CmoCh12G002480 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTGTTTGGTGTTTGTGTGCGATGAGGACCAGAGGATCCTGTCGAGGCAGCCAGCTCCGGGGGCATGTCCCTACTGCGGAGGCACGATCCAGGCCACCGACGTAGAAACCAAATGGAGGTTCTGTTTCCTCCCTCTCTACTGGAAAAGTAAACGCAAGTTCAATTGCAACAGCTGCAACAGAGAGCTTGTTATGCAGTAGAAACACTGTTATCTTACAGATTTGTTCTTTTCCATGATCTTTGAAGTTAAGATGGGGGTGACCCATCTTATCTTCGTTTTGAGATTATGATCAGTGTTTGTGTAATAATCTCCTACTATCTTAAAAATAGATATACTGATATACATACCTTGAGATTGCTAGAGAATTTTGACCTTTCTCCACGTCTCTTTTATGATTACGAACTACTGTGTATGCTGCATGATCTCTATAGAAATAGATTGCAGTTCTGGATTCAAAACGTAG ATGTGTTTGGTGTTTGTGTGCGATGAGGACCAGAGGATCCTGTCGAGGCAGCCAGCTCCGGGGGCATGTCCCTACTGCGGAGGCACGATCCAGGCCACCGACGTAGAAACCAAATGGAGGTTCTGTTTCCTCCCTCTCTACTGGAAAAGTAAACGCAAGTTCAATTGCAACAGCTGCAACAGAGAGCTTGTTATGCATTCTGGATTCAAAACGTAG ATGTGTTTGGTGTTTGTGTGCGATGAGGACCAGAGGATCCTGTCGAGGCAGCCAGCTCCGGGGGCATGTCCCTACTGCGGAGGCACGATCCAGGCCACCGACGTAGAAACCAAATGGAGGTTCTGTTTCCTCCCTCTCTACTGGAAAAGTAAACGCAAGTTCAATTGCAACAGCTGCAACAGAGAGCTTGTTATGCATTCTGGATTCAAAACGTAG MCLVFVCDEDQRILSRQPAPGACPYCGGTIQATDVETKWRFCFLPLYWKSKRKFNCNSCNRELVMHSGFKT Homology
BLAST of CmoCh12G002480 vs. ExPASy TrEMBL
Match: A0A6J1GHX0 (uncharacterized protein LOC111454313 OS=Cucurbita moschata OX=3662 GN=LOC111454313 PE=4 SV=1) HSP 1 Score: 151.8 bits (382), Expect = 1.1e-33 Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0
BLAST of CmoCh12G002480 vs. ExPASy TrEMBL
Match: A0A6J1KLN0 (uncharacterized protein LOC111496375 OS=Cucurbita maxima OX=3661 GN=LOC111496375 PE=4 SV=1) HSP 1 Score: 141.7 bits (356), Expect = 1.1e-30 Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0
BLAST of CmoCh12G002480 vs. ExPASy TrEMBL
Match: A0A1S3BCK8 (uncharacterized protein LOC103488227 OS=Cucumis melo OX=3656 GN=LOC103488227 PE=4 SV=1) HSP 1 Score: 131.3 bits (329), Expect = 1.6e-27 Identity = 53/65 (81.54%), Postives = 60/65 (92.31%), Query Frame = 0
BLAST of CmoCh12G002480 vs. ExPASy TrEMBL
Match: A0A6J1KC13 (uncharacterized protein LOC111491925 OS=Cucurbita maxima OX=3661 GN=LOC111491925 PE=4 SV=1) HSP 1 Score: 131.0 bits (328), Expect = 2.0e-27 Identity = 53/65 (81.54%), Postives = 60/65 (92.31%), Query Frame = 0
BLAST of CmoCh12G002480 vs. ExPASy TrEMBL
Match: A0A6J1HDM3 (uncharacterized protein LOC111462635 OS=Cucurbita moschata OX=3662 GN=LOC111462635 PE=4 SV=1) HSP 1 Score: 131.0 bits (328), Expect = 2.0e-27 Identity = 53/65 (81.54%), Postives = 60/65 (92.31%), Query Frame = 0
BLAST of CmoCh12G002480 vs. TAIR 10
Match: AT5G10695.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G57123.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 105.5 bits (262), Expect = 1.8e-23 Identity = 39/66 (59.09%), Postives = 53/66 (80.30%), Query Frame = 0
BLAST of CmoCh12G002480 vs. TAIR 10
Match: AT5G57123.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29905.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 102.4 bits (254), Expect = 1.5e-22 Identity = 40/66 (60.61%), Postives = 53/66 (80.30%), Query Frame = 0
BLAST of CmoCh12G002480 vs. TAIR 10
Match: AT4G29905.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G57123.1); Has 73 Blast hits to 73 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 96.3 bits (238), Expect = 1.1e-20 Identity = 39/66 (59.09%), Postives = 49/66 (74.24%), Query Frame = 0
BLAST of CmoCh12G002480 vs. TAIR 10
Match: AT1G52855.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15534.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 63.2 bits (152), Expect = 1.0e-10 Identity = 23/63 (36.51%), Postives = 36/63 (57.14%), Query Frame = 0
BLAST of CmoCh12G002480 vs. TAIR 10
Match: AT5G10695.2 (unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages. ) HSP 1 Score: 52.0 bits (123), Expect = 2.3e-07 Identity = 24/66 (36.36%), Postives = 35/66 (53.03%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
|