CmoCh15G006820 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh15G006820
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	two-component response regulator ORR9-like isoform X1
Location	Cmo_Chr15: 3337861 .. 3338359 (-)
RNA-Seq Expression	CmoCh15G006820
Synteny	CmoCh15G006820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTGATGAAAGCAGGAGACGTAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCATTTCCACGTGCTGGCAGTGGACGACAGCCTACTAGAAAGAAAGGTTCTGGAAAAGCTCCTAACAATTTCTTCTTCATGCGAAGGTAAGAAATCCAATCCATAGCTAAATTCACATACTTTCTTTTTTAAAACCATTTTATAATACAATCCAATGCCCAGCAGTGACCTGCGTGGAGTCTGGAGATAAGGCTCTAAGGTATCTGGGCCTGCTTGATGACCTTGACAACTTTTCTTCTCCATTTTCTCCCCCACGTCTCTCCCAACAACAGGTCATTTTAATTAATTTTTTTTTCTATTATAGCCTTTAA

mRNA sequence

ATGGAGTTGATGAAAGCAGGAGACGTAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCATTTCCACGTGCTGGCAGTGGACGACAGCCTACTAGAAAGAAAGGTTCTGGAAAAGCTCCTAACAATTTCTTCTTCATGCGAAGTGACCTGCGTGGAGTCTGGAGATAAGGCTCTAAGCCTTTAA

Coding sequence (CDS)

ATGGAGTTGATGAAAGCAGGAGACGTAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCATTTCCACGTGCTGGCAGTGGACGACAGCCTACTAGAAAGAAAGGTTCTGGAAAAGCTCCTAACAATTTCTTCTTCATGCGAAGTGACCTGCGTGGAGTCTGGAGATAAGGCTCTAAGCCTTTAA

Protein sequence

MELMKAGDVEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEVQQQQQQQQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCVESGDKALSL

Homology

[Close]

BLAST of CmoCh15G006820 vs. ExPASy TrEMBL
Match: A0A6J1FIN1 (two-component response regulator ORR9-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111444632 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 4.0e-16
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 45  EEEEEEEEEVQQQQQQQQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCVESGDKAL 103
           EEEEEEEEEVQQQQQQQQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCVESGDKAL
Sbjct: 10  EEEEEEEEEVQQQQQQQQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCVESGDKAL 67

[Close]

BLAST of CmoCh15G006820 vs. ExPASy TrEMBL
Match: A0A6J1FDT6 (two-component response regulator ORR9-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111444632 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 4.0e-16
Identity = 70/102 (68.63%), Postives = 70/102 (68.63%), Query Frame = 0


Query: 1   MELMKAGDVEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEVQQQQQQ 60
           MELMKAGDV                                EEEEEEEEEEEEVQQQQQQ
Sbjct: 1   MELMKAGDV--------------------------------EEEEEEEEEEEEVQQQQQQ 60

Query: 61  QQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCVESGDKAL 103
           QQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCVESGDKAL
Sbjct: 61  QQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCVESGDKAL 70

[Close]

BLAST of CmoCh15G006820 vs. ExPASy TrEMBL
Match: A0A6J1FDU5 (two-component response regulator ORR9-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111444632 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.4e-13
Identity = 64/102 (62.75%), Postives = 64/102 (62.75%), Query Frame = 0


Query: 1   MELMKAGDVEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEVQQQQQQ 60
           MELMKAGDVEEEEEEEEEE                                      QQQ
Sbjct: 1   MELMKAGDVEEEEEEEEEE--------------------------------------QQQ 60

Query: 61  QQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCVESGDKAL 103
           QQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCVESGDKAL
Sbjct: 61  QQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCVESGDKAL 64

[Close]

BLAST of CmoCh15G006820 vs. ExPASy TrEMBL
Match: A0A6J1JYN5 (two-component response regulator ORR9-like OS=Cucurbita maxima OX=3661 GN=LOC111489481 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.3e-11
Identity = 63/102 (61.76%), Postives = 64/102 (62.75%), Query Frame = 0


Query: 1   MELMKAGDVEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEVQQQQQQ 60
           MELMKAGDVEEEEEEEEE EEE                                     +
Sbjct: 1   MELMKAGDVEEEEEEEEEGEEE------------------------------------VK 60

Query: 61  QQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCVESGDKAL 103
           QQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCVESGDKAL
Sbjct: 61  QQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCVESGDKAL 66

[Close]

BLAST of CmoCh15G006820 vs. NCBI nr
Match: XP_022938352.1 (two-component response regulator ORR9-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 94.0 bits (232), Expect = 8.3e-16
Identity = 70/102 (68.63%), Postives = 70/102 (68.63%), Query Frame = 0


Query: 1   MELMKAGDVEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEVQQQQQQ 60
           MELMKAGDV                                EEEEEEEEEEEEVQQQQQQ
Sbjct: 1   MELMKAGDV--------------------------------EEEEEEEEEEEEVQQQQQQ 60

Query: 61  QQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCVESGDKAL 103
           QQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCVESGDKAL
Sbjct: 61  QQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCVESGDKAL 70

[Close]

BLAST of CmoCh15G006820 vs. NCBI nr
Match: XP_022938353.1 (two-component response regulator ORR9-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 94.0 bits (232), Expect = 8.3e-16
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 45  EEEEEEEEEVQQQQQQQQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCVESGDKAL 103
           EEEEEEEEEVQQQQQQQQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCVESGDKAL
Sbjct: 10  EEEEEEEEEVQQQQQQQQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCVESGDKAL 67

[Close]

BLAST of CmoCh15G006820 vs. NCBI nr
Match: XP_023550891.1 (two-component response regulator ARR8-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 90.1 bits (222), Expect = 1.2e-14
Identity = 68/102 (66.67%), Postives = 69/102 (67.65%), Query Frame = 0


Query: 1   MELMKAGDVEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEVQQQQQQ 60
           MELMKAGDV                                EEEEEEEEEEE VQQQQQQ
Sbjct: 1   MELMKAGDV--------------------------------EEEEEEEEEEEVVQQQQQQ 60

Query: 61  QQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCVESGDKAL 103
           QQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCV+SGDKAL
Sbjct: 61  QQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCVDSGDKAL 70

[Close]

BLAST of CmoCh15G006820 vs. NCBI nr
Match: XP_023550892.1 (two-component response regulator ARR9-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 90.1 bits (222), Expect = 1.2e-14
Identity = 68/102 (66.67%), Postives = 69/102 (67.65%), Query Frame = 0


Query: 1   MELMKAGDVEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEVQQQQQQ 60
           MELMKAGDV                                EEEEEEEEEEE VQQQQQQ
Sbjct: 1   MELMKAGDV--------------------------------EEEEEEEEEEEVVQQQQQQ 60

Query: 61  QQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCVESGDKAL 103
           QQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCV+SGDKAL
Sbjct: 61  QQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCVDSGDKAL 70

[Close]

BLAST of CmoCh15G006820 vs. NCBI nr
Match: XP_023550893.1 (two-component response regulator ARR9-like isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 90.1 bits (222), Expect = 1.2e-14
Identity = 68/102 (66.67%), Postives = 69/102 (67.65%), Query Frame = 0


Query: 1   MELMKAGDVEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEVQQQQQQ 60
           MELMKAGDV                                EEEEEEEEEEE VQQQQQQ
Sbjct: 1   MELMKAGDV--------------------------------EEEEEEEEEEEVVQQQQQQ 60

Query: 61  QQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCVESGDKAL 103
           QQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCV+SGDKAL
Sbjct: 61  QQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCVDSGDKAL 70

The following BLAST results are available for this feature:

BLAST of CmoCh15G006820 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh15G006820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FIN1	4.0e-16	100.00	two-component response regulator ORR9-like isoform X2 OS=Cucurbita moschata OX=3...	[more]
A0A6J1FDT6	4.0e-16	68.63	two-component response regulator ORR9-like isoform X1 OS=Cucurbita moschata OX=3...	[more]
A0A6J1FDU5	1.4e-13	62.75	two-component response regulator ORR9-like isoform X3 OS=Cucurbita moschata OX=3...	[more]
A0A6J1JYN5	1.3e-11	61.76	two-component response regulator ORR9-like OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]

BLAST of CmoCh15G006820 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022938352.1	8.3e-16	68.63	two-component response regulator ORR9-like isoform X1 [Cucurbita moschata]	[more]
XP_022938353.1	8.3e-16	100.00	two-component response regulator ORR9-like isoform X2 [Cucurbita moschata]	[more]
XP_023550891.1	1.2e-14	66.67	two-component response regulator ARR8-like isoform X1 [Cucurbita pepo subsp. pep...	[more]
XP_023550892.1	1.2e-14	66.67	two-component response regulator ARR9-like isoform X2 [Cucurbita pepo subsp. pep...	[more]
XP_023550893.1	1.2e-14	66.67	two-component response regulator ARR9-like isoform X3 [Cucurbita pepo subsp. pep...	[more]

BLAST of CmoCh15G006820 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 3..64
None	No IPR available	GENE3D	3.40.50.2300		coord: 55..104 e-value: 3.9E-7 score: 32.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..64
None	No IPR available	PANTHER	PTHR43874:SF96	TWO-COMPONENT RESPONSE REGULATOR ORR4	coord: 47..103
None	No IPR available	PANTHER	PTHR43874	TWO-COMPONENT RESPONSE REGULATOR	coord: 47..103
IPR001789	Signal transduction response regulator, receiver domain	PROSITE	PS50110	RESPONSE_REGULATORY	coord: 66..104 score: 11.678153
IPR011006	CheY-like superfamily	SUPERFAMILY	52172	CheY-like	coord: 65..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh15G006820.1	CmoCh15G006820.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000160	phosphorelay signal transduction system
biological_process	GO:0016310	phosphorylation
molecular_function	GO:0016301	kinase activity