CmoCh11G002950 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh11G002950
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	MRP-S28 domain-containing protein
Location	Cmo_Chr11: 1421292 .. 1422316 (+)
RNA-Seq Expression	CmoCh11G002950
Synteny	CmoCh11G002950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGATAGACAAGTACTTCAAAGGTGATGAGGAGGCACTACCATCAATTCTTGAAGCTATTCTTCAGAGGAAATTGGGTGGAAAGCATGAAGGTACGGATGATGAACTTGTTGAAGAACTACGAATGCAACCATTGGATGATGTGAAGGACAAAGAATTTGAATCTGATTTTGAAGAATTGTATGAGACAGATGAAGAGATTGACGATCTTTACAGTGCTAGAGATATAGTTATGAAAAAAATGGTAAAGGATGAATACTTCAACATGGATGACAAAAAATGGGATGAGCTTGTTGAGGATGCAATTAAGCATGGGATCCTGAAGGACACCAAGGAGTGTGAACAGATTTTGGAGGACATGCTTAGTTGGGACAAGCTCCTTCCAGGTTTGCCCCTTGTCTTTACATGCTTGCTTTGTCCCTTCTCGTGTTACAATTGGCTTATTTATTCTTTCTGGACTAATTTTTTTGCGAGTGGCGCATCTGCCCCGTTGCTCTGCTCATGAATTCGGTGGGTATGGTAAAAAAACTAATGAAACGAAACTGCTGATGGATACCCTTAACCTCGAATTCTAGAAACATTATGATATCGTTTGACGCCATGTATGATGTGCGTACTTAATATAAGTGATCCTTGGTTGGTATGTTGTCAAACAAATGTCTGTTTGTATGAATCCCACGTCAGTTGGGGAGGAGAATGAAGCATTCTTTACGAGGGTGTGGAAACCTCTCCCTAGTAGACGCGTTTTAAAATCTTGATGGGAAGCTCGGAAGGAAAAACCTAAAGCAGATAATATCTGCTAGCGGTGAACTTGGGTTGTTTGAACCTTGTGAGAAACAAATATGCTGCCTTAACGTTGAATCCAACTTGTGCACACTCAATCATTGTTATATTGTGTAATATCTTGAATAAATTCTCTTTGAATAATATTTTTTTCCCCTATTTCTTGGTAATGAACTGTTCACTGGATGATATGAAGAAACAAGTAGAAGCAAAATTCAACGAGCTAGGGGATTTGTGTGA

mRNA sequence

ATGAAGATAGACAAGTACTTCAAAGGTGATGAGGAGGCACTACCATCAATTCTTGAAGCTATTCTTCAGAGGAAATTGGGTGGAAAGCATGAAGGTACGGATGATGAACTTGTTGAAGAACTACGAATGCAACCATTGGATGATGTGAAGGACAAAGAATTTGAATCTGATTTTGAAGAATTGTATGAGACAGATGAAGAGATTGACGATCTTTACAGTGCTAGAGATATAGTTATGAAAAAAATGGTAAAGGATGAATACTTCAACATGGATGACAAAAAATGGGATGAGCTTGTTGAGGATGCAATTAAGCATGGGATCCTGAAGGACACCAAGGAGTGTGAACAGATTTTGGAGGACATGCTTAGTTGGGACAAGCTCCTTCCAGAAACAAGTAGAAGCAAAATTCAACGAGCTAGGGGATTTGTGTGA

Coding sequence (CDS)

ATGAAGATAGACAAGTACTTCAAAGGTGATGAGGAGGCACTACCATCAATTCTTGAAGCTATTCTTCAGAGGAAATTGGGTGGAAAGCATGAAGGTACGGATGATGAACTTGTTGAAGAACTACGAATGCAACCATTGGATGATGTGAAGGACAAAGAATTTGAATCTGATTTTGAAGAATTGTATGAGACAGATGAAGAGATTGACGATCTTTACAGTGCTAGAGATATAGTTATGAAAAAAATGGTAAAGGATGAATACTTCAACATGGATGACAAAAAATGGGATGAGCTTGTTGAGGATGCAATTAAGCATGGGATCCTGAAGGACACCAAGGAGTGTGAACAGATTTTGGAGGACATGCTTAGTTGGGACAAGCTCCTTCCAGAAACAAGTAGAAGCAAAATTCAACGAGCTAGGGGATTTGTGTGA

Protein sequence

MKIDKYFKGDEEALPSILEAILQRKLGGKHEGTDDELVEELRMQPLDDVKDKEFESDFEELYETDEEIDDLYSARDIVMKKMVKDEYFNMDDKKWDELVEDAIKHGILKDTKECEQILEDMLSWDKLLPETSRSKIQRARGFV

Homology

[Close]

BLAST of CmoCh11G002950 vs. ExPASy TrEMBL
Match: A0A6J1EY83 (uncharacterized protein LOC111439871 OS=Cucurbita moschata OX=3662 GN=LOC111439871 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 5.8e-66
Identity = 129/137 (94.16%), Postives = 134/137 (97.81%), Query Frame = 0


Query: 1   MKIDKYFKGDEEALPSILEAILQRKLGGKHEGTDDELVEELRMQPLDDVKDKEFESDFEE 60
           MKIDKYFKGDEEALPSILEAILQRKLGGKHEGTDDELVEELRMQPLDDVKDKEFESDFEE
Sbjct: 1   MKIDKYFKGDEEALPSILEAILQRKLGGKHEGTDDELVEELRMQPLDDVKDKEFESDFEE 60

Query: 61  LYETDEEIDDLYSARDIVMKKMVKDEYFNMDDKKWDELVEDAIKHGILKDTKECEQILED 120
           LYETDEEIDDLYSARDIVMKKMVKDEYFNMDDKKWDELVEDAIKHGILKDTKECEQILED
Sbjct: 61  LYETDEEIDDLYSARDIVMKKMVKDEYFNMDDKKWDELVEDAIKHGILKDTKECEQILED 120

Query: 121 MLSWDKLLPETSRSKIQ 138
           MLSWDKLLP+  + +++
Sbjct: 121 MLSWDKLLPDDMKKQVE 137

[Close]

BLAST of CmoCh11G002950 vs. ExPASy TrEMBL
Match: A0A6J1C1G2 (uncharacterized protein LOC111007394 OS=Momordica charantia OX=3673 GN=LOC111007394 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.8e-62
Identity = 122/137 (89.05%), Postives = 130/137 (94.89%), Query Frame = 0


Query: 1   MKIDKYFKGDEEALPSILEAILQRKLGGKHEGTDDELVEELRMQPLDDVKDKEFESDFEE 60
           M+I+KYFKGDEEALPSILEAILQRKL GKHE TDDEL+EELRMQPLDDVKDKEFESDFEE
Sbjct: 86  MRIEKYFKGDEEALPSILEAILQRKLAGKHEDTDDELIEELRMQPLDDVKDKEFESDFEE 145

Query: 61  LYETDEEIDDLYSARDIVMKKMVKDEYFNMDDKKWDELVEDAIKHGILKDTKECEQILED 120
           LYETDEEIDDLY+ARDIVMKKMVKDEYFNMDDKKWDELVED IKHGILKDTKECE ILED
Sbjct: 146 LYETDEEIDDLYNARDIVMKKMVKDEYFNMDDKKWDELVEDGIKHGILKDTKECEAILED 205

Query: 121 MLSWDKLLPETSRSKIQ 138
           MLSWDKLLP+  + K++
Sbjct: 206 MLSWDKLLPDEMKKKVE 222

[Close]

BLAST of CmoCh11G002950 vs. ExPASy TrEMBL
Match: A0A6J1E1S5 (uncharacterized protein LOC111430048 OS=Cucurbita moschata OX=3662 GN=LOC111430048 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 4.3e-61
Identity = 120/137 (87.59%), Postives = 130/137 (94.89%), Query Frame = 0


Query: 1   MKIDKYFKGDEEALPSILEAILQRKLGGKHEGTDDELVEELRMQPLDDVKDKEFESDFEE 60
           M+IDKYFKGDEEALPSILEAIL+RKL GKHE TDDELVEEL+MQPLDDVKDKEFESDFEE
Sbjct: 86  MRIDKYFKGDEEALPSILEAILRRKLVGKHEDTDDELVEELQMQPLDDVKDKEFESDFEE 145

Query: 61  LYETDEEIDDLYSARDIVMKKMVKDEYFNMDDKKWDELVEDAIKHGILKDTKECEQILED 120
           LYETDEEIDDLY+ RDIVMKKMVK+EYFNMDDKKWDELVED IKHGILKDTKECE+ILED
Sbjct: 146 LYETDEEIDDLYNTRDIVMKKMVKNEYFNMDDKKWDELVEDGIKHGILKDTKECEEILED 205

Query: 121 MLSWDKLLPETSRSKIQ 138
           MLSWDKLLP+  + K++
Sbjct: 206 MLSWDKLLPDDMKKKVE 222

[Close]

BLAST of CmoCh11G002950 vs. ExPASy TrEMBL
Match: A0A6J1JL06 (uncharacterized protein LOC111485553 OS=Cucurbita maxima OX=3661 GN=LOC111485553 PE=4 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 5.6e-61
Identity = 120/137 (87.59%), Postives = 130/137 (94.89%), Query Frame = 0


Query: 1   MKIDKYFKGDEEALPSILEAILQRKLGGKHEGTDDELVEELRMQPLDDVKDKEFESDFEE 60
           M+IDKYFKGDEEALPSILEAILQRKL GKHE TDDELVEEL+MQPLDDVKDKEFESDFEE
Sbjct: 86  MRIDKYFKGDEEALPSILEAILQRKLVGKHEDTDDELVEELQMQPLDDVKDKEFESDFEE 145

Query: 61  LYETDEEIDDLYSARDIVMKKMVKDEYFNMDDKKWDELVEDAIKHGILKDTKECEQILED 120
           LYETDEEID+LY+ARDIVMKKMVK+EYFNMDDKKWDELVED IKHG LKDTKECE+ILED
Sbjct: 146 LYETDEEIDNLYNARDIVMKKMVKNEYFNMDDKKWDELVEDGIKHGFLKDTKECEEILED 205

Query: 121 MLSWDKLLPETSRSKIQ 138
           MLSWDKLLP+  + K++
Sbjct: 206 MLSWDKLLPDDMKKKVE 222

[Close]

BLAST of CmoCh11G002950 vs. ExPASy TrEMBL
Match: A0A067E7F8 (MRP-S28 domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g014729mg PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 1.1e-56
Identity = 110/138 (79.71%), Postives = 128/138 (92.75%), Query Frame = 0


Query: 1   MKIDKYFKGDEEALPSILEAILQRKLGGKHEGTDDELVEELRMQPLDDVKDKEFESDFEE 60
           M+IDKYFKGDEEALPSILEAILQR+L GKHE TDDEL EELR++PLDDVKD+EFESDFEE
Sbjct: 86  MRIDKYFKGDEEALPSILEAILQRRLVGKHEETDDELTEELRLKPLDDVKDQEFESDFEE 145

Query: 61  LYETDEEIDDLYSARDIVMKKMVKDEYFNMDDKKWDELVEDAIKHGILKDTKECEQILED 120
           LY TDEEIDDLYSARD V+KKMVKDEYFNMDDKKWDE++ +A++HG LKDT+ECE+ILED
Sbjct: 146 LYATDEEIDDLYSARDHVVKKMVKDEYFNMDDKKWDEMIGEAVQHGYLKDTRECEEILED 205

Query: 121 MLSWDKLLPETSRSKIQR 139
           MLSWDKLLP+  + K+++
Sbjct: 206 MLSWDKLLPDDMKKKVEQ 223

[Close]

BLAST of CmoCh11G002950 vs. NCBI nr
Match: XP_022933107.1 (uncharacterized protein LOC111439871 [Cucurbita moschata] >XP_022933111.1 uncharacterized protein LOC111439871 [Cucurbita moschata] >XP_022933119.1 uncharacterized protein LOC111439871 [Cucurbita moschata])

HSP 1 Score: 260.0 bits (663), Expect = 1.2e-65
Identity = 129/137 (94.16%), Postives = 134/137 (97.81%), Query Frame = 0


Query: 1   MKIDKYFKGDEEALPSILEAILQRKLGGKHEGTDDELVEELRMQPLDDVKDKEFESDFEE 60
           MKIDKYFKGDEEALPSILEAILQRKLGGKHEGTDDELVEELRMQPLDDVKDKEFESDFEE
Sbjct: 1   MKIDKYFKGDEEALPSILEAILQRKLGGKHEGTDDELVEELRMQPLDDVKDKEFESDFEE 60

Query: 61  LYETDEEIDDLYSARDIVMKKMVKDEYFNMDDKKWDELVEDAIKHGILKDTKECEQILED 120
           LYETDEEIDDLYSARDIVMKKMVKDEYFNMDDKKWDELVEDAIKHGILKDTKECEQILED
Sbjct: 61  LYETDEEIDDLYSARDIVMKKMVKDEYFNMDDKKWDELVEDAIKHGILKDTKECEQILED 120

Query: 121 MLSWDKLLPETSRSKIQ 138
           MLSWDKLLP+  + +++
Sbjct: 121 MLSWDKLLPDDMKKQVE 137

[Close]

BLAST of CmoCh11G002950 vs. NCBI nr
Match: KAG7021628.1 (hypothetical protein SDJN02_15354, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 253.1 bits (645), Expect = 1.5e-63
Identity = 127/137 (92.70%), Postives = 131/137 (95.62%), Query Frame = 0


Query: 1   MKIDKYFKGDEEALPSILEAILQRKLGGKHEGTDDELVEELRMQPLDDVKDKEFESDFEE 60
           MKIDKYFKGDEEALPSILEAILQRKLGGK E TDDELVEELRMQPLDDVKDKEFESDFEE
Sbjct: 1   MKIDKYFKGDEEALPSILEAILQRKLGGKLEDTDDELVEELRMQPLDDVKDKEFESDFEE 60

Query: 61  LYETDEEIDDLYSARDIVMKKMVKDEYFNMDDKKWDELVEDAIKHGILKDTKECEQILED 120
           LYETDEEIDDLYSARDIVMKKMVKDEYFNMDDKKWDELVED IKHGILKDTKECEQILED
Sbjct: 61  LYETDEEIDDLYSARDIVMKKMVKDEYFNMDDKKWDELVEDGIKHGILKDTKECEQILED 120

Query: 121 MLSWDKLLPETSRSKIQ 138
           MLSWDKLLP+  + K++
Sbjct: 121 MLSWDKLLPDDMKKKVE 137

[Close]

BLAST of CmoCh11G002950 vs. NCBI nr
Match: XP_022135439.1 (uncharacterized protein LOC111007394 [Momordica charantia])

HSP 1 Score: 248.4 bits (633), Expect = 3.6e-62
Identity = 122/137 (89.05%), Postives = 130/137 (94.89%), Query Frame = 0


Query: 1   MKIDKYFKGDEEALPSILEAILQRKLGGKHEGTDDELVEELRMQPLDDVKDKEFESDFEE 60
           M+I+KYFKGDEEALPSILEAILQRKL GKHE TDDEL+EELRMQPLDDVKDKEFESDFEE
Sbjct: 86  MRIEKYFKGDEEALPSILEAILQRKLAGKHEDTDDELIEELRMQPLDDVKDKEFESDFEE 145

Query: 61  LYETDEEIDDLYSARDIVMKKMVKDEYFNMDDKKWDELVEDAIKHGILKDTKECEQILED 120
           LYETDEEIDDLY+ARDIVMKKMVKDEYFNMDDKKWDELVED IKHGILKDTKECE ILED
Sbjct: 146 LYETDEEIDDLYNARDIVMKKMVKDEYFNMDDKKWDELVEDGIKHGILKDTKECEAILED 205

Query: 121 MLSWDKLLPETSRSKIQ 138
           MLSWDKLLP+  + K++
Sbjct: 206 MLSWDKLLPDEMKKKVE 222

[Close]

BLAST of CmoCh11G002950 vs. NCBI nr
Match: KAG6589616.1 (hypothetical protein SDJN03_15039, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 245.4 bits (625), Expect = 3.1e-61
Identity = 121/137 (88.32%), Postives = 131/137 (95.62%), Query Frame = 0


Query: 1   MKIDKYFKGDEEALPSILEAILQRKLGGKHEGTDDELVEELRMQPLDDVKDKEFESDFEE 60
           M+IDKYFKGDEEALPSILEAIL+RKL GKHE TDDELVEEL+MQPLDDVKDKEFESDFEE
Sbjct: 86  MRIDKYFKGDEEALPSILEAILRRKLVGKHEDTDDELVEELQMQPLDDVKDKEFESDFEE 145

Query: 61  LYETDEEIDDLYSARDIVMKKMVKDEYFNMDDKKWDELVEDAIKHGILKDTKECEQILED 120
           LYETDEEIDDLY+ARDIVMKKMVK+EYFNMDDKKWDELVED IKHGILKDTKECE+ILED
Sbjct: 146 LYETDEEIDDLYNARDIVMKKMVKNEYFNMDDKKWDELVEDGIKHGILKDTKECEEILED 205

Query: 121 MLSWDKLLPETSRSKIQ 138
           MLSWDKLLP+  + K++
Sbjct: 206 MLSWDKLLPDDMKKKVE 222

[Close]

BLAST of CmoCh11G002950 vs. NCBI nr
Match: KAG7023307.1 (hypothetical protein SDJN02_14332, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 243.8 bits (621), Expect = 8.9e-61
Identity = 120/137 (87.59%), Postives = 130/137 (94.89%), Query Frame = 0


Query: 1   MKIDKYFKGDEEALPSILEAILQRKLGGKHEGTDDELVEELRMQPLDDVKDKEFESDFEE 60
           M+IDKYFKGDEEALPSILEAIL+RKL GKHE TDDELVEEL+MQPLDDVKDKEFESDFEE
Sbjct: 1   MRIDKYFKGDEEALPSILEAILRRKLVGKHEDTDDELVEELQMQPLDDVKDKEFESDFEE 60

Query: 61  LYETDEEIDDLYSARDIVMKKMVKDEYFNMDDKKWDELVEDAIKHGILKDTKECEQILED 120
           LYETDEEIDDLY+ RDIVMKKMVK+EYFNMDDKKWDELVED IKHGILKDTKECE+ILED
Sbjct: 61  LYETDEEIDDLYNTRDIVMKKMVKNEYFNMDDKKWDELVEDGIKHGILKDTKECEEILED 120

Query: 121 MLSWDKLLPETSRSKIQ 138
           MLSWDKLLP+  + K++
Sbjct: 121 MLSWDKLLPDDMKKKVE 137

[Close]

BLAST of CmoCh11G002950 vs. TAIR 10
Match: AT3G18240.1 (Ribosomal protein S24/S35, mitochondrial )

HSP 1 Score: 167.2 bits (422), Expect = 9.9e-42
Identity = 79/138 (57.25%), Postives = 112/138 (81.16%), Query Frame = 0


Query: 2   KIDKYF-KGDEEALPSILEAILQRKLGGKHEGTDDELVEELRMQPL-DDVKDKEFESDFE 61
           +I+KYF +G+E+ALP ++EA+LQR+L  KH  TDDEL+E++   P  DDVKD++FESDFE
Sbjct: 85  RIEKYFNEGNEDALPGVIEALLQRRLVDKHAETDDELLEKIESLPFKDDVKDEDFESDFE 144

Query: 62  ELYETDEEIDDLYSARDIVMKKMVKDEYFNMDDKKWDELVEDAIKHGILKDTKECEQILE 121
           E + TDEE++DLY++ + V +KM K+E+FNMDDKKWD ++ + I+HG L DTKECE+ILE
Sbjct: 145 EAHSTDEELEDLYNSPEYVAEKMRKNEFFNMDDKKWDHMIREGIQHGCLTDTKECEEILE 204

Query: 122 DMLSWDKLLPETSRSKIQ 138
           DML WD+LLP+  + K++
Sbjct: 205 DMLKWDQLLPDDLKKKVE 222

[Close]

BLAST of CmoCh11G002950 vs. TAIR 10
Match: AT3G18240.2 (Ribosomal protein S24/S35, mitochondrial )

HSP 1 Score: 167.2 bits (422), Expect = 9.9e-42
Identity = 79/138 (57.25%), Postives = 112/138 (81.16%), Query Frame = 0


Query: 2   KIDKYF-KGDEEALPSILEAILQRKLGGKHEGTDDELVEELRMQPL-DDVKDKEFESDFE 61
           +I+KYF +G+E+ALP ++EA+LQR+L  KH  TDDEL+E++   P  DDVKD++FESDFE
Sbjct: 85  RIEKYFNEGNEDALPGVIEALLQRRLVDKHAETDDELLEKIESLPFKDDVKDEDFESDFE 144

Query: 62  ELYETDEEIDDLYSARDIVMKKMVKDEYFNMDDKKWDELVEDAIKHGILKDTKECEQILE 121
           E + TDEE++DLY++ + V +KM K+E+FNMDDKKWD ++ + I+HG L DTKECE+ILE
Sbjct: 145 EAHSTDEELEDLYNSPEYVAEKMRKNEFFNMDDKKWDHMIREGIQHGCLTDTKECEEILE 204

Query: 122 DMLSWDKLLPETSRSKIQ 138
           DML WD+LLP+  + K++
Sbjct: 205 DMLKWDQLLPDDLKKKVE 222

[Close]

BLAST of CmoCh11G002950 vs. TAIR 10
Match: AT4G21460.1 (Ribosomal protein S24/S35, mitochondrial )

HSP 1 Score: 161.4 bits (407), Expect = 5.4e-40
Identity = 77/138 (55.80%), Postives = 109/138 (78.99%), Query Frame = 0


Query: 2   KIDKYF-KGDEEALPSILEAILQRKLGGKHEGTDDELVEELRMQPL-DDVKDKEFESDFE 61
           +IDK F +G+E+ALP ++EA+LQR+L  KH  TDDEL+E++   P  DDVKD++FESDFE
Sbjct: 81  RIDKSFNEGNEDALPGVIEALLQRRLVDKHAETDDELMEKIESLPFKDDVKDEDFESDFE 140

Query: 62  ELYETDEEIDDLYSARDIVMKKMVKDEYFNMDDKKWDELVEDAIKHGILKDTKECEQILE 121
           E + TDEE++DLY++ + V +KM K E+FNMDD KWD ++ + I+HG L DTK+CE+ILE
Sbjct: 141 EAHSTDEELEDLYNSPEYVAEKMRKKEFFNMDDNKWDHMIREGIQHGCLTDTKQCEEILE 200

Query: 122 DMLSWDKLLPETSRSKIQ 138
           DML WD+LLP+  + K++
Sbjct: 201 DMLKWDQLLPDDLKKKVE 218

[Close]

BLAST of CmoCh11G002950 vs. TAIR 10
Match: AT1G73770.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: Ribosomal protein S24/S35, mitochondrial (TAIR:AT3G18240.2); Has 951 Blast hits to 569 proteins in 87 species: Archae - 0; Bacteria - 746; Metazoa - 33; Fungi - 46; Plants - 57; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink). )

HSP 1 Score: 48.1 bits (113), Expect = 6.7e-06
Identity = 27/69 (39.13%), Postives = 46/69 (66.67%), Query Frame = 0


Query: 9   GDEEALPSILEAILQRKLGGKHEGTDDELVEELRMQPLDDV-KDKEFESDFE-----ELY 68
           G+E+A+P + EA++ RKL GKH+ +DDE+++ +R  P++D  K  + +SD E     +  
Sbjct: 80  GNEDAIPDLFEALMIRKLSGKHDDSDDEVMDVVRKYPVNDAHKVDDIDSDIESDGHGDSS 139

Query: 69  ETDEEIDDL 72
           ++D E DDL
Sbjct: 140 DSDIESDDL 148

[Close]

BLAST of CmoCh11G002950 vs. TAIR 10
Match: AT1G73770.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: Ribosomal protein S24/S35, mitochondrial (TAIR:AT3G18240.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 48.1 bits (113), Expect = 6.7e-06
Identity = 27/69 (39.13%), Postives = 46/69 (66.67%), Query Frame = 0


Query: 9   GDEEALPSILEAILQRKLGGKHEGTDDELVEELRMQPLDDV-KDKEFESDFE-----ELY 68
           G+E+A+P + EA++ RKL GKH+ +DDE+++ +R  P++D  K  + +SD E     +  
Sbjct: 80  GNEDAIPDLFEALMIRKLSGKHDDSDDEVMDVVRKYPVNDAHKVDDIDSDIESDGHGDSS 139

Query: 69  ETDEEIDDL 72
           ++D E DDL
Sbjct: 140 DSDIESDDL 148

The following BLAST results are available for this feature:

BLAST of CmoCh11G002950 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh11G002950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EY83	5.8e-66	94.16	uncharacterized protein LOC111439871 OS=Cucurbita moschata OX=3662 GN=LOC1114398...	[more]
A0A6J1C1G2	1.8e-62	89.05	uncharacterized protein LOC111007394 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A6J1E1S5	4.3e-61	87.59	uncharacterized protein LOC111430048 OS=Cucurbita moschata OX=3662 GN=LOC1114300...	[more]
A0A6J1JL06	5.6e-61	87.59	uncharacterized protein LOC111485553 OS=Cucurbita maxima OX=3661 GN=LOC111485553...	[more]
A0A067E7F8	1.1e-56	79.71	MRP-S28 domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g014729mg...	[more]

BLAST of CmoCh11G002950 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933107.1	1.2e-65	94.16	uncharacterized protein LOC111439871 [Cucurbita moschata] >XP_022933111.1 unchar...	[more]
KAG7021628.1	1.5e-63	92.70	hypothetical protein SDJN02_15354, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022135439.1	3.6e-62	89.05	uncharacterized protein LOC111007394 [Momordica charantia]	[more]
KAG6589616.1	3.1e-61	88.32	hypothetical protein SDJN03_15039, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7023307.1	8.9e-61	87.59	hypothetical protein SDJN02_14332, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CmoCh11G002950 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18240.1	9.9e-42	57.25	Ribosomal protein S24/S35, mitochondrial	[more]
AT3G18240.2	9.9e-42	57.25	Ribosomal protein S24/S35, mitochondrial	[more]
AT4G21460.1	5.4e-40	55.80	Ribosomal protein S24/S35, mitochondrial	[more]
AT1G73770.1	6.7e-06	39.13	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT1G73770.2	6.7e-06	39.13	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR039848	Ribosomal protein S24/S35, mitochondrial	PANTHER	PTHR13490	MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S28	coord: 3..137

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G002950.1	CmoCh11G002950.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032543	mitochondrial translation
cellular_component	GO:0005763	mitochondrial small ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome