CmoCh12G007580 (gene) Cucurbita moschata (Rifu) v1 | CuGenDBv2

Overview


Name	CmoCh12G007580
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Photosystem II D2 protein, putative
Location	Cmo_Chr12: 6070470 .. 6071477 (-)
RNA-Seq Expression	CmoCh12G007580
Synteny	CmoCh12G007580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGATTGGTTACGGAGGGACCGGTTCGGTCTTGTAGGTTGGTCCGGGCTATTCCTCTTTCCTTGTGCCTATTGTGTCGTAGGAGGTTGGTTTACAGTACAGGTACAACCTTTGTAACTTACTTAATGGTATACCCAGGGATTGCCAAGTTCCTATTTGGAAGGATGCAACTTCTTAACCGCCACTGTTAACACTCCTGCTAATAGTTTAGCACACTCTTTCGTCTTACTATGGGGTCCTGAAGCACAAGGAGATAGATTTGACTCCTTGGTGTCCATTAGGTGGTCTATGGACTTTGCTTTCTTCGGACTAATAGGTCTTGAATCTTACACGGCAATTTCAATTTGGACTTGCTTGATCTCTTCAATTGAGACCTTATAATGATCATGCAATCGCCGGGACCAATTGCTGTTTTTCTTTCTGTATTCCTGATTTATCTCCACTAGGGCAGTCTAGTCTTCTGGTTGGTTCTTTGCCCCTAGTTTTTGTGTAGCTGCTATATTTCTATTCATCTTTTACAAGGATTTCATAATTGGACATTGAACCCCTTTCATATGATGTTGCAGGTGTATTGGGCGTGGCTATGTGTCATGGTGCTACTGTATAAAATCCCTTATTTGAAGATGGTGATGGATGGTGAAAATAGATTCCTTCCGGGTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTACCAAATCTTTGAGGTTTTCTAATAAAAAAAGGGGTTATTACATTTCTTTCTCTTATTTGTAACAGTAACTGCTTTATGGATGAGTGCTTGCTCTTGGAGTAGTAGTTGGTCTGGCCCTGAACCTACGTGCCTATGACTTTGTTTCTCAGGAAATCCGTGGGAAGATCCTGAATTTGAGACTTTCTATCTATATACACCCAAAATCTTCTCTTAACCGAAGGGATTCGTACTTTGATGGCGGCTCAAGCAAGATTAGCCTCATGAAAACACACCTTACTTATATTACCTGA

ATGGATGATTGGTTACGGAGGGACCGGTTCGGTCTTGTAGGTTGGTCCGGGCTATTCCTCTTTCCTTGTGCCTATTGTGTCGTAGGAGGTTGGTTTACAGTACAGGTGTATTGGGCGTGGCTATGTGTCATGGTGCTACTGTATAAAATCCCTTATTTGAAGATGGTGATGGATGGTGAAAATAGATTCCTTCCGGGTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTACCAAATCTTTGAGGAAATCCGTGGGAAGATCCTGAATTTGAGACTTTCTATCTATATACACCCAAAATCTTCTCTTAACCGAAGGGATTCGTACTTTGATGGCGGCTCAAGCAAGATTAGCCTCATGAAAACACACCTTACTTATATTACCTGA

Coding sequence (CDS)

ATGGATGATTGGTTACGGAGGGACCGGTTCGGTCTTGTAGGTTGGTCCGGGCTATTCCTCTTTCCTTGTGCCTATTGTGTCGTAGGAGGTTGGTTTACAGTACAGGTGTATTGGGCGTGGCTATGTGTCATGGTGCTACTGTATAAAATCCCTTATTTGAAGATGGTGATGGATGGTGAAAATAGATTCCTTCCGGGTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTACCAAATCTTTGAGGAAATCCGTGGGAAGATCCTGAATTTGAGACTTTCTATCTATATACACCCAAAATCTTCTCTTAACCGAAGGGATTCGTACTTTGATGGCGGCTCAAGCAAGATTAGCCTCATGAAAACACACCTTACTTATATTACCTGA

Protein sequence

MDDWLRRDRFGLVGWSGLFLFPCAYCVVGGWFTVQVYWAWLCVMVLLYKIPYLKMVMDGENRFLPGNPTQAEETYSMVTANRFWYQIFEEIRGKILNLRLSIYIHPKSSLNRRDSYFDGGSSKISLMKTHLTYIT

Homology

BLAST of CmoCh12G007580 vs. ExPASy Swiss-Prot
Match: P69685 (Photosystem II D2 protein OS=Antirrhinum majus OX=4151 GN=psbD PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-10
Identity = 28/33 (84.85%), Postives = 28/33 (84.85%), Query Frame = 0


Query: 1  MDDWLRRDRFGLVGWSGLFLFPCAYCVVGGWFT 34
          MDDWLRRDRF  VGWSGL LFPCAY  VGGWFT
Sbjct: 19 MDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFT 51

HSP 2 Score: 55.5 bits (132), Expect = 5.6e-07
Identity = 25/31 (80.65%), Postives = 25/31 (80.65%), Query Frame = 0


Query: 58  DGENRFLPGNPTQAEETYSMVTANRFWYQIF 89
           DG N F   NPTQAEETYSMVTANRFW QIF
Sbjct: 228 DGANTFRAFNPTQAEETYSMVTANRFWSQIF 258

BLAST of CmoCh12G007580 vs. ExPASy Swiss-Prot
Match: Q8S8X8 (Photosystem II D2 protein OS=Atropa belladonna OX=33113 GN=psbD PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-10
Identity = 28/33 (84.85%), Postives = 28/33 (84.85%), Query Frame = 0


Query: 1  MDDWLRRDRFGLVGWSGLFLFPCAYCVVGGWFT 34
          MDDWLRRDRF  VGWSGL LFPCAY  VGGWFT
Sbjct: 19 MDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFT 51

HSP 2 Score: 55.5 bits (132), Expect = 5.6e-07
Identity = 25/31 (80.65%), Postives = 25/31 (80.65%), Query Frame = 0


Query: 58  DGENRFLPGNPTQAEETYSMVTANRFWYQIF 89
           DG N F   NPTQAEETYSMVTANRFW QIF
Sbjct: 228 DGANTFRAFNPTQAEETYSMVTANRFWSQIF 258

BLAST of CmoCh12G007580 vs. ExPASy Swiss-Prot
Match: B5LMM1 (Photosystem II D2 protein OS=Cicer arietinum OX=3827 GN=psbD PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-10
Identity = 28/33 (84.85%), Postives = 28/33 (84.85%), Query Frame = 0


Query: 1  MDDWLRRDRFGLVGWSGLFLFPCAYCVVGGWFT 34
          MDDWLRRDRF  VGWSGL LFPCAY  VGGWFT
Sbjct: 19 MDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFT 51

HSP 2 Score: 55.5 bits (132), Expect = 5.6e-07
Identity = 25/31 (80.65%), Postives = 25/31 (80.65%), Query Frame = 0


Query: 58  DGENRFLPGNPTQAEETYSMVTANRFWYQIF 89
           DG N F   NPTQAEETYSMVTANRFW QIF
Sbjct: 228 DGANTFRAFNPTQAEETYSMVTANRFWSQIF 258

BLAST of CmoCh12G007580 vs. ExPASy Swiss-Prot
Match: Q4VZN8 (Photosystem II D2 protein OS=Cucumis sativus OX=3659 GN=psbD PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-10
Identity = 28/33 (84.85%), Postives = 28/33 (84.85%), Query Frame = 0


Query: 1  MDDWLRRDRFGLVGWSGLFLFPCAYCVVGGWFT 34
          MDDWLRRDRF  VGWSGL LFPCAY  VGGWFT
Sbjct: 19 MDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFT 51

HSP 2 Score: 55.5 bits (132), Expect = 5.6e-07
Identity = 25/31 (80.65%), Postives = 25/31 (80.65%), Query Frame = 0


Query: 58  DGENRFLPGNPTQAEETYSMVTANRFWYQIF 89
           DG N F   NPTQAEETYSMVTANRFW QIF
Sbjct: 228 DGANTFRAFNPTQAEETYSMVTANRFWSQIF 258

BLAST of CmoCh12G007580 vs. ExPASy Swiss-Prot
Match: Q0G9W7 (Photosystem II D2 protein OS=Daucus carota OX=4039 GN=psbD PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-10
Identity = 28/33 (84.85%), Postives = 28/33 (84.85%), Query Frame = 0


Query: 1  MDDWLRRDRFGLVGWSGLFLFPCAYCVVGGWFT 34
          MDDWLRRDRF  VGWSGL LFPCAY  VGGWFT
Sbjct: 19 MDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFT 51

HSP 2 Score: 55.5 bits (132), Expect = 5.6e-07
Identity = 25/31 (80.65%), Postives = 25/31 (80.65%), Query Frame = 0


Query: 58  DGENRFLPGNPTQAEETYSMVTANRFWYQIF 89
           DG N F   NPTQAEETYSMVTANRFW QIF
Sbjct: 228 DGANTFRAFNPTQAEETYSMVTANRFWSQIF 258

BLAST of CmoCh12G007580 vs. ExPASy TrEMBL
Match: A0A078EKT7 (BnaC05g32120D protein OS=Brassica napus OX=3708 GN=BnaC05g32120D PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.8e-16
Identity = 58/128 (45.31%), Postives = 65/128 (50.78%), Query Frame = 0


Query: 1   MDDWLRRDRFGLVGWSGLFLFPCAYCVVGGWFTVQVYW--------AWLCVMVLLYK--- 60
           MDDWLRRDRF  VGWSGL LFPCAY  +GGWFT Q  W        A +   +L ++   
Sbjct: 19  MDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGQSGWFFAPSFGVAAIFRFILFFQGFH 78

Query: 61  ----IPYLKMVM-------------------------DGENRFLPGNPTQAEETYSMVTA 89
                P+  M +                         DG N F   NPTQAEETYSMVTA
Sbjct: 79  NWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTA 138

BLAST of CmoCh12G007580 vs. ExPASy TrEMBL
Match: A0A3P6H6D7 (Uncharacterized protein OS=Brassica oleracea OX=3712 GN=BOLSC45T60872H PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.8e-16
Identity = 58/128 (45.31%), Postives = 65/128 (50.78%), Query Frame = 0


Query: 1   MDDWLRRDRFGLVGWSGLFLFPCAYCVVGGWFTVQVYW--------AWLCVMVLLYK--- 60
           MDDWLRRDRF  VGWSGL LFPCAY  +GGWFT Q  W        A +   +L ++   
Sbjct: 25  MDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGQSGWFFAPSFGVAAIFRFILFFQGFH 84

Query: 61  ----IPYLKMVM-------------------------DGENRFLPGNPTQAEETYSMVTA 89
                P+  M +                         DG N F   NPTQAEETYSMVTA
Sbjct: 85  NWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTA 144

BLAST of CmoCh12G007580 vs. ExPASy TrEMBL
Match: A0A3P6H9V0 (Uncharacterized protein OS=Brassica oleracea OX=3712 GN=BOLSC29T60453H PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.8e-16
Identity = 58/128 (45.31%), Postives = 65/128 (50.78%), Query Frame = 0


Query: 1   MDDWLRRDRFGLVGWSGLFLFPCAYCVVGGWFTVQVYW--------AWLCVMVLLYK--- 60
           MDDWLRRDRF  VGWSGL LFPCAY  +GGWFT Q  W        A +   +L ++   
Sbjct: 25  MDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGQSGWFFAPSFGVAAIFRFILFFQGFH 84

Query: 61  ----IPYLKMVM-------------------------DGENRFLPGNPTQAEETYSMVTA 89
                P+  M +                         DG N F   NPTQAEETYSMVTA
Sbjct: 85  NWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTA 144

BLAST of CmoCh12G007580 vs. ExPASy TrEMBL
Match: A0A078HPI2 (BnaC03g60960D protein OS=Brassica napus OX=3708 GN=BnaC03g60960D PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.8e-16
Identity = 58/128 (45.31%), Postives = 65/128 (50.78%), Query Frame = 0


Query: 1   MDDWLRRDRFGLVGWSGLFLFPCAYCVVGGWFTVQVYW--------AWLCVMVLLYK--- 60
           MDDWLRRDRF  VGWSGL LFPCAY  +GGWFT Q  W        A +   +L ++   
Sbjct: 25  MDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGQSGWFFAPSFGVAAIFRFILFFQGFH 84

Query: 61  ----IPYLKMVM-------------------------DGENRFLPGNPTQAEETYSMVTA 89
                P+  M +                         DG N F   NPTQAEETYSMVTA
Sbjct: 85  NWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTA 144

BLAST of CmoCh12G007580 vs. ExPASy TrEMBL
Match: A0A3S3PBZ6 (Putative Photosystem II D2 protein OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_02738200 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.8e-16
Identity = 58/128 (45.31%), Postives = 65/128 (50.78%), Query Frame = 0


Query: 1   MDDWLRRDRFGLVGWSGLFLFPCAYCVVGGWFTVQVYW--------AWLCVMVLLYK--- 60
           MDDWLRRDRF  VGWSGL LFPCAY  +GGWFT Q  W        A +   +L ++   
Sbjct: 19  MDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGQSGWFFAPSFGVAAIFRFILFFQGFH 78

Query: 61  ----IPYLKMVM-------------------------DGENRFLPGNPTQAEETYSMVTA 89
                P+  M +                         DG N F   NPTQAEETYSMVTA
Sbjct: 79  NWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTA 138

BLAST of CmoCh12G007580 vs. TAIR 10
Match: ATCG00270.1 (photosystem II reaction center protein D )

HSP 1 Score: 66.6 bits (161), Expect = 1.7e-11
Identity = 27/33 (81.82%), Postives = 28/33 (84.85%), Query Frame = 0


Query: 1  MDDWLRRDRFGLVGWSGLFLFPCAYCVVGGWFT 34
          MDDWLRRDRF  VGWSGL LFPCAY  +GGWFT
Sbjct: 19 MDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFT 51

HSP 2 Score: 55.5 bits (132), Expect = 4.0e-08
Identity = 25/31 (80.65%), Postives = 25/31 (80.65%), Query Frame = 0


Query: 58  DGENRFLPGNPTQAEETYSMVTANRFWYQIF 89
           DG N F   NPTQAEETYSMVTANRFW QIF
Sbjct: 228 DGANTFRAFNPTQAEETYSMVTANRFWSQIF 258

The following BLAST results are available for this feature:

BLAST of CmoCh12G007580 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P69685	1.1e-10	84.85	Photosystem II D2 protein OS=Antirrhinum majus OX=4151 GN=psbD PE=1 SV=1	[more]
Q8S8X8	1.1e-10	84.85	Photosystem II D2 protein OS=Atropa belladonna OX=33113 GN=psbD PE=3 SV=1	[more]
B5LMM1	1.1e-10	84.85	Photosystem II D2 protein OS=Cicer arietinum OX=3827 GN=psbD PE=3 SV=1	[more]
Q4VZN8	1.1e-10	84.85	Photosystem II D2 protein OS=Cucumis sativus OX=3659 GN=psbD PE=3 SV=1	[more]
Q0G9W7	1.1e-10	84.85	Photosystem II D2 protein OS=Daucus carota OX=4039 GN=psbD PE=3 SV=1	[more]

BLAST of CmoCh12G007580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A078EKT7	1.8e-16	45.31	BnaC05g32120D protein OS=Brassica napus OX=3708 GN=BnaC05g32120D PE=3 SV=1	[more]
A0A3P6H6D7	1.8e-16	45.31	Uncharacterized protein OS=Brassica oleracea OX=3712 GN=BOLSC45T60872H PE=3 SV=1	[more]
A0A3P6H9V0	1.8e-16	45.31	Uncharacterized protein OS=Brassica oleracea OX=3712 GN=BOLSC29T60453H PE=3 SV=1	[more]
A0A078HPI2	1.8e-16	45.31	BnaC03g60960D protein OS=Brassica napus OX=3708 GN=BnaC03g60960D PE=3 SV=1	[more]
A0A3S3PBZ6	1.8e-16	45.31	Putative Photosystem II D2 protein OS=Cinnamomum micranthum f. kanehirae OX=3374...	[more]

BLAST of CmoCh12G007580 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00270.1	1.7e-11	81.82	photosystem II reaction center protein D	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33149:SF7	PHOTOSYSTEM II D2 PROTEIN	coord: 58..88
IPR000484	Photosynthetic reaction centre, L/M	PANTHER	PTHR33149	PHOTOSYSTEM II PROTEIN D1	coord: 58..88
IPR036854	Photosystem II protein D1/D2 superfamily	SUPERFAMILY	81483	Bacterial photosystem II reaction centre, L and M subunits	coord: 2..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G007580.1	CmoCh12G007580.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
biological_process	GO:0019684	photosynthesis, light reaction
cellular_component	GO:0005622	intracellular anatomical structure
cellular_component	GO:0016020	membrane
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity