Swiss-Prot
Match: Q9M2Z3 (Single-strand DNA endonuclease 1 OS=Arabidopsis thaliana OX=3702 GN=SEND1 PE=1 SV=2)

HSP 1 Score: 578.6 bits (1490), Expect = 7.9e-164
Identity = 304/598 (50.84%), Postives = 415/598 (69.40%), Query Frame = 0


Query: 1   MGVKNLWDILESCKKTLPLHRLQNKRLCIDLSCWMVQLQNVSKSHSCLNQKIYLKGLFHR 60
           MGVK LWD+LE CKKT PL  LQNKR+C+DLSCWMV+L  V+KS+    +K+YL+G FHR
Sbjct: 1   MGVKYLWDVLEPCKKTFPLDHLQNKRVCVDLSCWMVELHKVNKSYCATKEKVYLRGFFHR 60

Query: 61  LRALIALNCSLIFVTDGSIPGIKLSTYRRRLNNGSEVVKNDTNSQQISSLKRNKGSEFSL 120
           LRALIALNCS+I V+DG+IPGIK+ TY+RRL    E+  +     + +SLKRN GSEFS 
Sbjct: 61  LRALIALNCSIILVSDGAIPGIKVPTYKRRLKARFEIADDGVEPSKETSLKRNMGSEFSC 120

Query: 121 MIKEAKALGLALGIPCLDGLEEGEAQCALLNSELLCDGCFTSDSDVFLFGARTVYRDICL 180
           +IKEAK +   LGI CLDG+EE EAQCALLNSE LCD CF+ DSD+FLFGA+TVYR+ICL
Sbjct: 121 IIKEAKVIASTLGILCLDGIEEAEAQCALLNSESLCDACFSFDSDIFLFGAKTVYREICL 180

Query: 181 GDGGHVVCYEMDDIEGQLGFGRNSMIALALLLGSDYTQGVYGMGRESARQIVKTVGDSTV 240
           G+GG+VVCYEMDDI+ +LG GRNS+IALALLLGSDY+QGV G+ +E A ++V+++GD+ +
Sbjct: 181 GEGGYVVCYEMDDIKKKLGLGRNSLIALALLLGSDYSQGVRGLRQEKACELVRSIGDNVI 240

Query: 241 LQKIASEGLSYTMKGKNSKKPGLPN-------------SGDGQYMHKCEEFSQVIDAYLR 300
           L+K+ASEGLS+  K + SKK   P+             +G+ +   + EE  QVIDA++ 
Sbjct: 241 LEKVASEGLSFAEKPRKSKKQVRPSVCSKKGTLPLVVINGNNRDPERLEEIKQVIDAFMN 300

Query: 301 PKCHSADSDAVTRVLIQHSFQRAKLQQFCAEFFAWPPEKTDEYILPKIAEKDLRRFANLR 360
           PKCH ADS+ V+R L + SFQR KLQ+ C +FF WPPEKTDEYILPK+AE++LRRFANL+
Sbjct: 301 PKCHQADSNTVSRALAEFSFQRTKLQEICHQFFEWPPEKTDEYILPKVAERNLRRFANLQ 360

Query: 361 SNTSDLGFNIPLQ--EVPVSCPVSGIVKHRKVQGNECYEVSWKNLDGLSSSVVPADLLQS 420
           S ++++  N+PL   ++P  CPVS I+K RKVQG EC+EVSW +L+GL SS+VPADL++ 
Sbjct: 361 SRSTEVEVNLPLHKPQMPEKCPVSEIIKTRKVQGRECFEVSWNDLEGLESSIVPADLVER 420

Query: 421 ACPEMIVEFEEQRAQGRKPNKCRTKTKKSEATVAE---IDERFRTLLLEIESESRAVRN- 480
           ACPE I+EF+E+ A  +K  K + K K++ +       ++       L++ S S   R+ 
Sbjct: 421 ACPEKIIEFKEKMAAKKKKPKPKQKQKETSSPTKSSSLVELSLELQHLDLNSTSLVSRST 480

Query: 481 LSQAPIVSENSNSATGLDDLQEIILDVEPTIVDHAHGTEN--------------VEVINL 540
           L +A   +E  NS     D   +I   +    ++A    +               EVI+L
Sbjct: 481 LEEAEQENEQQNSKK--HDYLRLIDSPDRENCNNAWSNRDRLGVGMSSFPLYPETEVIDL 540

Query: 541 LSPSPAIQTRKVSKF---QQGNCEKID-VIDLSDTENDQSPEHERKARELRLFLASLK 562
           +SP P  ++R VS+    Q+ +  +++ VI+LSD+E D   EH +KARELR+FL +++
Sbjct: 541 ISPCPEARSRSVSRSYQEQKSHDHQLETVIELSDSETDDE-EHCKKARELRIFLQNIR 595

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BLAST of CmoCh18G012650 vs. ExPASy Swiss-Prot
Match: Q8W5R1 (Single-strand DNA endonuclease 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SEND1 PE=2 SV=1)

HSP 1 Score: 559.3 bits (1440), Expect = 5.0e-158
Identity = 290/534 (54.31%), Postives = 373/534 (69.85%), Query Frame = 0


Query: 1   MGVKNLWDILESCKKTLPLHRLQNKRLCIDLSCWMVQLQNVSKSHSCLNQKIYLKGLFHR 60
           MGVKNLWDILESCKK LPLH LQNK++C+DLSCW+VQ+ + ++S +    K+YLK LFHR
Sbjct: 1   MGVKNLWDILESCKKKLPLHHLQNKKVCVDLSCWLVQMYSANRSPAFAKDKVYLKNLFHR 60

Query: 61  LRALIALNCSLIFVTDGSIPGIKLSTYRRRLNNGSEVVK--NDTNSQQISSLKRNKGSEF 120
           +RAL+ALNC+L+FVTDG+IP +KL+TYRRRL + S   K  +  NS    SL+RNKGSEF
Sbjct: 61  IRALLALNCTLLFVTDGAIPSLKLATYRRRLGSISHAAKESDQPNSHPSISLRRNKGSEF 120

Query: 121 SLMIKEAKALGLALGIPCLDGLEEGEAQCALLNSELLCDGCFTSDSDVFLFGARTVYRDI 180
           S MIKEAK LG+ALGIPCLDGLEE EAQCA L+ E LCDGCFTSDSD FLFGARTVYRD+
Sbjct: 121 SCMIKEAKRLGMALGIPCLDGLEEAEAQCASLDLESLCDGCFTSDSDAFLFGARTVYRDV 180

Query: 181 CLGDGGHVVCYEMDDIEGQLGFGRNSMIALALLLGSDYTQGVYGMGRESARQIVKTVGDS 240
            +G+GG+V+CYEM+DIE  LGFGRNS+I+LA+LLGSDY+ GV G G E+A ++VK+VGD+
Sbjct: 181 FIGEGGYVICYEMEDIEKTLGFGRNSLISLAVLLGSDYSNGVNGFGPETACRLVKSVGDN 240

Query: 241 TVLQKIASEGLSYT--MKGKNSKK------PGLPNSGDGQYMHKCEEFSQVIDAYLRPKC 300
            +L +I S G+  T   KGKNS        P   +   G       +F  VI+AYL PKC
Sbjct: 241 LILDQILSNGVKATRKCKGKNSGNKVDDMCPKASSCEVGMTQDSDGQFRDVINAYLEPKC 300

Query: 301 HSADSDAVTRVLIQHSFQRAKLQQFCAEFFAWPPEKTDEYILPKIAEKDLRRFANLRSNT 360
           HS DS+AV RV  QH F R +LQ+ C E+F W PEKTD+YILPKIAE++LRRF++LRS +
Sbjct: 301 HSPDSEAVQRVCGQHPFLRPQLQKICEEYFDWSPEKTDQYILPKIAERELRRFSDLRSAS 360

Query: 361 SDLGFNIPLQEVPVSCPVSGIVKHRKVQGNECYEVSWKNLDGLSSSVVPADLLQSACPEM 420
           S LG    L E+PV CPV  IVK RKV GNECYEVSW+N++GL  SVVP DL++SACPE 
Sbjct: 361 SALGIKPLLSEIPVPCPVLAIVKQRKVHGNECYEVSWRNIEGLQVSVVPGDLVKSACPEK 420

Query: 421 IVEFEEQRAQGRKPNKCRTKTKKSEATVAEIDERFRTLLLEIESESRAVRNLSQAPIVSE 480
           I EF E++ + +K  +     K  +A V ++DE+ + LLL IE++S  +   + +   + 
Sbjct: 421 ITEFLEKKGEEKKQKRRARPKKSGQAAVKDVDEQLQELLLGIEADSGGILGATASVCQTL 480

Query: 481 NSNSATGLDDLQEIILDVEPTIVDHAHGTENVEVINLLSPSPAIQTRKVSKFQQ 525
            +     ++D                       V++L SPSP +  RK+SK Q+
Sbjct: 481 TAAYTVAVED-----------------------VVDLSSPSPPL--RKLSKSQK 509

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BLAST of CmoCh18G012650 vs. ExPASy Swiss-Prot
Match: Q17RS7 (Flap endonuclease GEN homolog 1 OS=Homo sapiens OX=9606 GN=GEN1 PE=1 SV=2)

HSP 1 Score: 161.4 bits (407), Expect = 3.0e-38
Identity = 139/508 (27.36%), Postives = 224/508 (44.09%), Query Frame = 0


Query: 1   MGVKNLWDILESCKKTLPLHRLQNKRLCIDLSCWMVQLQNVSKSHSCLNQKIYLKGLFHR 60
           MGV +LW ILE  K+ +PL  L  K + +DLS W+ + Q V K    +  K +L+ LF R
Sbjct: 1   MGVNDLWQILEPVKQHIPLRNLGGKTIAVDLSLWVCEAQTVKKMMGSV-MKPHLRNLFFR 60

Query: 61  LRALIALNCSLIFVTDGSIPGIKLSTYRRRLNNGSEVVKNDTNSQQISSLKRNKGSEFSL 120
           +  L  ++  L+FV +G  P +K     +R  N S        S   S  ++   S F  
Sbjct: 61  ISYLTQMDVKLVFVMEGEPPKLKADVISKR--NQSRY-----GSSGKSWSQKTGRSHFKS 120

Query: 121 MIKEAKALGLALGIPCLDGLEEGEAQCALLNSELLCDGCFTSDSDVFLFGARTVYRDICL 180
           +++E   +   LGIP +    E EA CA LN+    DGC T+D D FL+GA+TVYR+  +
Sbjct: 121 VLRECLHMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLYGAQTVYRNFTM 180

Query: 181 G-DGGHVVCYEMDDIEGQLGFGRNSMIALALLLGSDY-TQGVYGMGRESARQIVKTVGDS 240
                HV CY M  I+ +LG  R++++ LA+LLG DY  +GV G+G+E A ++++ +   
Sbjct: 181 NTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQILKGQ 240

Query: 241 TVLQKI---------ASEGLSYTMKGKN---SKKPGLPNS-----------------GDG 300
           ++LQ+          +S  L  T K  +      PG P                    D 
Sbjct: 241 SLLQRFNRWNETSCNSSPQLLVTKKLAHCSVCSHPGSPKDHERNGCRLCKSDKYCEPHDY 300

Query: 301 QYMHKCE--------EFSQVIDAYLRPKC-------HSA------DSDAVTRVLIQHSFQ 360
           +Y   CE        + S+V +   +  C       H        + D + +V+      
Sbjct: 301 EYCCPCEWHRTEHDRQLSEVENNIKKKACCCEGFPFHEVIQEFLLNKDKLVKVIRYQRPD 360

Query: 361 RAKLQQFCAEFFAWPPEKTDEYILPKIAEKDL--RRFANLRSNTSDLGFNIPLQEVPVSC 420
               Q+F  E   WP     E +L  +   D+  R+  +  SN          Q  P+  
Sbjct: 361 LLLFQRFTLEKMEWPNHYACEKLLVLLTHYDMIERKLGSRNSN----------QLQPIR- 420

Query: 421 PVSGIVKHRKVQGNECYEVSWKNLDGLSS-----------SVVPADLLQSACPEMIVEFE 444
               IVK R   G  C+E+ W+  +  +            ++    L ++A PE++  ++
Sbjct: 421 ----IVKTRIRNGVHCFEIEWEKPEHYAMEDKQHGEFALLTIEEESLFEAAYPEIVAVYQ 480

[Close]

BLAST of CmoCh18G012650 vs. ExPASy Swiss-Prot
Match: Q8BMI4 (Flap endonuclease GEN homolog 1 OS=Mus musculus OX=10090 GN=Gen1 PE=1 SV=2)

HSP 1 Score: 157.9 bits (398), Expect = 3.3e-37
Identity = 156/602 (25.91%), Postives = 257/602 (42.69%), Query Frame = 0


Query: 1   MGVKNLWDILESCKKTLPLHRLQNKRLCIDLSCWMVQLQNVSKSHSCLNQKIYLKGLFHR 60
           MGV +LW ILE  K+ + L  L  K + +DLS W+ + Q V K    + +K +L+ LF R
Sbjct: 1   MGVNDLWQILEPVKQHIHLQDLSGKTIAVDLSLWVCEAQTVKKMIGTV-KKPHLRNLFFR 60

Query: 61  LRALIALNCSLIFVTDGSIPGIKLSTYRRRLNNGSEVVKNDTNSQQISSLKRNKGSEFSL 120
           +  L  +N  L+FV +G  P +K     +R        +        S  ++   S F  
Sbjct: 61  ISYLTQMNVKLVFVMEGEPPMLKADVISKR-------TQTRYGPSGKSRSQKTGRSHFKS 120

Query: 121 MIKEAKALGLALGIPCLDGLEEGEAQCALLNSELLCDGCFTSDSDVFLFGARTVYRDICL 180
           +++E   +   LG+P +    E EA CA LN+    DGC T+D D FL+GA+TVYR+  +
Sbjct: 121 VLRECLEMLECLGMPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLYGAQTVYRNFTM 180

Query: 181 G-DGGHVVCYEMDDIEGQLGFGRNSMIALALLLGSDY-TQGVYGMGRESARQIVKTVGDS 240
                HV CY +  I+ +LG  R++++ LA+LLG DY  +GV G+G+E A ++++     
Sbjct: 181 NTKDPHVDCYTISSIKSKLGLDRDALVGLAVLLGCDYLPKGVPGVGKEQALKLLQIFKGQ 240

Query: 241 TVLQKIAS--EGLSYTMKGKNSKK---------PGLPNS-----------------GDGQ 300
           ++LQ+     E   Y++     KK         PG P                    D  
Sbjct: 241 SLLQRFNQWIEDPCYSVPQSAPKKVVHCSVCSHPGSPKDHERNGCILCKSDKYCEPHDYD 300

Query: 301 YMHKCE--------EFSQVIDAYLRPKC-------HSADSDAV---TRVLIQHSFQRAKL 360
           Y+  CE          S++ +   +  C       H    + +    ++L   ++QR  L
Sbjct: 301 YLCPCEWHQTDHNRHLSEIENNIKKKACSCEGFPFHEVIQEFLLNKNKMLKPITYQRPDL 360

Query: 361 ---QQFCAEFFAWPPEKTDEYILPKIAEKDLRRFANLRSNTSDLGFNIPLQEVPVSCPVS 420
              Q+F  +   WP     E +L  +   D+    + R  ++ L    P++         
Sbjct: 361 LLFQRFTVQKMEWPSHYACEKLLVLLTRYDMIERKHGRKTSNQLQ---PIR--------- 420

Query: 421 GIVKHRKVQGNECYEVSWKNLD---------GLSS--SVVPADLLQSACPEMIVEFEEQ- 480
            IVK R   G  C E+ W+  +         G  S  ++  A L ++A P+ +  +++Q 
Sbjct: 421 -IVKPRVRNGVHCLEIEWEKPEHYVVEDGDPGKLSLLTMEEASLFEAAYPDAVAVYQKQL 480

Query: 481 -RAQGRKPNKCRTKTKKSEATVAEIDERFRTLLLEIESESRAVRNLSQAPIVSENSNSAT 530
              +GRK    + K K S   + E D+            S+++  L          N   
Sbjct: 481 SETKGRKQKSMKNKPKGSH--LPEADDVI---------NSQSLMTLKPTSKAFPKQNPKI 540

[Close]

BLAST of CmoCh18G012650 vs. ExPASy Swiss-Prot
Match: Q9ATY5 (DNA repair protein UVH3 OS=Arabidopsis thaliana OX=3702 GN=UVH3 PE=2 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.2e-26
Identity = 99/290 (34.14%), Postives = 130/290 (44.83%), Query Frame = 0


Query: 110  LKRNKGSEFSLMIKEAKALGLALGIPCLDGLEEGEAQCALLNSELLCDGCFTSDSDVFLF 169
            L+RN  S  S M  E + L    GIP +    E EAQCA +    L DG  T DSDVFLF
Sbjct: 914  LERNAESVSSEMFAECQELLQIFGIPYIIAPMEAEAQCAFMEQSNLVDGIVTDDSDVFLF 973

Query: 170  GARTVYRDICLGDGGHVVCYEMDDIEGQLGFGRNSMIALALLLGSDYTQGVYGMGRESAR 229
            GAR+VY++I   D  +V  Y M DIE +LG  R+ +I +A+LLGSDYT+G+ G+G  +A 
Sbjct: 974  GARSVYKNI-FDDRKYVETYFMKDIEKELGLSRDKIIRMAMLLGSDYTEGISGIGIVNAI 1033

Query: 230  QIVKTVGDSTVLQKIAS--EGLSYTMKGKNSKKPG----------LPNSG--DGQYMHKC 289
            ++V    +   LQK     E    T+ GK   K G          + N G   G      
Sbjct: 1034 EVVTAFPEEDGLQKFREWVESPDPTILGKTDAKTGSKVKKRGSASVDNKGIISGASTDDT 1093

Query: 290  EEFSQ-----------------------VIDAYLRPKCHSADSDAVTRVLIQHSFQRAKL 349
            EE  Q                       VI AYL P+      D  T          + L
Sbjct: 1094 EEIKQIFMDQHRKVSKNWHIPLTFPSEAVISAYLNPQV-----DLSTEKFSWGKPDLSVL 1153

[Close]

BLAST of CmoCh18G012650 vs. ExPASy TrEMBL
Match: A0A6J1FZ58 (flap endonuclease GEN-like 2 OS=Cucurbita moschata OX=3662 GN=LOC111449235 PE=4 SV=1)

HSP 1 Score: 1121.7 bits (2900), Expect = 0.0e+00
Identity = 563/563 (100.00%), Postives = 563/563 (100.00%), Query Frame = 0


Query: 1   MGVKNLWDILESCKKTLPLHRLQNKRLCIDLSCWMVQLQNVSKSHSCLNQKIYLKGLFHR 60
           MGVKNLWDILESCKKTLPLHRLQNKRLCIDLSCWMVQLQNVSKSHSCLNQKIYLKGLFHR
Sbjct: 1   MGVKNLWDILESCKKTLPLHRLQNKRLCIDLSCWMVQLQNVSKSHSCLNQKIYLKGLFHR 60

Query: 61  LRALIALNCSLIFVTDGSIPGIKLSTYRRRLNNGSEVVKNDTNSQQISSLKRNKGSEFSL 120
           LRALIALNCSLIFVTDGSIPGIKLSTYRRRLNNGSEVVKNDTNSQQISSLKRNKGSEFSL
Sbjct: 61  LRALIALNCSLIFVTDGSIPGIKLSTYRRRLNNGSEVVKNDTNSQQISSLKRNKGSEFSL 120

Query: 121 MIKEAKALGLALGIPCLDGLEEGEAQCALLNSELLCDGCFTSDSDVFLFGARTVYRDICL 180
           MIKEAKALGLALGIPCLDGLEEGEAQCALLNSELLCDGCFTSDSDVFLFGARTVYRDICL
Sbjct: 121 MIKEAKALGLALGIPCLDGLEEGEAQCALLNSELLCDGCFTSDSDVFLFGARTVYRDICL 180

Query: 181 GDGGHVVCYEMDDIEGQLGFGRNSMIALALLLGSDYTQGVYGMGRESARQIVKTVGDSTV 240
           GDGGHVVCYEMDDIEGQLGFGRNSMIALALLLGSDYTQGVYGMGRESARQIVKTVGDSTV
Sbjct: 181 GDGGHVVCYEMDDIEGQLGFGRNSMIALALLLGSDYTQGVYGMGRESARQIVKTVGDSTV 240

Query: 241 LQKIASEGLSYTMKGKNSKKPGLPNSGDGQYMHKCEEFSQVIDAYLRPKCHSADSDAVTR 300
           LQKIASEGLSYTMKGKNSKKPGLPNSGDGQYMHKCEEFSQVIDAYLRPKCHSADSDAVTR
Sbjct: 241 LQKIASEGLSYTMKGKNSKKPGLPNSGDGQYMHKCEEFSQVIDAYLRPKCHSADSDAVTR 300

Query: 301 VLIQHSFQRAKLQQFCAEFFAWPPEKTDEYILPKIAEKDLRRFANLRSNTSDLGFNIPLQ 360
           VLIQHSFQRAKLQQFCAEFFAWPPEKTDEYILPKIAEKDLRRFANLRSNTSDLGFNIPLQ
Sbjct: 301 VLIQHSFQRAKLQQFCAEFFAWPPEKTDEYILPKIAEKDLRRFANLRSNTSDLGFNIPLQ 360

Query: 361 EVPVSCPVSGIVKHRKVQGNECYEVSWKNLDGLSSSVVPADLLQSACPEMIVEFEEQRAQ 420
           EVPVSCPVSGIVKHRKVQGNECYEVSWKNLDGLSSSVVPADLLQSACPEMIVEFEEQRAQ
Sbjct: 361 EVPVSCPVSGIVKHRKVQGNECYEVSWKNLDGLSSSVVPADLLQSACPEMIVEFEEQRAQ 420

Query: 421 GRKPNKCRTKTKKSEATVAEIDERFRTLLLEIESESRAVRNLSQAPIVSENSNSATGLDD 480
           GRKPNKCRTKTKKSEATVAEIDERFRTLLLEIESESRAVRNLSQAPIVSENSNSATGLDD
Sbjct: 421 GRKPNKCRTKTKKSEATVAEIDERFRTLLLEIESESRAVRNLSQAPIVSENSNSATGLDD 480

Query: 481 LQEIILDVEPTIVDHAHGTENVEVINLLSPSPAIQTRKVSKFQQGNCEKIDVIDLSDTEN 540
           LQEIILDVEPTIVDHAHGTENVEVINLLSPSPAIQTRKVSKFQQGNCEKIDVIDLSDTEN
Sbjct: 481 LQEIILDVEPTIVDHAHGTENVEVINLLSPSPAIQTRKVSKFQQGNCEKIDVIDLSDTEN 540

Query: 541 DQSPEHERKARELRLFLASLKGK 564
           DQSPEHERKARELRLFLASLKGK
Sbjct: 541 DQSPEHERKARELRLFLASLKGK 563

[Close]

BLAST of CmoCh18G012650 vs. ExPASy TrEMBL
Match: A0A6J1HZ11 (flap endonuclease GEN-like 2 OS=Cucurbita maxima OX=3661 GN=LOC111467522 PE=4 SV=1)

HSP 1 Score: 1080.1 bits (2792), Expect = 0.0e+00
Identity = 541/563 (96.09%), Postives = 553/563 (98.22%), Query Frame = 0


Query: 1   MGVKNLWDILESCKKTLPLHRLQNKRLCIDLSCWMVQLQNVSKSHSCLNQKIYLKGLFHR 60
           MGVKNLWDILESCKKTLPLHRLQNKRLCIDLSCWMVQLQNVSKSHSCLNQKIYLKGLFHR
Sbjct: 1   MGVKNLWDILESCKKTLPLHRLQNKRLCIDLSCWMVQLQNVSKSHSCLNQKIYLKGLFHR 60

Query: 61  LRALIALNCSLIFVTDGSIPGIKLSTYRRRLNNGSEVVKNDTNSQQISSLKRNKGSEFSL 120
           LRALIALNCSLIFVTDGSIPGIKLSTY+RRLNNGSEVVKNDTNSQQISSLKRN+GSEFSL
Sbjct: 61  LRALIALNCSLIFVTDGSIPGIKLSTYKRRLNNGSEVVKNDTNSQQISSLKRNQGSEFSL 120

Query: 121 MIKEAKALGLALGIPCLDGLEEGEAQCALLNSELLCDGCFTSDSDVFLFGARTVYRDICL 180
           MIKEAKALGLALGIPCLDGLEEGEAQCALLNSELLCDGCFTSDSDVFLFGARTVYRDICL
Sbjct: 121 MIKEAKALGLALGIPCLDGLEEGEAQCALLNSELLCDGCFTSDSDVFLFGARTVYRDICL 180

Query: 181 GDGGHVVCYEMDDIEGQLGFGRNSMIALALLLGSDYTQGVYGMGRESARQIVKTVGDSTV 240
           GDGGHVVCYEMDDIE QLGFGRNSMI+LALLLGSDY+QGVYGMGRESA QIVKTVGDSTV
Sbjct: 181 GDGGHVVCYEMDDIERQLGFGRNSMISLALLLGSDYSQGVYGMGRESACQIVKTVGDSTV 240

Query: 241 LQKIASEGLSYTMKGKNSKKPGLPNSGDGQYMHKCEEFSQVIDAYLRPKCHSADSDAVTR 300
           LQKIASEGLS+T KGKNSKK GLPNSGDGQ+MHKCEEFSQVIDAYLRPKCHSADSDAVTR
Sbjct: 241 LQKIASEGLSFTKKGKNSKKSGLPNSGDGQFMHKCEEFSQVIDAYLRPKCHSADSDAVTR 300

Query: 301 VLIQHSFQRAKLQQFCAEFFAWPPEKTDEYILPKIAEKDLRRFANLRSNTSDLGFNIPLQ 360
           VLIQHSFQRAKLQQFCAEFFAWPPEKTDEYILPKIAEKDLRRFANLRSNT+ LGFNIPLQ
Sbjct: 301 VLIQHSFQRAKLQQFCAEFFAWPPEKTDEYILPKIAEKDLRRFANLRSNTAGLGFNIPLQ 360

Query: 361 EVPVSCPVSGIVKHRKVQGNECYEVSWKNLDGLSSSVVPADLLQSACPEMIVEFEEQRAQ 420
           EVPVSCPVSGIVKHRKVQGNECYEVSWKNLDGLSSSVVPADLLQSACPEMIVEFEEQRAQ
Sbjct: 361 EVPVSCPVSGIVKHRKVQGNECYEVSWKNLDGLSSSVVPADLLQSACPEMIVEFEEQRAQ 420

Query: 421 GRKPNKCRTKTKKSEATVAEIDERFRTLLLEIESESRAVRNLSQAPIVSENSNSATGLDD 480
           GRKPNKC+TKTKKSEATVAEID+RF+TLLLEIESESRAVRNLSQAPIVSENSNSATGLD+
Sbjct: 421 GRKPNKCKTKTKKSEATVAEIDKRFQTLLLEIESESRAVRNLSQAPIVSENSNSATGLDE 480

Query: 481 LQEIILDVEPTIVDHAHGTENVEVINLLSPSPAIQTRKVSKFQQGNCEKIDVIDLSDTEN 540
           LQ+II DVEPTIVDHAHGTE VEVINLLSPSPAIQTRKV KFQQGNCEKIDVIDLSDTEN
Sbjct: 481 LQDIIFDVEPTIVDHAHGTEIVEVINLLSPSPAIQTRKVPKFQQGNCEKIDVIDLSDTEN 540

Query: 541 DQSPEHERKARELRLFLASLKGK 564
           DQSPEHERKA ELRLFL SLKGK
Sbjct: 541 DQSPEHERKASELRLFLTSLKGK 563

[Close]

BLAST of CmoCh18G012650 vs. ExPASy TrEMBL
Match: A0A6J1CIZ7 (flap endonuclease GEN-like 2 OS=Momordica charantia OX=3673 GN=LOC111011427 PE=4 SV=1)

HSP 1 Score: 943.7 bits (2438), Expect = 3.4e-271
Identity = 472/566 (83.39%), Postives = 513/566 (90.64%), Query Frame = 0


Query: 1   MGVKNLWDILESCKKTLPLHRLQNKRLCIDLSCWMVQLQNVSKSHSCLNQKIYLKGLFHR 60
           MGVKNLWDILESCKKTLPLHRLQNKRLCIDLSCWMVQLQNVSKSHSCL++KIYL+GLFHR
Sbjct: 1   MGVKNLWDILESCKKTLPLHRLQNKRLCIDLSCWMVQLQNVSKSHSCLHKKIYLQGLFHR 60

Query: 61  LRALIALNCSLIFVTDGSIPGIKLSTYRRRLNNGSEVVKNDTNSQQISSLKRNKGSEFSL 120
           LRALIALNCS+IFVTDGSIPGIKLSTYRRRLNNGSEV +ND NSQQI SLKRNKGSEFSL
Sbjct: 61  LRALIALNCSIIFVTDGSIPGIKLSTYRRRLNNGSEVAQNDANSQQIPSLKRNKGSEFSL 120

Query: 121 MIKEAKALGLALGIPCLDGLEEGEAQCALLNSELLCDGCFTSDSDVFLFGARTVYRDICL 180
           MIKEAKALGLALGIPCLDG+EE EAQCALLNSE LCDGCFTSDSDVFLFGARTVYRDICL
Sbjct: 121 MIKEAKALGLALGIPCLDGIEEAEAQCALLNSESLCDGCFTSDSDVFLFGARTVYRDICL 180

Query: 181 GDGGHVVCYEMDDIEGQLGFGRNSMIALALLLGSDYTQGVYGMGRESARQIVKTVGDSTV 240
           GDGGHVVCYEM DIE QLGFGRNSM+ LALLLGSDY+QGVYG+GRESA QIVK VGD  V
Sbjct: 181 GDGGHVVCYEMADIERQLGFGRNSMVTLALLLGSDYSQGVYGLGRESACQIVKAVGDGAV 240

Query: 241 LQKIASEGLSYTMKGKNSKKPGLPNSGDGQYMHKCEEFSQVIDAYLRPKCHSADSDAVTR 300
           LQKIASEGLS+T KGKNSKK GL  SGDGQ +HKC+ F +VIDAYL+PKCHSADSDAVTR
Sbjct: 241 LQKIASEGLSFTKKGKNSKKQGLSKSGDGQCLHKCDHFLKVIDAYLKPKCHSADSDAVTR 300

Query: 301 VLIQHSFQRAKLQQFCAEFFAWPPEKTDEYILPKIAEKDLRRFANLRSNTSDLGFNIPLQ 360
           VL+QH FQR KLQQ CAE F WPPEKTDEYILPKIAE+DLRRFANLRSNTS LGFNIPLQ
Sbjct: 301 VLVQHPFQRIKLQQICAELFTWPPEKTDEYILPKIAERDLRRFANLRSNTSALGFNIPLQ 360

Query: 361 EVPVSCPVSGIVKHRKVQGNECYEVSWKNLDGLSSSVVPADLLQSACPEMIVEFEEQRAQ 420
           E+P +CPVSGIVKHRKVQG++C+EVSWK+L+GL SS+VPADLLQSACPEMIVEFEEQ+AQ
Sbjct: 361 EIPANCPVSGIVKHRKVQGSDCFEVSWKDLNGLDSSIVPADLLQSACPEMIVEFEEQKAQ 420

Query: 421 GRKPNKCRTKTKKSEATVAEIDERFRTLLLEIESESRAVR--NLSQAPIVSENSNSATGL 480
           G K N+ +TKTKKSEA VAEID+R +TLLL+IESESRAV   +LS  PIVSE+S SATG+
Sbjct: 421 GMKQNRRKTKTKKSEAAVAEIDKRLQTLLLQIESESRAVHSLSLSHTPIVSESSTSATGV 480

Query: 481 DDL-QEIILDVEPTIVDHAHGTENVEVINLLSPSPAIQTRKVSKFQQGNCEKIDVIDLSD 540
           D++ QE  LDVEPTI+D    TE +EVI+LLSPSPAIQT KVSKFQQ N EKIDVIDLSD
Sbjct: 481 DEMNQEDFLDVEPTIIDRTRSTERIEVIDLLSPSPAIQTSKVSKFQQENSEKIDVIDLSD 540

Query: 541 TENDQSPEHERKARELRLFLASLKGK 564
            E+D+SPEHERKARELR FL SL+ K
Sbjct: 541 AESDRSPEHERKARELRAFLVSLRSK 566

[Close]

BLAST of CmoCh18G012650 vs. ExPASy TrEMBL
Match: A0A0A0L8N4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G182000 PE=4 SV=1)

HSP 1 Score: 884.8 bits (2285), Expect = 1.9e-253
Identity = 448/566 (79.15%), Postives = 491/566 (86.75%), Query Frame = 0


Query: 1   MGVKNLWDILESCKKTLPLHRLQNKRLCIDLSCWMVQLQNVSKSHSCLNQKIYLKGLFHR 60
           MGVKNLWDILESCKKTLPLHRLQNKRLCIDLSCW+V+L +VSKSH   N K YLKGLF+R
Sbjct: 1   MGVKNLWDILESCKKTLPLHRLQNKRLCIDLSCWIVELSSVSKSHCHSNSKFYLKGLFYR 60

Query: 61  LRALIALNCSLIFVTDGSIPGIKLSTYRRRLNNGSEVVKNDTNSQQISSLKRNKGSEFSL 120
           LR LIALNCSLIFVTDGSIPGIKLSTYRRRLNNG+EV + D N QQI SLKRNKGSEFSL
Sbjct: 61  LRTLIALNCSLIFVTDGSIPGIKLSTYRRRLNNGNEVAQTDANPQQICSLKRNKGSEFSL 120

Query: 121 MIKEAKALGLALGIPCLDGLEEGEAQCALLNSELLCDGCFTSDSDVFLFGARTVYRDICL 180
           MIKEA+ALGLALGIPCLD +EE EAQCALLNSELLCDGCFTSDSD FLFGARTVYRDICL
Sbjct: 121 MIKEAQALGLALGIPCLDAVEEAEAQCALLNSELLCDGCFTSDSDAFLFGARTVYRDICL 180

Query: 181 GDGGHVVCYEMDDIEGQLGFGRNSMIALALLLGSDYTQGVYGMGRESARQIVKTVGDSTV 240
           GD GHVVCYEMDDIE +LGFGRNSMI  ALLLGSDY+QGVYGMGRESA Q+VK VGD  V
Sbjct: 181 GDSGHVVCYEMDDIETRLGFGRNSMITFALLLGSDYSQGVYGMGRESACQLVKAVGDGAV 240

Query: 241 LQKIASEGLSYTMKGKNSKKPGLPNSGDGQYMHKCEEFSQVIDAYLRPKCHSADSDAVTR 300
           LQKI SEGL+   KG+NSKK GLP SG G YM KC+EFS+VIDAYL+PKCHSADS+AVTR
Sbjct: 241 LQKITSEGLALAKKGENSKKQGLPKSGHGHYMLKCDEFSEVIDAYLKPKCHSADSEAVTR 300

Query: 301 VLIQHSFQRAKLQQFCAEFFAWPPEKTDEYILPKIAEKDLRRFANLRSNTSDLGFNIPLQ 360
           VL QH FQ  KLQQ CAEFF W PEKTDE ILPKIAE+DLRRFAN+RS TS+LGFNIPLQ
Sbjct: 301 VLDQHPFQHVKLQQICAEFFEWSPEKTDENILPKIAERDLRRFANIRSRTSELGFNIPLQ 360

Query: 361 EVPVSCPVSGIVKHRKVQGNECYEVSWKNLDGLSSSVVPADLLQSACPEMIVEFEEQRAQ 420
           E+PVSCP+SGIVKHRKVQGNECYEVSWKN+ GL+ SVV ADLLQ ACPEMI+EFEE+RA 
Sbjct: 361 EIPVSCPISGIVKHRKVQGNECYEVSWKNI-GLNLSVVSADLLQRACPEMIIEFEEKRAD 420

Query: 421 GRKPNKCRTKTKKSEATVAEIDERFRTLLLEIESESRAVRNLSQAPIVSENSNSATGLDD 480
           G+K NK +TKTKKS A +AEID+R +TLLLEIESESR V N+S  PI  ++  S TG+ +
Sbjct: 421 GKKQNKGKTKTKKSAAVMAEIDKRLKTLLLEIESESRVVHNISHVPI--DSKTSGTGVHE 480

Query: 481 L-QEIILDVEPTIVDHAH--GTENVEVINLLSPSPAIQTRKVSKFQQGNCEKIDVIDLSD 540
           L QE+ L++EP IVDHA    T+ +EVI+LLSPSPAIQTR VSKFQQ   +KIDVIDLSD
Sbjct: 481 LNQEVFLNIEPIIVDHARSCSTKRIEVIDLLSPSPAIQTRNVSKFQQKTSQKIDVIDLSD 540

Query: 541 TENDQSPEHERKARELRLFLASLKGK 564
           TE DQSPEHERKARELR FLASLKGK
Sbjct: 541 TEIDQSPEHERKARELRSFLASLKGK 563

[Close]

BLAST of CmoCh18G012650 vs. ExPASy TrEMBL
Match: A0A1S3AYA2 (flap endonuclease GEN-like 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484071 PE=4 SV=1)

HSP 1 Score: 876.3 bits (2263), Expect = 6.8e-251
Identity = 445/568 (78.35%), Postives = 495/568 (87.15%), Query Frame = 0


Query: 1   MGVKNLWDILESCKKTLPLHRLQNKRLCIDLSCWMVQLQNVSKSHSCLNQKIYLKGLFHR 60
           MGVKNLWDILESCKKTLPLHRLQNKRLCIDLSCW+VQL +VSKSH   N K YL+GLF+R
Sbjct: 1   MGVKNLWDILESCKKTLPLHRLQNKRLCIDLSCWIVQLSSVSKSHCHSNSKFYLQGLFYR 60

Query: 61  LRALIALNCSLIFVTDGSIPGIKLSTYRRRLNNGSE--VVKNDTNSQQISSLKRNKGSEF 120
           LR LIALNCSLIFVTDGSIPGIK+STYRRRLNNG+E  V + D N QQI SLKRN GSEF
Sbjct: 61  LRTLIALNCSLIFVTDGSIPGIKVSTYRRRLNNGNEKQVAQTDANPQQICSLKRNMGSEF 120

Query: 121 SLMIKEAKALGLALGIPCLDGLEEGEAQCALLNSELLCDGCFTSDSDVFLFGARTVYRDI 180
           SLMIKEA+ALGLALGIPCLD +EE EAQCALLNSELLCDGCFTSDSD FLFGARTVYRDI
Sbjct: 121 SLMIKEAQALGLALGIPCLDAVEEAEAQCALLNSELLCDGCFTSDSDAFLFGARTVYRDI 180

Query: 181 CLGDGGHVVCYEMDDIEGQLGFGRNSMIALALLLGSDYTQGVYGMGRESARQIVKTVGDS 240
           CLGD GHVVCYE+DDI+ +LGFGRNSMI  ALLLGSDY+QGVYGMGRESA Q+VK VGD 
Sbjct: 181 CLGDSGHVVCYELDDIKTRLGFGRNSMITFALLLGSDYSQGVYGMGRESACQLVKAVGDV 240

Query: 241 TVLQKIASEGLSYTMKGKNSKKPGLPNSGDGQYMHKCEEFSQVIDAYLRPKCHSADSDAV 300
            VLQKI SEGL+   KGKNSKK  LP SG+GQY+ KC+EFS+VIDAYL+PKCHSADS+AV
Sbjct: 241 AVLQKITSEGLALAKKGKNSKKQELPKSGNGQYILKCDEFSEVIDAYLKPKCHSADSEAV 300

Query: 301 TRVLIQHSFQRAKLQQFCAEFFAWPPEKTDEYILPKIAEKDLRRFANLRSNTSDLGFNIP 360
           +RVL+QH FQR KLQQ CAEFF WPP+KTDE ILP IAE+DLRRFAN+RS TS+LGFNIP
Sbjct: 301 SRVLVQHPFQRVKLQQICAEFFGWPPDKTDEKILPWIAERDLRRFANIRSRTSELGFNIP 360

Query: 361 LQEVPVSCPVSGIVKHRKVQGNECYEVSWKNLDGLSSSVVPADLLQSACPEMIVEFEEQR 420
           LQE+PVSCPVSGIVKHRKVQGNECYEVSWKN+DGL  SVV ADLLQSACPEMIVEFEE+R
Sbjct: 361 LQEIPVSCPVSGIVKHRKVQGNECYEVSWKNIDGL-ISVVSADLLQSACPEMIVEFEEKR 420

Query: 421 AQGRKPNKCRTKTKKSEATVAEIDERFRTLLLEIESESRAVRNLSQAPIVSENSNSATGL 480
           A+G+K NK +TKTKKS A +AEID+R +TLLLEIESESRAV N+S  PI  ++  S TG+
Sbjct: 421 AEGKKQNKGKTKTKKSAAAMAEIDKRLQTLLLEIESESRAVHNISHLPI--DSKTSGTGV 480

Query: 481 DDL-QEIILDVEPTIVDHAH--GTENVEVINLLSPSPAIQTRKVSKFQQGNCEKIDVIDL 540
            +L QE+ L++EP IVDHA    T+ +EVI+LLSPSPAI T +VSKFQQ   +KIDVIDL
Sbjct: 481 HELNQEVFLNIEPIIVDHARSCSTKRIEVIDLLSPSPAIHTHRVSKFQQKTSQKIDVIDL 540

Query: 541 SDTENDQSPEHERKARELRLFLASLKGK 564
           SDTE DQSPEHERKARELR F+ASLKGK
Sbjct: 541 SDTEIDQSPEHERKARELRSFIASLKGK 565

[Close]

BLAST of CmoCh18G012650 vs. TAIR 10
Match: AT3G48900.2 (single-stranded DNA endonuclease family protein )

HSP 1 Score: 578.6 bits (1490), Expect = 5.6e-165
Identity = 304/598 (50.84%), Postives = 415/598 (69.40%), Query Frame = 0


Query: 1   MGVKNLWDILESCKKTLPLHRLQNKRLCIDLSCWMVQLQNVSKSHSCLNQKIYLKGLFHR 60
           MGVK LWD+LE CKKT PL  LQNKR+C+DLSCWMV+L  V+KS+    +K+YL+G FHR
Sbjct: 1   MGVKYLWDVLEPCKKTFPLDHLQNKRVCVDLSCWMVELHKVNKSYCATKEKVYLRGFFHR 60

Query: 61  LRALIALNCSLIFVTDGSIPGIKLSTYRRRLNNGSEVVKNDTNSQQISSLKRNKGSEFSL 120
           LRALIALNCS+I V+DG+IPGIK+ TY+RRL    E+  +     + +SLKRN GSEFS 
Sbjct: 61  LRALIALNCSIILVSDGAIPGIKVPTYKRRLKARFEIADDGVEPSKETSLKRNMGSEFSC 120

Query: 121 MIKEAKALGLALGIPCLDGLEEGEAQCALLNSELLCDGCFTSDSDVFLFGARTVYRDICL 180
           +IKEAK +   LGI CLDG+EE EAQCALLNSE LCD CF+ DSD+FLFGA+TVYR+ICL
Sbjct: 121 IIKEAKVIASTLGILCLDGIEEAEAQCALLNSESLCDACFSFDSDIFLFGAKTVYREICL 180

Query: 181 GDGGHVVCYEMDDIEGQLGFGRNSMIALALLLGSDYTQGVYGMGRESARQIVKTVGDSTV 240
           G+GG+VVCYEMDDI+ +LG GRNS+IALALLLGSDY+QGV G+ +E A ++V+++GD+ +
Sbjct: 181 GEGGYVVCYEMDDIKKKLGLGRNSLIALALLLGSDYSQGVRGLRQEKACELVRSIGDNVI 240

Query: 241 LQKIASEGLSYTMKGKNSKKPGLPN-------------SGDGQYMHKCEEFSQVIDAYLR 300
           L+K+ASEGLS+  K + SKK   P+             +G+ +   + EE  QVIDA++ 
Sbjct: 241 LEKVASEGLSFAEKPRKSKKQVRPSVCSKKGTLPLVVINGNNRDPERLEEIKQVIDAFMN 300

Query: 301 PKCHSADSDAVTRVLIQHSFQRAKLQQFCAEFFAWPPEKTDEYILPKIAEKDLRRFANLR 360
           PKCH ADS+ V+R L + SFQR KLQ+ C +FF WPPEKTDEYILPK+AE++LRRFANL+
Sbjct: 301 PKCHQADSNTVSRALAEFSFQRTKLQEICHQFFEWPPEKTDEYILPKVAERNLRRFANLQ 360

Query: 361 SNTSDLGFNIPLQ--EVPVSCPVSGIVKHRKVQGNECYEVSWKNLDGLSSSVVPADLLQS 420
           S ++++  N+PL   ++P  CPVS I+K RKVQG EC+EVSW +L+GL SS+VPADL++ 
Sbjct: 361 SRSTEVEVNLPLHKPQMPEKCPVSEIIKTRKVQGRECFEVSWNDLEGLESSIVPADLVER 420

Query: 421 ACPEMIVEFEEQRAQGRKPNKCRTKTKKSEATVAE---IDERFRTLLLEIESESRAVRN- 480
           ACPE I+EF+E+ A  +K  K + K K++ +       ++       L++ S S   R+ 
Sbjct: 421 ACPEKIIEFKEKMAAKKKKPKPKQKQKETSSPTKSSSLVELSLELQHLDLNSTSLVSRST 480

Query: 481 LSQAPIVSENSNSATGLDDLQEIILDVEPTIVDHAHGTEN--------------VEVINL 540
           L +A   +E  NS     D   +I   +    ++A    +               EVI+L
Sbjct: 481 LEEAEQENEQQNSKK--HDYLRLIDSPDRENCNNAWSNRDRLGVGMSSFPLYPETEVIDL 540

Query: 541 LSPSPAIQTRKVSKF---QQGNCEKID-VIDLSDTENDQSPEHERKARELRLFLASLK 562
           +SP P  ++R VS+    Q+ +  +++ VI+LSD+E D   EH +KARELR+FL +++
Sbjct: 541 ISPCPEARSRSVSRSYQEQKSHDHQLETVIELSDSETDDE-EHCKKARELRIFLQNIR 595

[Close]

BLAST of CmoCh18G012650 vs. TAIR 10
Match: AT3G48900.1 (single-stranded DNA endonuclease family protein )

HSP 1 Score: 443.4 bits (1139), Expect = 2.8e-124
Identity = 241/504 (47.82%), Postives = 339/504 (67.26%), Query Frame = 0


Query: 95  SEVVKNDTNSQQISSLKRNKGSEFSLMIKEAKALGLALGIPCLDGLEEGEAQCALLNSEL 154
           S++  +     + +SLKRN GSEFS +IKEAK +   LGI CLDG+EE EAQCALLNSE 
Sbjct: 31  SQIADDGVEPSKETSLKRNMGSEFSCIIKEAKVIASTLGILCLDGIEEAEAQCALLNSES 90

Query: 155 LCDGCFTSDSDVFLFGARTVYRDICLGDGGHVVCYEMDDIEGQLGFGRNSMIALALLLGS 214
           LCD CF+ DSD+FLFGA+TVYR+ICLG+GG+VVCYEMDDI+ +LG GRNS+IALALLLGS
Sbjct: 91  LCDACFSFDSDIFLFGAKTVYREICLGEGGYVVCYEMDDIKKKLGLGRNSLIALALLLGS 150

Query: 215 DYTQGVYGMGRESARQIVKTVGDSTVLQKIASEGLSYTMKGKNSKKPGLPN--------- 274
           DY+QGV G+ +E A ++V+++GD+ +L+K+ASEGLS+  K + SKK   P+         
Sbjct: 151 DYSQGVRGLRQEKACELVRSIGDNVILEKVASEGLSFAEKPRKSKKQVRPSVCSKKGTLP 210

Query: 275 ----SGDGQYMHKCEEFSQVIDAYLRPKCHSADSDAVTRVLIQHSFQRAKLQQFCAEFFA 334
               +G+ +   + EE  QVIDA++ PKCH ADS+ V+R L + SFQR KLQ+ C +FF 
Sbjct: 211 LVVINGNNRDPERLEEIKQVIDAFMNPKCHQADSNTVSRALAEFSFQRTKLQEICHQFFE 270

Query: 335 WPPEKTDEYILPKIAEKDLRRFANLRSNTSDLGFNIPLQ--EVPVSCPVSGIVKHRKVQG 394
           WPPEKTDEYILPK+AE++LRRFANL+S ++++  N+PL   ++P  CPVS I+K RKVQG
Sbjct: 271 WPPEKTDEYILPKVAERNLRRFANLQSRSTEVEVNLPLHKPQMPEKCPVSEIIKTRKVQG 330

Query: 395 NECYEVSWKNLDGLSSSVVPADLLQSACPEMIVEFEEQRAQGRKPNKCRTKTKKSEATVA 454
            EC+EVSW +L+GL SS+VPADL++ ACPE I+EF+E+ A  +K  K + K K++ +   
Sbjct: 331 RECFEVSWNDLEGLESSIVPADLVERACPEKIIEFKEKMAAKKKKPKPKQKQKETSSPTK 390

Query: 455 E---IDERFRTLLLEIESESRAVRN-LSQAPIVSENSNSATGLDDLQEIILDVEPTIVDH 514
               ++       L++ S S   R+ L +A   +E  NS     D   +I   +    ++
Sbjct: 391 SSSLVELSLELQHLDLNSTSLVSRSTLEEAEQENEQQNSKK--HDYLRLIDSPDRENCNN 450

Query: 515 AHGTEN--------------VEVINLLSPSPAIQTRKVSKF---QQGNCEKID-VIDLSD 562
           A    +               EVI+L+SP P  ++R VS+    Q+ +  +++ VI+LSD
Sbjct: 451 AWSNRDRLGVGMSSFPLYPETEVIDLISPCPEARSRSVSRSYQEQKSHDHQLETVIELSD 510

[Close]

BLAST of CmoCh18G012650 vs. TAIR 10
Match: AT1G01880.2 (5'-3' exonuclease family protein )

HSP 1 Score: 122.9 bits (307), Expect = 8.4e-28
Identity = 99/275 (36.00%), Postives = 136/275 (49.45%), Query Frame = 0


Query: 1   MGV-KNLWDILESCKKTLPLHRLQNKRLCIDLSCWMVQLQNVSKSHSCLNQKIYLKGLFH 60
           MGV  N WD+L    +      L+NKR+ +DLS W+VQ +   K       K +L+  F 
Sbjct: 1   MGVGGNFWDLLRPYAQQQGFDFLRNKRVAVDLSFWIVQHETAVKGFVL---KPHLRLTFF 60

Query: 61  RLRALIA-LNCSLIFVTDGSIPGIKLSTYRRRLNNGSEVVKNDTNSQQI----SSLKRNK 120
           R   L +      +FV DG+   +K      R    S +   DT +  +     S++RNK
Sbjct: 61  RTINLFSKFGAYPVFVVDGTPSPLKSQARISRFFRSSGI---DTCNLPVIKDGVSVERNK 120

Query: 121 GSEFSLMIKEAKALGLALGIPCLDGLEEGEAQCALLNSELLCDGCFTSDSDVFLFGARTV 180
              FS  ++E + L L LGIP L    E EA CA LNS+   D C T DSD FLFGA  V
Sbjct: 121 --LFSEWVRECELLEL-LGIPVLKANGEAEALCAQLNSQGFVDACITPDSDAFLFGAMCV 180

Query: 181 YRDICLGDGGHVVCYEMDDIEGQLGFGRNSMIALALLLGSDY-TQGVYGMGRESARQIVK 240
            +DI         CY M  IE  LG  R  +IA++LL+G+DY + GV G+G + A +IV+
Sbjct: 181 IKDIKPNSREPFECYHMSHIESGLGLKRKHLIAISLLVGNDYDSGGVLGIGVDKALRIVR 240

Query: 241 TVGDSTVLQKIASEGLSYTMKGKNSKKPGLPNSGD 269
              +  VL+++   G      G     PG   SGD
Sbjct: 241 EFSEDQVLERLQDIG-----NGLQPAVPGGIKSGD 261

[Close]

BLAST of CmoCh18G012650 vs. TAIR 10
Match: AT3G28030.1 (5'-3' exonuclease family protein )

HSP 1 Score: 122.9 bits (307), Expect = 8.4e-28
Identity = 99/290 (34.14%), Postives = 130/290 (44.83%), Query Frame = 0


Query: 110  LKRNKGSEFSLMIKEAKALGLALGIPCLDGLEEGEAQCALLNSELLCDGCFTSDSDVFLF 169
            L+RN  S  S M  E + L    GIP +    E EAQCA +    L DG  T DSDVFLF
Sbjct: 914  LERNAESVSSEMFAECQELLQIFGIPYIIAPMEAEAQCAFMEQSNLVDGIVTDDSDVFLF 973

Query: 170  GARTVYRDICLGDGGHVVCYEMDDIEGQLGFGRNSMIALALLLGSDYTQGVYGMGRESAR 229
            GAR+VY++I   D  +V  Y M DIE +LG  R+ +I +A+LLGSDYT+G+ G+G  +A 
Sbjct: 974  GARSVYKNI-FDDRKYVETYFMKDIEKELGLSRDKIIRMAMLLGSDYTEGISGIGIVNAI 1033

Query: 230  QIVKTVGDSTVLQKIAS--EGLSYTMKGKNSKKPG----------LPNSG--DGQYMHKC 289
            ++V    +   LQK     E    T+ GK   K G          + N G   G      
Sbjct: 1034 EVVTAFPEEDGLQKFREWVESPDPTILGKTDAKTGSKVKKRGSASVDNKGIISGASTDDT 1093

Query: 290  EEFSQ-----------------------VIDAYLRPKCHSADSDAVTRVLIQHSFQRAKL 349
            EE  Q                       VI AYL P+      D  T          + L
Sbjct: 1094 EEIKQIFMDQHRKVSKNWHIPLTFPSEAVISAYLNPQV-----DLSTEKFSWGKPDLSVL 1153

HSP 2 Score: 61.6 bits (148), Expect = 2.3e-09
Identity = 41/130 (31.54%), Postives = 64/130 (49.23%), Query Frame = 0


Query: 1   MGVKNLWDILESCKKTLPLHRLQNKRLCIDLSCWMVQ-LQNVSKSHSCLNQKIYLKGLFH 60
           MGV+ LW++L    + + +  L NKRL ID S WMVQ ++ +      + Q  +L G F 
Sbjct: 1   MGVQGLWELLAPVGRRVSVETLANKRLAIDASIWMVQFIKAMRDEKGDMVQNAHLIGFFR 60

Query: 61  RLRALIALNCSLIFVTDGSIPGIKLSTY---RRRLNNGSEVVKNDTNSQQISSLKRNKGS 120
           R+  L+ L    IFV DG+ P +K  T    RR+  N    ++       ++ LK  +  
Sbjct: 61  RICKLLFLRTKPIFVFDGATPALKRRTVIARRRQRENAQTKIRKTAEKLLLNRLKDIRLK 120

Query: 121 EFSLMIKEAK 127
           E +  IK  +
Sbjct: 121 EQAKDIKNQR 130

[Close]

BLAST of CmoCh18G012650 vs. TAIR 10
Match: AT1G01880.1 (5'-3' exonuclease family protein )

HSP 1 Score: 122.1 bits (305), Expect = 1.4e-27
Identity = 98/275 (35.64%), Postives = 134/275 (48.73%), Query Frame = 0


Query: 1   MGV-KNLWDILESCKKTLPLHRLQNKRLCIDLSCWMVQLQNVSKSHSCLNQKIYLKGLFH 60
           MGV  N WD+L    +      L+NKR+ +DLS W+VQ +   K       K +L+  F 
Sbjct: 1   MGVGGNFWDLLRPYAQQQGFDFLRNKRVAVDLSFWIVQHETAVKGFVL---KPHLRLTFF 60

Query: 61  RLRALIA-LNCSLIFVTDGSIPGIKLSTYRRRLNNGSEVVKNDTNSQQI----SSLKRNK 120
           R   L +      +FV DG+   +K      R    S +   DT +  +     S++RNK
Sbjct: 61  RTINLFSKFGAYPVFVVDGTPSPLKSQARISRFFRSSGI---DTCNLPVIKDGVSVERNK 120

Query: 121 GSEFSLMIKEAKALGLALGIPCLDGLEEGEAQCALLNSELLCDGCFTSDSDVFLFGARTV 180
              FS  ++E   L   LGIP L    E EA CA LNS+   D C T DSD FLFGA  V
Sbjct: 121 --LFSEWVRECVELLELLGIPVLKANGEAEALCAQLNSQGFVDACITPDSDAFLFGAMCV 180

Query: 181 YRDICLGDGGHVVCYEMDDIEGQLGFGRNSMIALALLLGSDY-TQGVYGMGRESARQIVK 240
            +DI         CY M  IE  LG  R  +IA++LL+G+DY + GV G+G + A +IV+
Sbjct: 181 IKDIKPNSREPFECYHMSHIESGLGLKRKHLIAISLLVGNDYDSGGVLGIGVDKALRIVR 240

Query: 241 TVGDSTVLQKIASEGLSYTMKGKNSKKPGLPNSGD 269
              +  VL+++   G      G     PG   SGD
Sbjct: 241 EFSEDQVLERLQDIG-----NGLQPAVPGGIKSGD 262

The following BLAST results are available for this feature:

BLAST of CmoCh18G012650 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M2Z3	7.9e-164	50.84	Single-strand DNA endonuclease 1 OS=Arabidopsis thaliana OX=3702 GN=SEND1 PE=1 S...	[more]
Q8W5R1	5.0e-158	54.31	Single-strand DNA endonuclease 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SEN...	[more]
Q17RS7	3.0e-38	27.36	Flap endonuclease GEN homolog 1 OS=Homo sapiens OX=9606 GN=GEN1 PE=1 SV=2	[more]
Q8BMI4	3.3e-37	25.91	Flap endonuclease GEN homolog 1 OS=Mus musculus OX=10090 GN=Gen1 PE=1 SV=2	[more]
Q9ATY5	1.2e-26	34.14	DNA repair protein UVH3 OS=Arabidopsis thaliana OX=3702 GN=UVH3 PE=2 SV=1	[more]

BLAST of CmoCh18G012650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FZ58	0.0e+00	100.00	flap endonuclease GEN-like 2 OS=Cucurbita moschata OX=3662 GN=LOC111449235 PE=4 ...	[more]
A0A6J1HZ11	0.0e+00	96.09	flap endonuclease GEN-like 2 OS=Cucurbita maxima OX=3661 GN=LOC111467522 PE=4 SV...	[more]
A0A6J1CIZ7	3.4e-271	83.39	flap endonuclease GEN-like 2 OS=Momordica charantia OX=3673 GN=LOC111011427 PE=4...	[more]
A0A0A0L8N4	1.9e-253	79.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G182000 PE=4 SV=1	[more]
A0A1S3AYA2	6.8e-251	78.35	flap endonuclease GEN-like 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484071 ...	[more]

BLAST of CmoCh18G012650 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G48900.2	5.6e-165	50.84	single-stranded DNA endonuclease family protein	[more]
AT3G48900.1	2.8e-124	47.82	single-stranded DNA endonuclease family protein	[more]
AT1G01880.2	8.4e-28	36.00	5'-3' exonuclease family protein	[more]
AT3G28030.1	8.4e-28	34.14	5'-3' exonuclease family protein	[more]
AT1G01880.1	1.4e-27	35.64	5'-3' exonuclease family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006084	XPG/Rad2 endonuclease	PRINTS	PR00853	XPGRADSUPER	coord: 24..38 score: 29.58 coord: 129..146 score: 35.42 coord: 71..90 score: 34.84 coord: 150..170 score: 37.35 coord: 205..220 score: 46.09
IPR006084	XPG/Rad2 endonuclease	PANTHER	PTHR11081	FLAP ENDONUCLEASE FAMILY MEMBER	coord: 1..469
IPR006085	XPG, N-terminal	SMART	SM00485	xpgn3	coord: 1..97 e-value: 1.1E-11 score: 54.8
IPR006085	XPG, N-terminal	PFAM	PF00752	XPG_N	coord: 1..92 e-value: 7.4E-12 score: 45.6
IPR006086	XPG-I domain	SMART	SM00484	xpgineu	coord: 130..200 e-value: 3.7E-12 score: 56.4
IPR006086	XPG-I domain	PFAM	PF00867	XPG_I	coord: 132..215 e-value: 2.0E-18 score: 66.6
None	No IPR available	GENE3D	2.40.50.40		coord: 366..433 e-value: 3.6E-7 score: 31.8
None	No IPR available	GENE3D	1.10.150.20		coord: 201..257 e-value: 1.4E-7 score: 33.4
None	No IPR available	GENE3D	3.40.50.1010		coord: 2..199 e-value: 5.3E-39 score: 136.1
None	No IPR available	PANTHER	PTHR11081:SF54	FLAP ENDONUCLEASE GEN HOMOLOG 1	coord: 1..469
None	No IPR available	CDD	cd00024	CD_CSD	coord: 368..416 e-value: 1.71182E-5 score: 40.1529
None	No IPR available	CDD	cd09900	H3TH_XPG-like	coord: 203..246 e-value: 5.66726E-9 score: 50.1764
None	No IPR available	CDD	cd09869	PIN_GEN1	coord: 2..198 e-value: 8.11408E-79 score: 245.977
IPR000953	Chromo/chromo shadow domain	PROSITE	PS50013	CHROMO_2	coord: 366..426 score: 8.937501
IPR016197	Chromo-like domain superfamily	SUPERFAMILY	54160	Chromo domain-like	coord: 368..424
IPR029060	PIN-like domain superfamily	SUPERFAMILY	88723	PIN domain-like	coord: 3..215
IPR036279	5'-3' exonuclease, C-terminal domain superfamily	SUPERFAMILY	47807	5' to 3' exonuclease, C-terminal subdomain	coord: 200..347

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G012650.1	CmoCh18G012650.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
molecular_function	GO:0017108	5'-flap endonuclease activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0004518	nuclease activity