CmoCh11G004340 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh11G004340
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr11: 2125870 .. 2127475 (+)
RNA-Seq ExpressionCmoCh11G004340
SyntenyCmoCh11G004340
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATCAGGCTTCAAATTTGTTCAACTACGAACACTGGTAAAGATATGATTATTGAAGTTACTTTCTTAATTGTTGATCTTTTAGCTTTTATGCAGGATTTTCCAGATTTTGTATTACTCTCGGTATCACTTTTTAGCATAAGCTTGAAATCTTGAATTGAATGCGGTAGAGCTGAATTCAGAAGGTAAAATCTTAAAGACAGCAATCTGAGGCAGCTCACGCCGTCTTCTTCTTTTTGTTCTTCCTCTTCTCTACGTAATTGTACAGTTCAGGCTTGCAGAATACTTGTCTTTTACTGCTAAATTTTTTCCGTCCAAATGTTTATCGAAACAACAAAATAACAGTTGTTTACAGTGAGTCTCAATTATTGCAAGTTTTCTTTAACTATTTCTAAAATTGTATACTTCAATAATTTACTGATCTTTTCTATCAATCTTTTATCTTTATCCTTTTGAGGCTACTTTATTAGTAAGATCGGTAGTGATATTTCAATGAACGGATCTGTTTGTCCCATCAACGATATCTTGTCTTCAACTTGTCCAGCAGGGTCGGTTACTGCTCATATTTGGAAGCTCTACTATCACAAGCTTTGTGCAAAATATGTCAGTTATCGTTGGAAAGTTCTGGTACACATGTCTTGTGATTGTACTGTTTATATCTTTTATTTATTTGCATGCCAGTTCCATCCGTCTTCCAAGCTAGACTCATTATCTCTTTTGATCTATACTAGACAAATGATCTAAGACTTGTCAGTCGTGGATGTAATGTAATGTTTGTGATATGTTTTTGTTGTTATTTGGTACAAGTACAAATATTTTTATGCAATTCTCAGTAATACTCAAATACTACGTATGAAAGCTCTAGTCTATTTAGATTTGAAGCAAGTTAATGCATGCGGGACAGGAAATAACTCTAATGCTTGAAACTTTTAGAATTTATACCAATGTCCCTAGATATGTTTGTAATATCTTTGTAATGGAATAAATGGATTTGTTTGATGATGGGATGTGCACCTATATTTGTGTTGTGCTCACGCATTGGTCCTGGCTTAACCAGCCAACCACTGAGGCGTCTTACTTATTTTACAGGGCTCGGATTGATCTTGGTTGATGCATTTCTCAGGCCTCTTTGGTCAGTTCTGAGTTAACCCATAACATTGGCGCCACTGATGACCCGACCTATGTGGTGGTCAGGTCGATGTGTCGGCTGATTTGGATGACATCTCGGCACGCATGCGGTGGCAATGATGGATCACTTGCCCTCTGCTCCTCTGTTGGCCGGTCGATGGGGGTCGATTCTAGATTTAATAGTCACAACTCGATTTGGATGACCTTCGGGAATGCAAGTAGTTGACCACTCATGGTTTTCTCCTCAATTTGTCATCTGATGAGGGGTCAATCACTATGAGGCAATCACTTTTCTGGATTGGGTTGAGGAGACGCTCCCAGAGGTTACCATCCTTGTTGATCTAGTGGATTAAAGGTGCCAACTAATGATCTATGCAACCTTTAGATAGTGCCAAGGGGATGCTGTCAGCCCACACGCTTGGGGCTCCCATTCTCCGGCCCGTGAGGTTTGGCGGGGACAATGGTCCCATGACGTGA

mRNA sequence

ATGTATCAGGCTTCAAATTTGTTCAACTACGAACACTGGGTCGGTTACTGCTCATATTTGGAAGCTCTACTATCACAAGCTTTGTGCAAAATATGTCAGTTATCGTTGGAAAGTTCTGGGCTCGGATTGATCTTGGTTGATGCATTTCTCAGGCCTCTTTGGTCGATGTGTCGGCTGATTTGGATGACATCTCGGCACGCATGCGGTGGCAATGATGGATCACTTGCCCTCTGCTCCTCTGTTGGCCGGTCGATGGGGGTCGATTCTAGATTTAATAGTCACAACTCGATTTGGATGACCTTCGGGAATGCAAATAGTGCCAAGGGGATGCTGTCAGCCCACACGCTTGGGGCTCCCATTCTCCGGCCCGTGAGGTTTGGCGGGGACAATGGTCCCATGACGTGA

Coding sequence (CDS)

ATGTATCAGGCTTCAAATTTGTTCAACTACGAACACTGGGTCGGTTACTGCTCATATTTGGAAGCTCTACTATCACAAGCTTTGTGCAAAATATGTCAGTTATCGTTGGAAAGTTCTGGGCTCGGATTGATCTTGGTTGATGCATTTCTCAGGCCTCTTTGGTCGATGTGTCGGCTGATTTGGATGACATCTCGGCACGCATGCGGTGGCAATGATGGATCACTTGCCCTCTGCTCCTCTGTTGGCCGGTCGATGGGGGTCGATTCTAGATTTAATAGTCACAACTCGATTTGGATGACCTTCGGGAATGCAAATAGTGCCAAGGGGATGCTGTCAGCCCACACGCTTGGGGCTCCCATTCTCCGGCCCGTGAGGTTTGGCGGGGACAATGGTCCCATGACGTGA

Protein sequence

MYQASNLFNYEHWVGYCSYLEALLSQALCKICQLSLESSGLGLILVDAFLRPLWSMCRLIWMTSRHACGGNDGSLALCSSVGRSMGVDSRFNSHNSIWMTFGNANSAKGMLSAHTLGAPILRPVRFGGDNGPMT
Homology
[Close]
BLAST of CmoCh11G004340 vs. NCBI nr
Match: KAG6587793.1 (hypothetical protein SDJN03_16358, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 201.4 bits (511), Expect = 4.8e-48
Identity = 100/107 (93.46%), Postives = 101/107 (94.39%), Query Frame = 0 

Query: 1   MYQASNLFNYEHW-VGYCSYLEALLSQALCKICQLSLESSGLGLILVDAFLRPLWSMCRL 60
           MY A NLFNYEH  VGYCSYLEALLSQALCKICQLSLESSGLGLILVDAFLRPLWSMC L
Sbjct: 1   MYLAPNLFNYEHCRVGYCSYLEALLSQALCKICQLSLESSGLGLILVDAFLRPLWSMCPL 60

Query: 61  IWMTSRHACGGNDGSLALCSSVGRSMGVDSRFNSHNSIWMTFGNANS 107
           IWMTSRHACGGNDGSLALC SVGRSMGVDSRFNSHNSIWMTFGNA+S
Sbjct: 61  IWMTSRHACGGNDGSLALCFSVGRSMGVDSRFNSHNSIWMTFGNASS 107

[Close]
BLAST of CmoCh11G004340 vs. NCBI nr
Match: KAG7035703.1 (hypothetical protein SDJN02_02501, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 102.4 bits (254), Expect = 3.0e-18
Identity = 47/49 (95.92%), Postives = 47/49 (95.92%), Query Frame = 0 

Query: 56  MCRLIWMTSRHACGGNDGSLALCSSVGRSMGVDSRFNSHNSIWMTFGNA 105
           MC LIWMTSRHACGGNDGSLALC SVGRSMGVDSRFNSHNSIWMTFGNA
Sbjct: 1   MCPLIWMTSRHACGGNDGSLALCFSVGRSMGVDSRFNSHNSIWMTFGNA 49

The following BLAST results are available for this feature:
BLAST of CmoCh11G004340 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh11G004340 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh11G004340 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6587793.14.8e-4893.46hypothetical protein SDJN03_16358, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7035703.13.0e-1895.92hypothetical protein SDJN02_02501, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmoCh11G004340 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G004340.1CmoCh11G004340.1mRNA