CmoCh17G008950.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh17G008950.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Clp R domain-containing protein
Location	Cmo_Chr17: 8106117 .. 8106380 (+)
Sequence length	264
RNA-Seq Expression	CmoCh17G008950.1
Synteny	CmoCh17G008950.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGATGGAGATTAGGCATTTGGAAGGAATGGCTGAGACTGCAGCCGTGTTCCTCCTTGTGCAGATCCTGGTTTATCTAATTCTCTCTAAATCTTCCCATGTCTTCTCTAAGAACACGAAGAGGTCTCTTAGTTTCAGACAGGTCCGATCTCTGAGTATCCGTCGGATTATGGCAGCTCTCTCCGATTTCCCCTCCGGCACCGGCGACCCAGACGAAAGTCGTGGGGAATGTGGAACCATGTTTGATGAAGGCAGTTCTTAA

mRNA sequence

ATGATGATGGAGATTAGGCATTTGGAAGGAATGGCTGAGACTGCAGCCGTGTTCCTCCTTGTGCAGATCCTGGTTTATCTAATTCTCTCTAAATCTTCCCATGTCTTCTCTAAGAACACGAAGAGGTCTCTTAGTTTCAGACAGGTCCGATCTCTGAGTATCCGTCGGATTATGGCAGCTCTCTCCGATTTCCCCTCCGGCACCGGCGACCCAGACGAAAGTCGTGGGGAATGTGGAACCATGTTTGATGAAGGCAGTTCTTAA

Coding sequence (CDS)

ATGATGATGGAGATTAGGCATTTGGAAGGAATGGCTGAGACTGCAGCCGTGTTCCTCCTTGTGCAGATCCTGGTTTATCTAATTCTCTCTAAATCTTCCCATGTCTTCTCTAAGAACACGAAGAGGTCTCTTAGTTTCAGACAGGTCCGATCTCTGAGTATCCGTCGGATTATGGCAGCTCTCTCCGATTTCCCCTCCGGCACCGGCGACCCAGACGAAAGTCGTGGGGAATGTGGAACCATGTTTGATGAAGGCAGTTCTTAA

Protein sequence

MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRIMAALSDFPSGTGDPDESRGECGTMFDEGSS

Homology

[Close]

BLAST of CmoCh17G008950.1 vs. ExPASy TrEMBL
Match: A0A6J1GRF7 (uncharacterized protein LOC111456452 OS=Cucurbita moschata OX=3662 GN=LOC111456452 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 3.5e-37
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRIMAA 60
          MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRIMAA
Sbjct: 1  MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRIMAA 60

Query: 61 LSDFPSGTGDPDESRGECGTMFDEGSS 88
          LSDFPSGTGDPDESRGECGTMFDEGSS
Sbjct: 61 LSDFPSGTGDPDESRGECGTMFDEGSS 87

[Close]

BLAST of CmoCh17G008950.1 vs. ExPASy TrEMBL
Match: A0A6J1JXQ0 (uncharacterized protein LOC111488440 OS=Cucurbita maxima OX=3661 GN=LOC111488440 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 7.0e-30
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 1  MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRIMAA 60
          MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRIMAA
Sbjct: 1  MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRIMAA 60

Query: 61 LSDFPSGTGDPDESRG 77
          LSDFPSG GDPDESRG
Sbjct: 61 LSDFPSGAGDPDESRG 76

[Close]

BLAST of CmoCh17G008950.1 vs. ExPASy TrEMBL
Match: A0A6J1D0M4 (uncharacterized protein LOC111016209 OS=Momordica charantia OX=3673 GN=LOC111016209 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 6.6e-20
Identity = 67/95 (70.53%), Postives = 71/95 (74.74%), Query Frame = 0


Query: 1  MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRIMAA 60
          M MEI  LEG+  TAAVF LVQILVYLILSKSS VFSKNTKRSLSFR VRSLSIRRI+AA
Sbjct: 2  MTMEIIPLEGIVATAAVFFLVQILVYLILSKSSDVFSKNTKRSLSFRHVRSLSIRRILAA 61

Query: 61 LSDFPSG--TGDPDES------RGECGTMFDEGSS 88
          LSD PSG     P+ES       GEC  MF +GSS
Sbjct: 62 LSDVPSGGEPSPPNESPSPFSIGGECAAMFRDGSS 96

[Close]

BLAST of CmoCh17G008950.1 vs. ExPASy TrEMBL
Match: A0A1U7YVL7 (uncharacterized protein LOC104587448 OS=Nelumbo nucifera OX=4432 GN=LOC104587448 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 9.5e-11
Identity = 44/69 (63.77%), Postives = 51/69 (73.91%), Query Frame = 0


Query: 8  LEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRIMAALSDFPSG 67
          LE M     +FLLVQ LVYLILSKSS++FSKN  RS+SFR  RS SIRR +AALSD P+G
Sbjct: 7  LEDMLLKVGMFLLVQALVYLILSKSSNIFSKNVSRSVSFRTARSASIRRFLAALSDLPAG 66

Query: 68 TGDPDESRG 77
          +  P  SRG
Sbjct: 67 SESP--SRG 73

[Close]

BLAST of CmoCh17G008950.1 vs. ExPASy TrEMBL
Match: A0A660KP35 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_010708 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.6e-10
Identity = 42/68 (61.76%), Postives = 52/68 (76.47%), Query Frame = 0


Query: 1  MMMEIRHL-EGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRIMA 60
          M+MEI  L + M    A+FLLVQ+LVYLILS SS +FSKN +RSLSFR  RS+SI R++A
Sbjct: 1  MVMEISSLADNMVLKVAMFLLVQVLVYLILSNSSGIFSKNARRSLSFRPARSVSINRVLA 60

Query: 61 ALSDFPSG 68
           LSD P+G
Sbjct: 61 FLSDMPAG 68

[Close]

BLAST of CmoCh17G008950.1 vs. NCBI nr
Match: XP_022954080.1 (uncharacterized protein LOC111456452 [Cucurbita moschata])

HSP 1 Score: 163.7 bits (413), Expect = 7.1e-37
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRIMAA 60
          MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRIMAA
Sbjct: 1  MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRIMAA 60

Query: 61 LSDFPSGTGDPDESRGECGTMFDEGSS 88
          LSDFPSGTGDPDESRGECGTMFDEGSS
Sbjct: 61 LSDFPSGTGDPDESRGECGTMFDEGSS 87

[Close]

BLAST of CmoCh17G008950.1 vs. NCBI nr
Match: XP_023548863.1 (uncharacterized protein LOC111807384 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 162.5 bits (410), Expect = 1.6e-36
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRIMAA 60
          MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSL+IRRIMAA
Sbjct: 1  MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLTIRRIMAA 60

Query: 61 LSDFPSGTGDPDESRGECGTMFDEGSS 88
          LSDFPSGTGDPDESRGECGTMFDEGSS
Sbjct: 61 LSDFPSGTGDPDESRGECGTMFDEGSS 87

[Close]

BLAST of CmoCh17G008950.1 vs. NCBI nr
Match: KAG6575656.1 (hypothetical protein SDJN03_26295, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014206.1 hypothetical protein SDJN02_24381, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 160.2 bits (404), Expect = 7.9e-36
Identity = 85/87 (97.70%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1  MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRIMAA 60
          MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSL+IRRIMAA
Sbjct: 1  MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLTIRRIMAA 60

Query: 61 LSDFPSGTGDPDESRGECGTMFDEGSS 88
          LSDFPSG GDPDESRGECGTMFDEGSS
Sbjct: 61 LSDFPSGDGDPDESRGECGTMFDEGSS 87

[Close]

BLAST of CmoCh17G008950.1 vs. NCBI nr
Match: XP_022991948.1 (uncharacterized protein LOC111488440 [Cucurbita maxima])

HSP 1 Score: 139.4 bits (350), Expect = 1.4e-29
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 1  MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRIMAA 60
          MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRIMAA
Sbjct: 1  MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRIMAA 60

Query: 61 LSDFPSGTGDPDESRG 77
          LSDFPSG GDPDESRG
Sbjct: 61 LSDFPSGAGDPDESRG 76

[Close]

BLAST of CmoCh17G008950.1 vs. NCBI nr
Match: XP_022147203.1 (uncharacterized protein LOC111016209 [Momordica charantia])

HSP 1 Score: 106.3 bits (264), Expect = 1.4e-19
Identity = 67/95 (70.53%), Postives = 71/95 (74.74%), Query Frame = 0


Query: 1  MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRIMAA 60
          M MEI  LEG+  TAAVF LVQILVYLILSKSS VFSKNTKRSLSFR VRSLSIRRI+AA
Sbjct: 2  MTMEIIPLEGIVATAAVFFLVQILVYLILSKSSDVFSKNTKRSLSFRHVRSLSIRRILAA 61

Query: 61 LSDFPSG--TGDPDES------RGECGTMFDEGSS 88
          LSD PSG     P+ES       GEC  MF +GSS
Sbjct: 62 LSDVPSGGEPSPPNESPSPFSIGGECAAMFRDGSS 96

[Close]

BLAST of CmoCh17G008950.1 vs. TAIR 10
Match: AT1G05575.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anaerobic respiration; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31945.1); Has 63 Blast hits to 63 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 65.1 bits (157), Expect = 3.2e-11
Identity = 37/61 (60.66%), Postives = 44/61 (72.13%), Query Frame = 0


Query: 9  EGMAETAAVFLLVQILVYLILSKSSHVF--SKNTKRSLSFRQVRSLSIRRIMAALSDFPS 68
          EGM    ++F L+Q LVYLILSKSS VF  SK  KR+ SFR  RS+SIRRI+A L D P+
Sbjct: 6  EGMLMKVSIFALIQGLVYLILSKSSSVFSTSKTMKRAYSFRSARSISIRRILAVLQDMPA 65

[Close]

BLAST of CmoCh17G008950.1 vs. TAIR 10
Match: AT2G31945.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05575.1); Has 61 Blast hits to 61 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 61.2 bits (147), Expect = 4.7e-10
Identity = 40/79 (50.63%), Postives = 50/79 (63.29%), Query Frame = 0


Query: 11 MAETAAVFLLVQILVYLILSKSSHVF--SKNTKRSLSFRQVRSLSIRRIMAALSDFPSGT 70
          M    A+F LVQ LVYLIL KSS VF  S + KR+ SFR +RS+SIRRI+AAL D P+G 
Sbjct: 8  MLMKVALFALVQGLVYLILLKSSRVFARSNSLKRAYSFRPMRSVSIRRILAALQDIPAGD 67

Query: 71 GDPDESRGECGTMFDEGSS 88
               S G   +  DE ++
Sbjct: 68 DMSPSSNGSSSSSQDEAAT 86

The following BLAST results are available for this feature:

BLAST of CmoCh17G008950.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh17G008950.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GRF7	3.5e-37	100.00	uncharacterized protein LOC111456452 OS=Cucurbita moschata OX=3662 GN=LOC1114564...	[more]
A0A6J1JXQ0	7.0e-30	98.68	uncharacterized protein LOC111488440 OS=Cucurbita maxima OX=3661 GN=LOC111488440...	[more]
A0A6J1D0M4	6.6e-20	70.53	uncharacterized protein LOC111016209 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]
A0A1U7YVL7	9.5e-11	63.77	uncharacterized protein LOC104587448 OS=Nelumbo nucifera OX=4432 GN=LOC104587448...	[more]
A0A660KP35	3.6e-10	61.76	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_010708 PE=4 SV=1	[more]

BLAST of CmoCh17G008950.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022954080.1	7.1e-37	100.00	uncharacterized protein LOC111456452 [Cucurbita moschata]	[more]
XP_023548863.1	1.6e-36	98.85	uncharacterized protein LOC111807384 [Cucurbita pepo subsp. pepo]	[more]
KAG6575656.1	7.9e-36	97.70	hypothetical protein SDJN03_26295, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022991948.1	1.4e-29	98.68	uncharacterized protein LOC111488440 [Cucurbita maxima]	[more]
XP_022147203.1	1.4e-19	70.53	uncharacterized protein LOC111016209 [Momordica charantia]	[more]

BLAST of CmoCh17G008950.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G05575.1	3.2e-11	60.66	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anaerobi...	[more]
AT2G31945.1	4.7e-10	50.63	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..87
None	No IPR available	PANTHER	PTHR34268:SF16	OS02G0774200 PROTEIN	coord: 10..75
None	No IPR available	PANTHER	PTHR34268	OS01G0321850 PROTEIN	coord: 10..75

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh17G008950	CmoCh17G008950	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh17G008950.1:exon:2969	CmoCh17G008950.1:exon:2969	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh17G008950.1:cds	CmoCh17G008950.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh17G008950.1	CmoCh17G008950.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane