CmoCh09G013110 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh09G013110
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionankyrin repeat-containing protein BDA1-like
LocationCmo_Chr09: 11762276 .. 11767077 (-)
RNA-Seq ExpressionCmoCh09G013110
SyntenyCmoCh09G013110
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAACAGTTTCACCATTGTGATGCTTCATCCAAAGAGATTGTGGCCTCACATTGATCAACCGTTGCATGATATCAATTTTTCCATTAATCACTGCATGATGGAGAAGAATCAACCCATTCAAATCACTAATCATGCAAGTGCTTGTGTTTTTCTCCAGCAAAGCTTGACAAATCTCATCCGTTCCATTTTCAGAAGCTAAGTGGAGAGGTGTCCTTTGCAGGGCATCAACTTCACCAGCAAGTTCAGGCATGAGATTTAAAAGAAATTGAGTGAATGCAAGGTGGCAATGCAAAACCGAGATGTGCAATAGAGTCTCGATGTTGTACGAGGAGATTAAAACTCTTTGAATGATCTTCGGGTTGCTTTGAATTAGTGTTTCTAAGCTTTGAATGGACCTGATCTTCATAGAGGAATCGTTTGCTTTTTTCAATTGATGACATGGCTAATCCATTTGCAATATTGGAAGATTGTGTGAGTTGTTGATGAGCTGCCTCCATTTTTTAATATCTAGCTTACTTTGAGATGGAGTATTACTATAGAATTTATAAGCCAATTTTTTGTTTGAATTATTTATTTATTTGTAATATATGGTGATGCTTTCAACTCAATTAATGTTGACATTTTGAGTTATTTAAATAGTTTAGTTGTTGCAATCACTTTCTATAAAATAAAAATATAAAAAAACATTATTTAAGTGAAAACAAAATATCACTATCTTAATTAAGGTGGATGATAAATAGAGAGGTGTATTTTACCCTTGGGCGAGGGATTCCTGTTTAGACCAGAAACAAGGGAAGGAGTGGGGAACATTTTTATTCCGTTAGATAAAAGGGGTTGAAAATATCGCCCCGTCCTCACCCCTTTAATATAAAATATATTTTCAACACATTAATAAACTAATCTTAAAAAATAAATTAACGTAAGAGAGATGTCATTTGAAAATGTTAGTAATTAAATTTTGTCTATGGGTTATAGACCCAACACCCTTCCGCTGTGCCACTCTAATTTGTTAGAAAGGAGGATGAGCTATTGTGATCTATGCTCCAAGGTGAATTAAGGATGTTGTCTTCCCGTTGAGCTTGTTTGCTTGTATTTTGCATGATACAGTATATGTTAGCTCCAGGTGTTTGATAGTGTGTTCTCCCTATCTAGCGTGTTTATCTACACAGAGCTAGGGTGTAAGAGTTAGGTTGGTTATACCATGATTTAGGTCAAGATGTGTACATTAGACTAAGCACCTTAGGATTGTGGCCATGTTAAGAGGAAATAGACTTTATTACTGCAGGACTAAAGAAAGAGTTGAGGAGTCAGAATAGAGTAACCTGGAACCAAAAGCTTGTGTTAAGCAACCTAGCTGGCCTAGGAATCCAATAAACCTCTTCAACTCCTAGACATTCCAGGAATAAAGAAAGAGTCGAGGACTAAAAGCTTTTCAAAGGGGCATGGGTTCGAATCCCATTTTTAATAAGCAATGTATCGATGGTGGGCAACAATCTGTAATGCTTTGGAGTCATATCACACGCTCTTCCTTTCAAATTTTAAATGTCATTGTAAAACAATTTTCTCTATCAAAGCCAAATTTCAATCCTAGGACCTATGGGTTTATGGGCCCACCAAGCTTCCGCTACACCACTTAGATTTGTTATAAATGAGGATGAGCTATTGTAATTTGGGATCCAGGGTGATTTTTGGATATTATCTTCCCGTTGAGCTTGTTTGCTTGTCTTGTGCACGATACAGTATGTATTAGCTCCAGGTGTTTTTTTGGATATTATCTTCCCGTTGAGCTTGTTTGCTTGTATTGTGCACGATATAGTATGTATTATGTTAGTTCTGACATTATAATATGTTAGAAAACTTGGAAAAAAGGTAAACCTTCGAAATTACGCATGATATTAGAGGCCACGTCCTAATTTTTTAGACATCAAATAATATCTTGACAAAACTTCAAGCATTTGATATTCAAGGCGGTCTGATTTTTAACTTCAGCTTACCACATCTTGAAGGCAGCAAACACATCTGACTTGTGTTTCAAGAGATAAACTCATACCGTCCTACTGAAATCATCGATGAAGGTGACGTAGAACTTTGATTCACCAAGTGATGAAAATGGAGATGGTCCCCAAACATTTGTATAGACCATTTTCAATCGCACTTTTTTTGGTTCTCTAGCAGCATTTGTGAAGCTAACTCGTTTTTGTTTGCCCATAACGAAGCTCTCATAAAGACTCGTATGAACAAATTTTTCGGTCTTCTAAAACTCCTTTCACAGCCAGCATCTTCATTCCTTTGACGCTCATATGTTCAAGTCTATTGTGTCATAGACTTGAATTGAAAGCACTCTCAACAAAAGTAACCATGTTTATACACCCTGCATGGTGTATAGGGTTCTATATTTTATGTAACATGCTACCACCATGGTATCCTTCACAATCTTCCACAAACTGTTTCCAAACTTGGCTGCATAACCTGTGCTATCCAACTGACCAATAGAGATCATGTTCTTCTTGAGACCACGAATATATCTGACATCCCTTAATGTCCACTAATTTCTTGCTTGAGTTTGTATGCCTTCATCTCATTTTCCTTCAATCACCAAATCTTTGTTGTCGACAAGATACACCTTCTCAAAATTTCAAGACTTCAAATTTCGAAACAGCTATTTATTTGGAGACGAATTAAAAGATGATCCAAAATCTAGAATTCAATTGGACTATTCACACGGAGGATTAGAGCATTCCCAATATCTTCCGCTGAATTTATAGAATTATTATCATCCTTCGATTTGTGATCTTGCTTCCTCTTATGTATTGTAAAATTTGTCCGAAATTGATTTTTTTCTCTACAACTCCAACACATCATGTTTGGTCTGTTTGGAAAATTTTCACGGTTCTTTGATTTTGATCGATATTTTTTTGGGCCCTTCGATCTACTTCTTCCCCTTTGGTCAAAGACTAACAGCACTACGAGAAGAATCCTCAATTTCTCGTTTGAGAATACTTTTGTTGAGAACTACATCTCGGATTTCATCAAACTTCAGTTTCTTAAATCCTCAAGAACTGCTGGTCGCGAAAACAACAACATCCCATGACTTGGGTAAAGATGACATCAAAATCAATGCTTTAATTTCATCCTCGAAATTAATTTCCACCGAACTCAATTGACTTACAATCATATTGAACTCATTTATATGATCATCAACCGATCCACCTTCAGACATTTATGACAGCACTACCCAATAGTTATATATATGGTTTCAATTTACTATATATAATTTTAACAGATATAACCACCTATTATATGTAAATATTTTTATTATAAATAGTAGACCGACTCCATAACCCAACATTATCAAATCAATTTTCGTTTTTAATTATTACGAAAATGTTGTATGAAGAACTATTTTGAAACAAATTTAAGGATAAAAGTGAAACTTTTCTAGAAAAATCTATCTCTAAATTTAACAAGTGTGGTATAATTTAACTTAACCACAATCACACAAGGTGTTATCCTTACAGATGAGGAACCATAGTTTCCCAATAAAATTAAGTTAAATAAATAATAATATATACATCTATCCATGATTCAACCAAGAATTTTCCTTCCGTTTACTTCACATTCACTTAAACTAGGAAGGTGACACTTTGGTGTCCCTCTCAAGTGAAAGTATAAATAATAATTTTTTTCAAAGAAACGAGGGTAATAATTGGACTATTTAAAAAATTTAAAAGGTCAACTTTAACTTAGTTGGAAGCCTCACCTTCTATAAAAAAAAAAAATAAAATAATAATCAATAAAATCTTATAAATTTTATGTGAAAACCCCATTCGGAATAAGTTAGAGAATCAATAATGGAAGCAAATGGAGAAAACAACGAATTTAGATTAGTCATTTCCTCTATTGAAGAAAGTAAAAAAAAGCTCTAAGAGGCATAAAAGATTGGGTCCATTCAAAGCTTGAAGACACTCATTCGAGGCGACATAAATATCATTCAAAGAGTTCTAATCTCCTCTTCCAACGTTGAGAGTCCATTGCATGTCTAAATGTTGTATGAAGAACTATTTTAAAACAAATTTAAGGGTAAAAGTGAAACTTTTCTAGAAAAATATATCTCTAAATTTAACAAGTGTGGTATAATTGAACTTAATCACAATCACACAAAGCATTATCCTTACCGATGAGAAACTATAGCTTCCCAATAAAATTAAGCGAAATAAATAATAATATATACATCTATCCATGATTCGCCTAAGAATTTTCCTTCTGTTTGCTTCACATTCACTTAAACTAGGATGGTGACATTTTGGTGTCCCTCTCAAATGAAAGTATAAATAATAATTTTTTTTTTAAGAAATGAGGGTAATAATTGGACTATTTTAAAAATTCAAAAGGTCAACTTTAACTTAGTTGGAAGCCTCGCCATCTATAAAAAAAAAAAATAATCAACCAAATCTTATAAATTTTATGTGAAAACCCCATTCGGAAGTAAGAGAATCAATAATGGAGGCAAATGGAGAAAACAACGAACTTAGATTAGTCATTTCCTCTATTGAAGAAAGTAAAAGAAAGCTCTACGAGGCATAAAAGATTGGATCCATTCAAAAATTGAAGACACTAATTCAAGGCGACCTAAATATCATTCAAAGAGTTCTAATCTCCTCTTCCAACGTTGAGAGTCCATTGCATGTCTCAGTTTTGCATCACCATCTTGAATTCACTCAATTTCTATTGAATCTCGAGCCTAAACTTGAGAAGTTGATGACCTATAAAAGACACCTCTCCACTTGGTCGAATTGA

mRNA sequence

ATGAAGAACAGTTTCACCATTGTGATGCTTCATCCAAAGAGATTGTGGCCTCACATTGATCAACCGTTGCATGATATCAATTTTTCCATTAATCACTGCATGATGGAGAAGAATCAACCCATTCAAATCACTAATCATGCAACAAAGCTTGACAAATCTCATCCGTTCCATTTTCAGAAGCTAAGTGGAGAGGTGTCCTTTGCAGGGCATCAACTTCACCAGCAAACACTAATTCAAGGCGACCTAAATATCATTCAAAGAGTTCTAATCTCCTCTTCCAACGTTGAGAGTCCATTGCATGTCTCAGTTTTGCATCACCATCTTGAATTCACTCAATTTCTATTGAATCTCGAGCCTAAACTTGAGAAGTTGATGACCTATAAAAGACACCTCTCCACTTGGTCGAATTGA

Coding sequence (CDS)

ATGAAGAACAGTTTCACCATTGTGATGCTTCATCCAAAGAGATTGTGGCCTCACATTGATCAACCGTTGCATGATATCAATTTTTCCATTAATCACTGCATGATGGAGAAGAATCAACCCATTCAAATCACTAATCATGCAACAAAGCTTGACAAATCTCATCCGTTCCATTTTCAGAAGCTAAGTGGAGAGGTGTCCTTTGCAGGGCATCAACTTCACCAGCAAACACTAATTCAAGGCGACCTAAATATCATTCAAAGAGTTCTAATCTCCTCTTCCAACGTTGAGAGTCCATTGCATGTCTCAGTTTTGCATCACCATCTTGAATTCACTCAATTTCTATTGAATCTCGAGCCTAAACTTGAGAAGTTGATGACCTATAAAAGACACCTCTCCACTTGGTCGAATTGA

Protein sequence

MKNSFTIVMLHPKRLWPHIDQPLHDINFSINHCMMEKNQPIQITNHATKLDKSHPFHFQKLSGEVSFAGHQLHQQTLIQGDLNIIQRVLISSSNVESPLHVSVLHHHLEFTQFLLNLEPKLEKLMTYKRHLSTWSN
Homology
[Close]
BLAST of CmoCh09G013110 vs. ExPASy TrEMBL
Match: A0A6J1EC63 (ankyrin repeat-containing protein BDA1-like OS=Cucurbita moschata OX=3662 GN=LOC111432738 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 4.2e-13
Identity = 45/58 (77.59%), Postives = 48/58 (82.76%), Query Frame = 0 

Query: 64  EVSFAGHQLHQQTLIQGDLNIIQRVLISSSNVESPLHVSVLHHHLEFTQFLLNLEPKL 122
           E S  G     +TLI+GD NIIQRVLISSSNVESPLHVSVLHHHLEFTQFLLNL P+L
Sbjct: 26  EASKIGSIQSLKTLIRGDPNIIQRVLISSSNVESPLHVSVLHHHLEFTQFLLNLVPEL 83

[Close]
BLAST of CmoCh09G013110 vs. ExPASy TrEMBL
Match: A0A6J1IG24 (ankyrin repeat-containing protein BDA1-like OS=Cucurbita maxima OX=3661 GN=LOC111472565 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.2e-12
Identity = 44/58 (75.86%), Postives = 48/58 (82.76%), Query Frame = 0 

Query: 64  EVSFAGHQLHQQTLIQGDLNIIQRVLISSSNVESPLHVSVLHHHLEFTQFLLNLEPKL 122
           E S  G     +TLI+GD NIIQRVLISSSNVESPLHVSVLHHHLEFT+FLLNL P+L
Sbjct: 26  EASKIGSIQSLKTLIRGDPNIIQRVLISSSNVESPLHVSVLHHHLEFTRFLLNLVPEL 83

[Close]
BLAST of CmoCh09G013110 vs. ExPASy TrEMBL
Match: A0A6J1EC78 (uncharacterized protein LOC111432735 OS=Cucurbita moschata OX=3662 GN=LOC111432735 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.9e-10
Identity = 42/58 (72.41%), Postives = 46/58 (79.31%), Query Frame = 0 

Query: 64  EVSFAGHQLHQQTLIQGDLNIIQRVLISSSNVESPLHVSVLHHHLEFTQFLLNLEPKL 122
           E S  G     +TLI+GD NII+RVLISSSNVESPL+VSVLH HLEFT FLLNL PKL
Sbjct: 65  EASKIGSIQSLKTLIRGDPNIIERVLISSSNVESPLYVSVLHCHLEFTLFLLNLVPKL 122

[Close]
BLAST of CmoCh09G013110 vs. ExPASy TrEMBL
Match: A0A6J1EBP6 (ankyrin repeat-containing protein BDA1-like OS=Cucurbita moschata OX=3662 GN=LOC111432737 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.6e-09
Identity = 40/63 (63.49%), Postives = 48/63 (76.19%), Query Frame = 0 

Query: 59  QKLSGEVSFAGHQLHQQTLIQGDLNIIQRVLISSSNVESPLHVSVLHHHLEFTQFLLNLE 118
           ++L  E S  G     +TLIQ + NIIQRVLISS N+E+PL+VSVLH HLEFTQFLLNL 
Sbjct: 32  KQLLYEASKIGSIQSLETLIQNNSNIIQRVLISSYNIETPLYVSVLHCHLEFTQFLLNLM 91

Query: 119 PKL 122
           P+L
Sbjct: 92  PEL 94

[Close]
BLAST of CmoCh09G013110 vs. ExPASy TrEMBL
Match: A0A6J1D887 (ankyrin repeat-containing protein NPR4-like OS=Momordica charantia OX=3673 GN=LOC111018270 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.4e-07
Identity = 38/59 (64.41%), Postives = 45/59 (76.27%), Query Frame = 0 

Query: 64  EVSFAGHQLHQQTLIQGDLNIIQRVLI-SSSNVESPLHVSVLHHHLEFTQFLLNLEPKL 122
           E S  G     +TLIQ D +IIQ+VLI SSSN ESPLHVSVLH  LEFT+FLL+L+P+L
Sbjct: 38  EASKIGSIQSLETLIQEDPHIIQKVLISSSSNTESPLHVSVLHGQLEFTRFLLDLKPEL 96

The following BLAST results are available for this feature:
BLAST of CmoCh09G013110 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh09G013110 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1EC634.2e-1377.59ankyrin repeat-containing protein BDA1-like OS=Cucurbita moschata OX=3662 GN=LOC... [more]
A0A6J1IG241.2e-1275.86ankyrin repeat-containing protein BDA1-like OS=Cucurbita maxima OX=3661 GN=LOC11... [more]
A0A6J1EC781.9e-1072.41uncharacterized protein LOC111432735 OS=Cucurbita moschata OX=3662 GN=LOC1114327... [more]
A0A6J1EBP61.6e-0963.49ankyrin repeat-containing protein BDA1-like OS=Cucurbita moschata OX=3662 GN=LOC... [more]
A0A6J1D8873.4e-0764.41ankyrin repeat-containing protein NPR4-like OS=Momordica charantia OX=3673 GN=LO... [more]
BLAST of CmoCh09G013110 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh09G013110.1CmoCh09G013110.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane