CmoCh12G001660 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh12G001660
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionBnaC07g27580D protein
LocationCmo_Chr12: 1100081 .. 1100633 (+)
RNA-Seq ExpressionCmoCh12G001660
SyntenyCmoCh12G001660
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGAGATAAGAGCTTCAACGCCGCCGCCGCCGCCGCCGCCGCAAGACGAGGGAGCAGGGAGGTTTTCTGGCTCGAAGGAAGAAGCGTCGGTGATGGATCGCGTTAAGAAGGGGTGCAGGGCCGTTTATGCGTCTTCTCAAGAGGCACTGCGTTATGTGAAAGCTTTTTTCGTTGGCTGGGTTGGTTCTGTTACTATTTTGAATTGTGATTATTTGAGCTCTCGGAACTGTGTTAACGGAAAATGAAGTTTGGCAGGGGAAGAAGATGACGGCGAAGAGCGAGAAGGAAGCGGCGGAAGCAGATTTGAAGATGGCTAAAATGCAGGTTGAAGCTACTGAGGCCGCGGAGAACGCCAAGAAGGGAACTTAATTTGCGTGCATAATATTTTAGAATGGATCATCAGAAGTTTAGCCCTCCCCCTTGTAACCATTTCTTCTTACCATTTTTCAAATTTTGTATAATTAGTTCTATGATTTATGTATATTTCCCATTTCATCTGTTTGAATTCAATATTCGTAAGTTGCGATTTCAAATGAATCTATTCATTCA

mRNA sequence

ATGGACGAGATAAGAGCTTCAACGCCGCCGCCGCCGCCGCCGCCGCAAGACGAGGGAGCAGGGAGGTTTTCTGGCTCGAAGGAAGAAGCGTCGGTGATGGATCGCGTTAAGAAGGGGTGCAGGGCCGTTTATGCGTCTTCTCAAGAGGCACTGCGTTATGTGAAAGCTTTTTTCGTTGGCTGGGGGAAGAAGATGACGGCGAAGAGCGAGAAGGAAGCGGCGGAAGCAGATTTGAAGATGGCTAAAATGCAGGTTGAAGCTACTGAGGCCGCGGAGAACGCCAAGAAGGGAACTTAATTTGCGTGCATAATATTTTAGAATGGATCATCAGAAGTTTAGCCCTCCCCCTTGTAACCATTTCTTCTTACCATTTTTCAAATTTTGTATAATTAGTTCTATGATTTATGTATATTTCCCATTTCATCTGTTTGAATTCAATATTCGTAAGTTGCGATTTCAAATGAATCTATTCATTCA

Coding sequence (CDS)

ATGGACGAGATAAGAGCTTCAACGCCGCCGCCGCCGCCGCCGCCGCAAGACGAGGGAGCAGGGAGGTTTTCTGGCTCGAAGGAAGAAGCGTCGGTGATGGATCGCGTTAAGAAGGGGTGCAGGGCCGTTTATGCGTCTTCTCAAGAGGCACTGCGTTATGTGAAAGCTTTTTTCGTTGGCTGGGGGAAGAAGATGACGGCGAAGAGCGAGAAGGAAGCGGCGGAAGCAGATTTGAAGATGGCTAAAATGCAGGTTGAAGCTACTGAGGCCGCGGAGAACGCCAAGAAGGGAACTTAA

Protein sequence

MDEIRASTPPPPPPPQDEGAGRFSGSKEEASVMDRVKKGCRAVYASSQEALRYVKAFFVGWGKKMTAKSEKEAAEADLKMAKMQVEATEAAENAKKGT
Homology
BLAST of CmoCh12G001660 vs. ExPASy TrEMBL
Match: A0A6J1GHI8 (uncharacterized protein LOC111454014 OS=Cucurbita moschata OX=3662 GN=LOC111454014 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 5.6e-44
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0

Query: 1  MDEIRASTPPPPPPPQDEGAGRFSGSKEEASVMDRVKKGCRAVYASSQEALRYVKAFFVG 60
          MDEIRASTPPPPPPPQDEGAGRFSGSKEEASVMDRVKKGCRAVYASSQEALRYVKAFFVG
Sbjct: 1  MDEIRASTPPPPPPPQDEGAGRFSGSKEEASVMDRVKKGCRAVYASSQEALRYVKAFFVG 60

Query: 61 WGKKMTAKSEKEAAEADLKMAKMQVEATEAAENAKKGT 99
          WGKKMTAKSEKEAAEADLKMAKMQVEATEAAENAKKGT
Sbjct: 61 WGKKMTAKSEKEAAEADLKMAKMQVEATEAAENAKKGT 98

BLAST of CmoCh12G001660 vs. ExPASy TrEMBL
Match: A0A6J1KRV8 (uncharacterized protein LOC111495934 OS=Cucurbita maxima OX=3661 GN=LOC111495934 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.5e-36
Identity = 89/98 (90.82%), Postives = 90/98 (91.84%), Query Frame = 0

Query: 1  MDEIRASTPPPPPPPQDEGAGRFSGSKEEASVMDRVKKGCRAVYASSQEALRYVKAFFVG 60
          MDEIRAST    PP QD+GAGRFSG KEEASVMDRVKKGC AVYASSQEALRYVKAFFVG
Sbjct: 1  MDEIRAST----PPLQDDGAGRFSGWKEEASVMDRVKKGCMAVYASSQEALRYVKAFFVG 60

Query: 61 WGKKMTAKSEKEAAEADLKMAKMQVEATEAAENAKKGT 99
          WGKKMTAKSEKEAAEADLKMAKMQVEATEAAEN KKGT
Sbjct: 61 WGKKMTAKSEKEAAEADLKMAKMQVEATEAAENTKKGT 94

BLAST of CmoCh12G001660 vs. ExPASy TrEMBL
Match: A0A5A7VBV2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G004430 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 2.3e-29
Identity = 76/98 (77.55%), Postives = 82/98 (83.67%), Query Frame = 0

Query: 1  MDEIRASTPPPPPPPQDEGAGRFSGSKEEASVMDRVKKGCRAVYASSQEALRYVKAFFVG 60
          MDE RA+T     PPQD+GA  FSG K+EASVMDRVKKGC + YASSQE L YVKAFFVG
Sbjct: 1  MDETRAAT---STPPQDDGARAFSGRKQEASVMDRVKKGCTSFYASSQETLGYVKAFFVG 60

Query: 61 WGKKMTAKSEKEAAEADLKMAKMQVEATEAAENAKKGT 99
          WGKK+TAKSEKEAAEADLK AKMQV+ATEAAEN K GT
Sbjct: 61 WGKKITAKSEKEAAEADLKTAKMQVQATEAAENLKNGT 95

BLAST of CmoCh12G001660 vs. ExPASy TrEMBL
Match: A0A1S3BC67 (uncharacterized protein LOC103488109 OS=Cucumis melo OX=3656 GN=LOC103488109 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 5.1e-29
Identity = 75/98 (76.53%), Postives = 82/98 (83.67%), Query Frame = 0

Query: 1  MDEIRASTPPPPPPPQDEGAGRFSGSKEEASVMDRVKKGCRAVYASSQEALRYVKAFFVG 60
          MDE RA+T     PPQD+GA  FSG K+EASVMDRVKKGC + YASSQE L YVKAFFVG
Sbjct: 1  MDETRAAT---STPPQDDGARAFSGRKQEASVMDRVKKGCTSFYASSQETLGYVKAFFVG 60

Query: 61 WGKKMTAKSEKEAAEADLKMAKMQVEATEAAENAKKGT 99
          WGKK+TAKSEKEAAEADL+ AKMQV+ATEAAEN K GT
Sbjct: 61 WGKKITAKSEKEAAEADLRTAKMQVQATEAAENLKNGT 95

BLAST of CmoCh12G001660 vs. ExPASy TrEMBL
Match: A0A6J1BRY6 (uncharacterized protein LOC111005010 OS=Momordica charantia OX=3673 GN=LOC111005010 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 3.1e-18
Identity = 51/63 (80.95%), Postives = 57/63 (90.48%), Query Frame = 0

Query: 33 MDRVKKGCRAVYASSQEALRYVKAFFVGWGKKMTAKSEKEAAEADLKMAKMQVEATEAAE 92
          MDR+K GC + YASSQE LRYVKAFFVGWGKKMTAK+E+EAA+ADLK AKMQV+ATEAAE
Sbjct: 1  MDRIKSGCMSFYASSQETLRYVKAFFVGWGKKMTAKTEEEAAKADLKTAKMQVQATEAAE 60

Query: 93 NAK 96
          N K
Sbjct: 61 NTK 63

BLAST of CmoCh12G001660 vs. TAIR 10
Match: AT2G38465.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; Has 16 Blast hits to 16 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 70.9 bits (172), Expect = 6.6e-13
Identity = 39/66 (59.09%), Postives = 48/66 (72.73%), Query Frame = 0

Query: 31 SVMDRVKKGCRAVYASSQEALRYVKAFFVGWGKKMTAKSEKEAAEADLKMAKMQVEATEA 90
          S+ DRVK  C ++  + QE   YVKAFFVG  K++TAK+EKEA EA L   KMQV+AT+ 
Sbjct: 13 SLSDRVKTNCLSMAVTCQEGFSYVKAFFVGQTKRLTAKNEKEATEAHLTETKMQVDATDE 72

Query: 91 AENAKK 97
          AENAKK
Sbjct: 73 AENAKK 78

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1GHI85.6e-44100.00uncharacterized protein LOC111454014 OS=Cucurbita moschata OX=3662 GN=LOC1114540... [more]
A0A6J1KRV82.5e-3690.82uncharacterized protein LOC111495934 OS=Cucurbita maxima OX=3661 GN=LOC111495934... [more]
A0A5A7VBV22.3e-2977.55Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A1S3BC675.1e-2976.53uncharacterized protein LOC103488109 OS=Cucumis melo OX=3656 GN=LOC103488109 PE=... [more]
A0A6J1BRY63.1e-1880.95uncharacterized protein LOC111005010 OS=Momordica charantia OX=3673 GN=LOC111005... [more]
Match NameE-valueIdentityDescription
AT2G38465.16.6e-1359.09unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 64..91
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..32
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..18

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G001660.1CmoCh12G001660.1mRNA