CmoCh09G012390 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh09G012390
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Reverse transcriptase
Location	Cmo_Chr09: 10638698 .. 10640050 (+)
RNA-Seq Expression	CmoCh09G012390
Synteny	CmoCh09G012390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCACTAGCGAAATGCTTGGTGATCATTGAACGCAATTCCACAGTAATACCTGCAAGCATCAAACAGCCAGGTAATCTTAGAATGATTTCGGCCATACAATTGAAAAGAGGGCTCGCACGAGAGGAACCTACATTTATGACTATACCACTGATGGAAGAAGTGACTACTGAGGAAACTATCCCAGACGAAATCAAGGAGGTATTAAACAGTTACGCTGATATAATGTCAGAGAGCCTACCACAAACATTACCACCCCGTCGAGGCATTGATCACGAAATTGAACTCCTTCCCGAGGTTAAACCCCCAGCGAAGAATGCATACTGGATGGCTCCCCTTGAGCTAGCCGAATTGAGGAAACAACTAGATGAGTTGTTGACGGCAGGATTCATTTGCCCGGCAAAAGCACCTTACGGAGCCCCCGTACTATTTCAGAAAAAGAAGGATGGGACGTTGCGCCTGTGCATAGATTATAGAGCCTTAAACAAGGTGACGGTACACAACAAGTACCCACTGCTGATAATATCTGACTTGTTCGACCAACTTCATGGGGCCAAATACTTCACGAAGTTGGACATACGATCAGGGTACTACCAAGTACGTATCGCCGAGGGGGACGAGTCCAAGACGACGTTCATGACAAGATATGGGGCCTTCGAGTTCCTGGTGATGCCCTTTGGCTTGACAAACGCCCCAGCTACGTTTTACATGTTAATGAACCTGGTTTTCTACGAATACTTGGATCAGTTTGTCATAGTATCCCTCGATGACATAGTTGTATACAGCACAACCTTAGAGGAACACAAGGTACACTTGAAGCTTGTATTTGACAAGCTGCGGCAGAATCAGTTGTACGTCAAGAAAGAAAAATGTGCCTTCGCACAGACATGCATCAACTTCCTCGAACATGTCATCAGTTGTGGACAGATTGGGATGGATAGCGATAAGATAAAAGCTATCCAAGAGTGGAAAGTCCCTACTTCCGTATCCGATGTGCGATCCTTCTTAGGATTAGCAAACTACTATAGGCGGTTCGTCGAAGGGTTTTCACGACGAGCCACCCCCTTAACGGAGCTCCTGAAGAAAGACCACCCTTGGTCGTGGTCAAATAAATGTCAAATGGCCTTTGAAGATCTGAAGACAACCATGACGAGGGGTCCTGCCTTCGAGTTAGTAGATGTTACAAAGTCATTTGAAATAGAAACAAATGCTTCTGACTTTGCCCTAGGCGATGTCCTTATTCAAGAAGGGCGCCCCATCGCTTATGAAAGTCGAAAGCTCAATGATGCCGAACGGAGATACACTGTCTCCGAAAAGGAAATGCTAGCTTTAGTTCATTGCCTACGAGTCTAG

mRNA sequence

ATGCCACTAGCGAAATGCTTGGTGATCATTGAACGCAATTCCACAGTAATACCTGCAAGCATCAAACAGCCAGGTAATCTTAGAATGATTTCGGCCATACAATTGAAAAGAGGGCTCGCACGAGAGGAACCTACATTTATGACTATACCACTGATGGAAGAAGTGACTACTGAGGAAACTATCCCAGACGAAATCAAGGAGGTATTAAACAGTTACGCTGATATAATGTCAGAGAGCCTACCACAAACATTACCACCCCGTCGAGGCATTGATCACGAAATTGAACTCCTTCCCGAGGTTAAACCCCCAGCGAAGAATGCATACTGGATGGCTCCCCTTGAGCTAGCCGAATTGAGGAAACAACTAGATGAGTTGTTGACGGCAGGATTCATTTGCCCGGCAAAAGCACCTTACGGAGCCCCCGTACTATTTCAGAAAAAGAAGGATGGGACGTTGCGCCTGTGCATAGATTATAGAGCCTTAAACAAGGTGACGGTACACAACAAGTACCCACTGCTGATAATATCTGACTTGTTCGACCAACTTCATGGGGCCAAATACTTCACGAAGTTGGACATACGATCAGGGTACTACCAAGTACGTATCGCCGAGGGGGACGAGTCCAAGACGACGTTCATGACAAGATATGGGGCCTTCGAGTTCCTGGTGATGCCCTTTGGCTTGACAAACGCCCCAGCTACGTTTTACATGTTAATGAACCTGGTTTTCTACGAATACTTGGATCAGTTTGTCATAGTATCCCTCGATGACATAGTTGTATACAGCACAACCTTAGAGGAACACAAGGTACACTTGAAGCTTGTATTTGACAAGCTGCGGCAGAATCAGTTGTACGTCAAGAAAGAAAAATGTGCCTTCGCACAGACATGCATCAACTTCCTCGAACATGTCATCAGTTGTGGACAGATTGGGATGGATAGCGATAAGATAAAAGCTATCCAAGAGTGGAAAGTCCCTACTTCCGTATCCGATGTGCGATCCTTCTTAGGATTAGCAAACTACTATAGGCGGTTCGTCGAAGGGTTTTCACGACGAGCCACCCCCTTAACGGAGCTCCTGAAGAAAGACCACCCTTGGTCGTGGTCAAATAAATGTCAAATGGCCTTTGAAGATCTGAAGACAACCATGACGAGGGGTCCTGCCTTCGAGTTAGTAGATGTTACAAAGTCATTTGAAATAGAAACAAATGCTTCTGACTTTGCCCTAGGCGATGTCCTTATTCAAGAAGGGCGCCCCATCGCTTATGAAAGTCGAAAGCTCAATGATGCCGAACGGAGATACACTGTCTCCGAAAAGGAAATGCTAGCTTTAGTTCATTGCCTACGAGTCTAG

Coding sequence (CDS)

ATGCCACTAGCGAAATGCTTGGTGATCATTGAACGCAATTCCACAGTAATACCTGCAAGCATCAAACAGCCAGGTAATCTTAGAATGATTTCGGCCATACAATTGAAAAGAGGGCTCGCACGAGAGGAACCTACATTTATGACTATACCACTGATGGAAGAAGTGACTACTGAGGAAACTATCCCAGACGAAATCAAGGAGGTATTAAACAGTTACGCTGATATAATGTCAGAGAGCCTACCACAAACATTACCACCCCGTCGAGGCATTGATCACGAAATTGAACTCCTTCCCGAGGTTAAACCCCCAGCGAAGAATGCATACTGGATGGCTCCCCTTGAGCTAGCCGAATTGAGGAAACAACTAGATGAGTTGTTGACGGCAGGATTCATTTGCCCGGCAAAAGCACCTTACGGAGCCCCCGTACTATTTCAGAAAAAGAAGGATGGGACGTTGCGCCTGTGCATAGATTATAGAGCCTTAAACAAGGTGACGGTACACAACAAGTACCCACTGCTGATAATATCTGACTTGTTCGACCAACTTCATGGGGCCAAATACTTCACGAAGTTGGACATACGATCAGGGTACTACCAAGTACGTATCGCCGAGGGGGACGAGTCCAAGACGACGTTCATGACAAGATATGGGGCCTTCGAGTTCCTGGTGATGCCCTTTGGCTTGACAAACGCCCCAGCTACGTTTTACATGTTAATGAACCTGGTTTTCTACGAATACTTGGATCAGTTTGTCATAGTATCCCTCGATGACATAGTTGTATACAGCACAACCTTAGAGGAACACAAGGTACACTTGAAGCTTGTATTTGACAAGCTGCGGCAGAATCAGTTGTACGTCAAGAAAGAAAAATGTGCCTTCGCACAGACATGCATCAACTTCCTCGAACATGTCATCAGTTGTGGACAGATTGGGATGGATAGCGATAAGATAAAAGCTATCCAAGAGTGGAAAGTCCCTACTTCCGTATCCGATGTGCGATCCTTCTTAGGATTAGCAAACTACTATAGGCGGTTCGTCGAAGGGTTTTCACGACGAGCCACCCCCTTAACGGAGCTCCTGAAGAAAGACCACCCTTGGTCGTGGTCAAATAAATGTCAAATGGCCTTTGAAGATCTGAAGACAACCATGACGAGGGGTCCTGCCTTCGAGTTAGTAGATGTTACAAAGTCATTTGAAATAGAAACAAATGCTTCTGACTTTGCCCTAGGCGATGTCCTTATTCAAGAAGGGCGCCCCATCGCTTATGAAAGTCGAAAGCTCAATGATGCCGAACGGAGATACACTGTCTCCGAAAAGGAAATGCTAGCTTTAGTTCATTGCCTACGAGTCTAG

Protein sequence

MPLAKCLVIIERNSTVIPASIKQPGNLRMISAIQLKRGLAREEPTFMTIPLMEEVTTEETIPDEIKEVLNSYADIMSESLPQTLPPRRGIDHEIELLPEVKPPAKNAYWMAPLELAELRKQLDELLTAGFICPAKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVHNKYPLLIISDLFDQLHGAKYFTKLDIRSGYYQVRIAEGDESKTTFMTRYGAFEFLVMPFGLTNAPATFYMLMNLVFYEYLDQFVIVSLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLYVKKEKCAFAQTCINFLEHVISCGQIGMDSDKIKAIQEWKVPTSVSDVRSFLGLANYYRRFVEGFSRRATPLTELLKKDHPWSWSNKCQMAFEDLKTTMTRGPAFELVDVTKSFEIETNASDFALGDVLIQEGRPIAYESRKLNDAERRYTVSEKEMLALVHCLRV

Homology

[Close]

BLAST of CmoCh09G012390 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 2.0e-69
Identity = 145/417 (34.77%), Postives = 235/417 (56.35%), Query Frame = 0


Query: 39  LAREEPTFMTIPLMEEVTTEETIPDEIKEVLNSYADIMSESLPQTLPPRRGIDHEIELLP 98
           ++  + T   +  +  +  E  +PD  KE  +  A+  +E LP+   P +G++ E+EL  
Sbjct: 352 ISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPK---PIKGLEFEVELTQ 411

Query: 99  E-VKPPAKNAYWMAPLELAELRKQLDELLTAGFICPAKAPYGAPVLFQKKKDGTLRLCID 158
           E  + P +N Y + P ++  +  ++++ L +G I  +KA    PV+F  KK+GTLR+ +D
Sbjct: 412 ENYRLPIRN-YPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVD 471

Query: 159 YRALNKVTVHNKYPLLIISDLFDQLHGAKYFTKLDIRSGYYQVRIAEGDESKTTFMTRYG 218
           Y+ LNK    N YPL +I  L  ++ G+  FTKLD++S Y+ +R+ +GDE K  F    G
Sbjct: 472 YKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRG 531

Query: 219 AFEFLVMPFGLTNAPATFYMLMNLVFYEYLDQFVIVSLDDIVVYSTTLEEHKVHLKLVFD 278
            FE+LVMP+G++ APA F   +N +  E  +  V+  +DDI+++S +  EH  H+K V  
Sbjct: 532 VFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQ 591

Query: 279 KLRQNQLYVKKEKCAFAQTCINFLEHVISCGQIGMDSDKIKAIQEWKVPTSVSDVRSFLG 338
           KL+   L + + KC F Q+ + F+ + IS        + I  + +WK P +  ++R FLG
Sbjct: 592 KLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLG 651

Query: 339 LANYYRRFVEGFSRRATPLTELLKKDHPWSWSNKCQMAFEDLKTTMTRGPAFELVDVTKS 398
             NY R+F+   S+   PL  LLKKD  W W+     A E++K  +   P     D +K 
Sbjct: 652 SVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKK 711

Query: 399 FEIETNASDFALGDVLIQEG-----RPIAYESRKLNDAERRYTVSEKEMLALVHCLR 450
             +ET+ASD A+G VL Q+       P+ Y S K++ A+  Y+VS+KEMLA++  L+
Sbjct: 712 ILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLK 764

[Close]

BLAST of CmoCh09G012390 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 2.0e-69
Identity = 145/417 (34.77%), Postives = 235/417 (56.35%), Query Frame = 0


Query: 39  LAREEPTFMTIPLMEEVTTEETIPDEIKEVLNSYADIMSESLPQTLPPRRGIDHEIELLP 98
           ++  + T   +  +  +  E  +PD  KE  +  A+  +E LP+   P +G++ E+EL  
Sbjct: 352 ISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPK---PIKGLEFEVELTQ 411

Query: 99  E-VKPPAKNAYWMAPLELAELRKQLDELLTAGFICPAKAPYGAPVLFQKKKDGTLRLCID 158
           E  + P +N Y + P ++  +  ++++ L +G I  +KA    PV+F  KK+GTLR+ +D
Sbjct: 412 ENYRLPIRN-YPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVD 471

Query: 159 YRALNKVTVHNKYPLLIISDLFDQLHGAKYFTKLDIRSGYYQVRIAEGDESKTTFMTRYG 218
           Y+ LNK    N YPL +I  L  ++ G+  FTKLD++S Y+ +R+ +GDE K  F    G
Sbjct: 472 YKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRG 531

Query: 219 AFEFLVMPFGLTNAPATFYMLMNLVFYEYLDQFVIVSLDDIVVYSTTLEEHKVHLKLVFD 278
            FE+LVMP+G++ APA F   +N +  E  +  V+  +DDI+++S +  EH  H+K V  
Sbjct: 532 VFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQ 591

Query: 279 KLRQNQLYVKKEKCAFAQTCINFLEHVISCGQIGMDSDKIKAIQEWKVPTSVSDVRSFLG 338
           KL+   L + + KC F Q+ + F+ + IS        + I  + +WK P +  ++R FLG
Sbjct: 592 KLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLG 651

Query: 339 LANYYRRFVEGFSRRATPLTELLKKDHPWSWSNKCQMAFEDLKTTMTRGPAFELVDVTKS 398
             NY R+F+   S+   PL  LLKKD  W W+     A E++K  +   P     D +K 
Sbjct: 652 SVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKK 711

Query: 399 FEIETNASDFALGDVLIQEG-----RPIAYESRKLNDAERRYTVSEKEMLALVHCLR 450
             +ET+ASD A+G VL Q+       P+ Y S K++ A+  Y+VS+KEMLA++  L+
Sbjct: 712 ILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLK 764

[Close]

BLAST of CmoCh09G012390 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 2.0e-69
Identity = 145/417 (34.77%), Postives = 235/417 (56.35%), Query Frame = 0


Query: 39  LAREEPTFMTIPLMEEVTTEETIPDEIKEVLNSYADIMSESLPQTLPPRRGIDHEIELLP 98
           ++  + T   +  +  +  E  +PD  KE  +  A+  +E LP+   P +G++ E+EL  
Sbjct: 352 ISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPK---PIKGLEFEVELTQ 411

Query: 99  E-VKPPAKNAYWMAPLELAELRKQLDELLTAGFICPAKAPYGAPVLFQKKKDGTLRLCID 158
           E  + P +N Y + P ++  +  ++++ L +G I  +KA    PV+F  KK+GTLR+ +D
Sbjct: 412 ENYRLPIRN-YPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVD 471

Query: 159 YRALNKVTVHNKYPLLIISDLFDQLHGAKYFTKLDIRSGYYQVRIAEGDESKTTFMTRYG 218
           Y+ LNK    N YPL +I  L  ++ G+  FTKLD++S Y+ +R+ +GDE K  F    G
Sbjct: 472 YKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRG 531

Query: 219 AFEFLVMPFGLTNAPATFYMLMNLVFYEYLDQFVIVSLDDIVVYSTTLEEHKVHLKLVFD 278
            FE+LVMP+G++ APA F   +N +  E  +  V+  +DDI+++S +  EH  H+K V  
Sbjct: 532 VFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQ 591

Query: 279 KLRQNQLYVKKEKCAFAQTCINFLEHVISCGQIGMDSDKIKAIQEWKVPTSVSDVRSFLG 338
           KL+   L + + KC F Q+ + F+ + IS        + I  + +WK P +  ++R FLG
Sbjct: 592 KLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLG 651

Query: 339 LANYYRRFVEGFSRRATPLTELLKKDHPWSWSNKCQMAFEDLKTTMTRGPAFELVDVTKS 398
             NY R+F+   S+   PL  LLKKD  W W+     A E++K  +   P     D +K 
Sbjct: 652 SVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKK 711

Query: 399 FEIETNASDFALGDVLIQEG-----RPIAYESRKLNDAERRYTVSEKEMLALVHCLR 450
             +ET+ASD A+G VL Q+       P+ Y S K++ A+  Y+VS+KEMLA++  L+
Sbjct: 712 ILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLK 764

[Close]

BLAST of CmoCh09G012390 vs. ExPASy Swiss-Prot
Match: P0CT36 (Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-3 PE=1 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 2.0e-69
Identity = 145/417 (34.77%), Postives = 235/417 (56.35%), Query Frame = 0


Query: 39  LAREEPTFMTIPLMEEVTTEETIPDEIKEVLNSYADIMSESLPQTLPPRRGIDHEIELLP 98
           ++  + T   +  +  +  E  +PD  KE  +  A+  +E LP+   P +G++ E+EL  
Sbjct: 352 ISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPK---PIKGLEFEVELTQ 411

Query: 99  E-VKPPAKNAYWMAPLELAELRKQLDELLTAGFICPAKAPYGAPVLFQKKKDGTLRLCID 158
           E  + P +N Y + P ++  +  ++++ L +G I  +KA    PV+F  KK+GTLR+ +D
Sbjct: 412 ENYRLPIRN-YPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVD 471

Query: 159 YRALNKVTVHNKYPLLIISDLFDQLHGAKYFTKLDIRSGYYQVRIAEGDESKTTFMTRYG 218
           Y+ LNK    N YPL +I  L  ++ G+  FTKLD++S Y+ +R+ +GDE K  F    G
Sbjct: 472 YKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRG 531

Query: 219 AFEFLVMPFGLTNAPATFYMLMNLVFYEYLDQFVIVSLDDIVVYSTTLEEHKVHLKLVFD 278
            FE+LVMP+G++ APA F   +N +  E  +  V+  +DDI+++S +  EH  H+K V  
Sbjct: 532 VFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQ 591

Query: 279 KLRQNQLYVKKEKCAFAQTCINFLEHVISCGQIGMDSDKIKAIQEWKVPTSVSDVRSFLG 338
           KL+   L + + KC F Q+ + F+ + IS        + I  + +WK P +  ++R FLG
Sbjct: 592 KLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLG 651

Query: 339 LANYYRRFVEGFSRRATPLTELLKKDHPWSWSNKCQMAFEDLKTTMTRGPAFELVDVTKS 398
             NY R+F+   S+   PL  LLKKD  W W+     A E++K  +   P     D +K 
Sbjct: 652 SVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKK 711

Query: 399 FEIETNASDFALGDVLIQEG-----RPIAYESRKLNDAERRYTVSEKEMLALVHCLR 450
             +ET+ASD A+G VL Q+       P+ Y S K++ A+  Y+VS+KEMLA++  L+
Sbjct: 712 ILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLK 764

[Close]

BLAST of CmoCh09G012390 vs. ExPASy Swiss-Prot
Match: P0CT37 (Transposon Tf2-4 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-4 PE=3 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 2.0e-69
Identity = 145/417 (34.77%), Postives = 235/417 (56.35%), Query Frame = 0


Query: 39  LAREEPTFMTIPLMEEVTTEETIPDEIKEVLNSYADIMSESLPQTLPPRRGIDHEIELLP 98
           ++  + T   +  +  +  E  +PD  KE  +  A+  +E LP+   P +G++ E+EL  
Sbjct: 352 ISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPK---PIKGLEFEVELTQ 411

Query: 99  E-VKPPAKNAYWMAPLELAELRKQLDELLTAGFICPAKAPYGAPVLFQKKKDGTLRLCID 158
           E  + P +N Y + P ++  +  ++++ L +G I  +KA    PV+F  KK+GTLR+ +D
Sbjct: 412 ENYRLPIRN-YPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVD 471

Query: 159 YRALNKVTVHNKYPLLIISDLFDQLHGAKYFTKLDIRSGYYQVRIAEGDESKTTFMTRYG 218
           Y+ LNK    N YPL +I  L  ++ G+  FTKLD++S Y+ +R+ +GDE K  F    G
Sbjct: 472 YKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRG 531

Query: 219 AFEFLVMPFGLTNAPATFYMLMNLVFYEYLDQFVIVSLDDIVVYSTTLEEHKVHLKLVFD 278
            FE+LVMP+G++ APA F   +N +  E  +  V+  +DDI+++S +  EH  H+K V  
Sbjct: 532 VFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQ 591

Query: 279 KLRQNQLYVKKEKCAFAQTCINFLEHVISCGQIGMDSDKIKAIQEWKVPTSVSDVRSFLG 338
           KL+   L + + KC F Q+ + F+ + IS        + I  + +WK P +  ++R FLG
Sbjct: 592 KLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLG 651

Query: 339 LANYYRRFVEGFSRRATPLTELLKKDHPWSWSNKCQMAFEDLKTTMTRGPAFELVDVTKS 398
             NY R+F+   S+   PL  LLKKD  W W+     A E++K  +   P     D +K 
Sbjct: 652 SVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKK 711

Query: 399 FEIETNASDFALGDVLIQEG-----RPIAYESRKLNDAERRYTVSEKEMLALVHCLR 450
             +ET+ASD A+G VL Q+       P+ Y S K++ A+  Y+VS+KEMLA++  L+
Sbjct: 712 ILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLK 764

[Close]

BLAST of CmoCh09G012390 vs. ExPASy TrEMBL
Match: A0A6J1D906 (Reverse transcriptase OS=Momordica charantia OX=3673 GN=LOC111018360 PE=4 SV=1)

HSP 1 Score: 694.1 bits (1790), Expect = 3.8e-196
Identity = 341/449 (75.95%), Postives = 385/449 (85.75%), Query Frame = 0


Query: 1    MPLAKCLVIIERNSTVIPASIKQPGNLRMISAIQLKRGLAREEPTFMTIPLMEEVTTEET 60
            MPLAKC+++   + TV+  SIKQPG +RMISA+QLK+GL REEPTFM IP++E+      
Sbjct: 554  MPLAKCMIVTSNSPTVVTTSIKQPGGIRMISALQLKKGLNREEPTFMAIPMVEQPVETRD 613

Query: 61   IPDEIKEVLNSYADIMSESLPQTLPPRRGIDHEIELLPEVKPPAKNAYWMAPLELAELRK 120
            +P EI+ V+  Y DIM +SLP+TLPPRRGIDHEIEL+P  KPPAKNAY MAP ELAELRK
Sbjct: 614  VPPEIQVVMKEYVDIMPDSLPKTLPPRRGIDHEIELIPGAKPPAKNAYRMAPPELAELRK 673

Query: 121  QLDELLTAGFICPAKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVHNKYPLLIISDLFD 180
            QLDELL AGFI PAKAP+GAPVLFQKKKDGTLRLCIDYRALNKVTV NKYPL II+DLFD
Sbjct: 674  QLDELLNAGFIRPAKAPFGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIITDLFD 733

Query: 181  QLHGAKYFTKLDIRSGYYQVRIAEGDESKTTFMTRYGAFEFLVMPFGLTNAPATFYMLMN 240
            QLHGAKYFTKLD+RSGYYQVRIAEGDE KTT +TRYGAFEFLVM FGLTNAPATF  +MN
Sbjct: 734  QLHGAKYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMXFGLTNAPATFCTMMN 793

Query: 241  LVFYEYLDQFVIVSLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLYVKKEKCAFAQTCINF 300
             VF+EYLDQFV+V LDDIVVYS TL+EH++HL+LVFDKLRQNQLYVKKEKCAFAQ  I F
Sbjct: 794  QVFHEYLDQFVVVYLDDIVVYSPTLKEHQIHLRLVFDKLRQNQLYVKKEKCAFAQKRIXF 853

Query: 301  LEHVISCGQIGMDSDKIKAIQEWKVPTSVSDVRSFLGLANYYRRFVEGFSRRATPLTELL 360
            L HVI  GQI MD+DK+KAIQEW+VPTSV ++RSFLGLANYYRRF+EGFSRRATP+TELL
Sbjct: 854  LGHVIEQGQISMDTDKVKAIQEWRVPTSVIELRSFLGLANYYRRFIEGFSRRATPMTELL 913

Query: 361  KKDHPWSWSNKCQMAFEDLKTTMTRGPAFELVDVTKSFEIETNASDFALGDVLIQEGRPI 420
            KK   W WS + Q AFEDLK  M +GP   L DVTK FE+ET+ASD+ALG VL+Q+  PI
Sbjct: 914  KKGMTWMWSKESQDAFEDLKAAMMKGPVLGLADVTKPFEVETDASDYALGGVLLQDDHPI 973

Query: 421  AYESRKLNDAERRYTVSEKEMLALVHCLR 450
             YESRKLN+AERRYTVSEKEMLA+VHCLR
Sbjct: 974  XYESRKLNNAERRYTVSEKEMLAVVHCLR 1002

[Close]

BLAST of CmoCh09G012390 vs. ExPASy TrEMBL
Match: A0A6J1IEF9 (uncharacterized protein LOC111474945 OS=Cucurbita maxima OX=3661 GN=LOC111474945 PE=4 SV=1)

HSP 1 Score: 683.7 bits (1763), Expect = 5.1e-193
Identity = 358/450 (79.56%), Postives = 369/450 (82.00%), Query Frame = 0


Query: 1   MPLAKCLVIIERNSTVIPASIKQPGNLRMISAIQLKRGLAREEPTFMTIPLMEEVTTEET 60
           MPLAKCLVI +RN TVIPASIKQP                               TTEET
Sbjct: 507 MPLAKCLVITDRNPTVIPASIKQP-----------------------------VTTTEET 566

Query: 61  IPDEIKEVLNSYADIMSESLPQTLPPRRGIDHEIELLPEVKPPAKNAYWMAPLELAELRK 120
           +P+EI EVLN YADIM ESLPQTLPPRRGIDHEIEL+P VKPPAKNAY MAP ELAELRK
Sbjct: 567 VPNEINEVLNDYADIMPESLPQTLPPRRGIDHEIELIPGVKPPAKNAYRMAPPELAELRK 626

Query: 121 QLDELLTAGFICPAKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVHNKYPLLIISDLFD 180
           QLDELL AGFI PAKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTV NKYPL IISDLFD
Sbjct: 627 QLDELLKAGFIRPAKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIISDLFD 686

Query: 181 QLHGAKYFTKLDIRSGYYQVRIAEGDESKTTFMTRYGAFEFLVMPFGLTNAPATFYMLMN 240
           QLHGAKYFTKLD+RSGYYQVRIAEGDE KTT +TRYGAFEFLVMPFGLTNAPATF  LMN
Sbjct: 687 QLHGAKYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPATFCTLMN 746

Query: 241 LVFYEYLDQFVIVSLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLYVKKEKCAFAQTCINF 300
            VFYEYLDQFVIV LDDIVVYSTTLEEHKVHLKLVFDKLRQNQL                
Sbjct: 747 QVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQL---------------- 806

Query: 301 LEHVISCGQIGMDSDKIKAIQEWKVPTSVSDVRSFLGLANYYRRFVEGFSRRATPLTELL 360
                 CGQI MDSDKIKAIQEWKVPTSVSD+RSFLGLANYYRRFVEGFSRRA PLTELL
Sbjct: 807 ------CGQISMDSDKIKAIQEWKVPTSVSDLRSFLGLANYYRRFVEGFSRRAAPLTELL 866

Query: 361 KKDHPWSWSNKCQMAFEDLKTTMTRGPAFELVDVTKSFEIETNASDFALGDVLIQEGRPI 420
           KKDH WSWS+ CQMAFEDLKTTMTRGP   LVDVTK FEIET+ASDFALG VLIQEG PI
Sbjct: 867 KKDHTWSWSDDCQMAFEDLKTTMTRGPVLGLVDVTKPFEIETDASDFALGGVLIQEGHPI 905

Query: 421 AYESRKLNDAERRYTVSEKEMLALVHCLRV 451
           A+ESRKLNDAERRYTVSEKEMLA+VHCLRV
Sbjct: 927 AFESRKLNDAERRYTVSEKEMLAVVHCLRV 905

[Close]

BLAST of CmoCh09G012390 vs. ExPASy TrEMBL
Match: A0A6J1DK29 (uncharacterized protein LOC111021829 OS=Momordica charantia OX=3673 GN=LOC111021829 PE=4 SV=1)

HSP 1 Score: 673.3 bits (1736), Expect = 6.9e-190
Identity = 336/449 (74.83%), Postives = 381/449 (84.86%), Query Frame = 0


Query: 1   MPLAKCLVIIERNSTVIPASIKQPGNLRMISAIQLKRGLAREEPTFMTIPLMEEVTTEET 60
           MPLAKC+++   + TV+ ASIKQPG +RMISA+QLK+GL REEPTF     M+ V T + 
Sbjct: 554 MPLAKCMIVTSNSPTVVTASIKQPGGIRMISALQLKKGLNREEPTF-----MQPVETRD- 613

Query: 61  IPDEIKEVLNSYADIMSESLPQTLPPRRGIDHEIELLPEVKPPAKNAYWMAPLELAELRK 120
           +P EI+ V+  Y DIM +SLP+TLPPRRGIDHEIEL+P  KPPAKNAY MAP +LAELRK
Sbjct: 614 VPPEIQVVMREYVDIMPDSLPKTLPPRRGIDHEIELIPGAKPPAKNAYRMAPPKLAELRK 673

Query: 121 QLDELLTAGFICPAKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVHNKYPLLIISDLFD 180
           QLDEL   GFI PAKAP+GA VLFQKKKDGTLRLCIDYRALNKVTV NKYPL II+DLFD
Sbjct: 674 QLDELFNTGFIRPAKAPFGASVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIITDLFD 733

Query: 181 QLHGAKYFTKLDIRSGYYQVRIAEGDESKTTFMTRYGAFEFLVMPFGLTNAPATFYMLMN 240
           QLHGAKYFTKLD+RSGYYQVRIAEGDE KTT +TRYGAFEFLVMPFGLTNAPATF  +MN
Sbjct: 734 QLHGAKYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPATFCTMMN 793

Query: 241 LVFYEYLDQFVIVSLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLYVKKEKCAFAQTCINF 300
            VF+EYLDQFV+V LDDIVVYS TL+EH++HL+LVFDKLRQNQLYVKKEKCAFAQ  I F
Sbjct: 794 QVFHEYLDQFVVVYLDDIVVYSPTLKEHQIHLRLVFDKLRQNQLYVKKEKCAFAQKRITF 853

Query: 301 LEHVISCGQIGMDSDKIKAIQEWKVPTSVSDVRSFLGLANYYRRFVEGFSRRATPLTELL 360
           L HVI  GQI MD+DK+K IQEW+VPTSV+++RSFLGLANYYRRF+EGFSRRATP+TELL
Sbjct: 854 LGHVIEQGQISMDTDKVKTIQEWRVPTSVTELRSFLGLANYYRRFIEGFSRRATPMTELL 913

Query: 361 KKDHPWSWSNKCQMAFEDLKTTMTRGPAFELVDVTKSFEIETNASDFALGDVLIQEGRPI 420
            K     WS + Q AFEDLK  M +GP   L DVTK FE+ET+ASD+ALG VL+Q+  PI
Sbjct: 914 XKXMTXMWSKESQDAFEDLKAAMMKGPVLGLADVTKPFEVETDASDYALGGVLLQDXHPI 973

Query: 421 AYESRKLNDAERRYTVSEKEMLALVHCLR 450
           AYESRKLN+AERRYTVSEKEMLA+VHCLR
Sbjct: 974 AYESRKLNNAERRYTVSEKEMLAVVHCLR 996

[Close]

BLAST of CmoCh09G012390 vs. ExPASy TrEMBL
Match: A0A5D3C9P8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00750 PE=4 SV=1)

HSP 1 Score: 666.0 bits (1717), Expect = 1.1e-187
Identity = 327/449 (72.83%), Postives = 379/449 (84.41%), Query Frame = 0


Query: 1   MPLAKCLVIIERNSTVIPASIKQPGNLRMISAIQLKRGLAREEPTFMTIPLMEEVTTEET 60
           MPLAKCLVI     +V+   ++QP  L+MISA+QLK+GL+R+EPTFM IPL     + ET
Sbjct: 535 MPLAKCLVITGPTPSVVQTDLRQPDGLKMISAMQLKKGLSRDEPTFMAIPLNSSENSGET 594

Query: 61  IPDEIKEVLNSYADIMSESLPQTLPPRRGIDHEIELLPEVKPPAKNAYWMAPLELAELRK 120
           +P EI  VL  Y D+M +SLP++LPPRR IDHEIEL+P  KPPAKNAY MAP ELAELRK
Sbjct: 595 VPKEIVRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELRK 654

Query: 121 QLDELLTAGFICPAKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVHNKYPLLIISDLFD 180
           QLDELL AGFI PAKAPYGAPVLFQKKKDG+LRLCIDYRALNK+TV NKYPL II+DLFD
Sbjct: 655 QLDELLNAGFIRPAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFD 714

Query: 181 QLHGAKYFTKLDIRSGYYQVRIAEGDESKTTFMTRYGAFEFLVMPFGLTNAPATFYMLMN 240
           +LHGAKYF+KLD+RSGYYQVRIAEGDE KTT +TRYGAFEFLVMPFGLTNAPATF  LMN
Sbjct: 715 RLHGAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPATFCTLMN 774

Query: 241 LVFYEYLDQFVIVSLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLYVKKEKCAFAQTCINF 300
            VF+EYLD+FV+V LDDIVVYSTT+EEH+ HL+ VF KL++NQLYVK+EKC+FAQ  INF
Sbjct: 775 QVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQERINF 834

Query: 301 LEHVISCGQIGMDSDKIKAIQEWKVPTSVSDVRSFLGLANYYRRFVEGFSRRATPLTELL 360
           L HVI CG+IGM+  KI AI++W +P SVS++RSFLGLANYYRRFVEGFS+RA+PLTELL
Sbjct: 835 LGHVIECGRIGMEEGKIAAIRDWAMPKSVSELRSFLGLANYYRRFVEGFSKRASPLTELL 894

Query: 361 KKDHPWSWSNKCQMAFEDLKTTMTRGPAFELVDVTKSFEIETNASDFALGDVLIQEGRPI 420
           KKD  W+W  +CQ AF+ LK  +  GP   + DVTK FE+ET+ASD+ALG VL+Q G PI
Sbjct: 895 KKDVHWNWDPECQAAFDGLKQALMEGPLLGIADVTKPFEVETDASDYALGGVLLQNGHPI 954

Query: 421 AYESRKLNDAERRYTVSEKEMLALVHCLR 450
           AYESRKLN AERRYTVSEKEMLA+VHCLR
Sbjct: 955 AYESRKLNAAERRYTVSEKEMLAVVHCLR 983

[Close]

BLAST of CmoCh09G012390 vs. ExPASy TrEMBL
Match: A0A5D3C4R1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001990 PE=4 SV=1)

HSP 1 Score: 665.6 bits (1716), Expect = 1.4e-187
Identity = 326/449 (72.61%), Postives = 379/449 (84.41%), Query Frame = 0


Query: 1    MPLAKCLVIIERNSTVIPASIKQPGNLRMISAIQLKRGLAREEPTFMTIPLMEEVTTEET 60
            MPLAKCLVI     +V+   ++QP  L+MISA+QLK+GL+R+EPTFM IPL     + ET
Sbjct: 565  MPLAKCLVITGPTPSVVQTDLRQPDGLKMISAMQLKKGLSRDEPTFMAIPLKSSENSGET 624

Query: 61   IPDEIKEVLNSYADIMSESLPQTLPPRRGIDHEIELLPEVKPPAKNAYWMAPLELAELRK 120
            +P EI  VL  Y D+M +SLP++LPPRR IDHEIEL+P  KPPAKNAY MAP ELAELRK
Sbjct: 625  VPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELRK 684

Query: 121  QLDELLTAGFICPAKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVHNKYPLLIISDLFD 180
            QLDELL AGFI PAKAPYGAPVLFQ+KKDG+LRLCIDYRALNK+TV NKYPL II+DLFD
Sbjct: 685  QLDELLNAGFIRPAKAPYGAPVLFQRKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFD 744

Query: 181  QLHGAKYFTKLDIRSGYYQVRIAEGDESKTTFMTRYGAFEFLVMPFGLTNAPATFYMLMN 240
            +LHGAKYF+KLD+RSGYYQVRIAEGDE KTT +TRYGAFEFLVMPFGLTNAPATF  LMN
Sbjct: 745  RLHGAKYFSKLDLRSGYYQVRIAEGDEPKTTCVTRYGAFEFLVMPFGLTNAPATFCTLMN 804

Query: 241  LVFYEYLDQFVIVSLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLYVKKEKCAFAQTCINF 300
             VF+EYLD+FV+V LDDIVVYSTT+EEH+ HL+ VF KL++NQLYVK+EKC+FAQ  INF
Sbjct: 805  QVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQERINF 864

Query: 301  LEHVISCGQIGMDSDKIKAIQEWKVPTSVSDVRSFLGLANYYRRFVEGFSRRATPLTELL 360
            L HVI CG+IGM+  KI AI++W +P SVS++RSFLGLANYYRRFVEGFS+RA+PLTELL
Sbjct: 865  LGHVIECGRIGMEEGKIAAIRDWAMPKSVSELRSFLGLANYYRRFVEGFSKRASPLTELL 924

Query: 361  KKDHPWSWSNKCQMAFEDLKTTMTRGPAFELVDVTKSFEIETNASDFALGDVLIQEGRPI 420
            KKD  W+W  +CQ AF+ LK  +  GP   + DVTK FE+ET+ASD+ALG VL+Q G PI
Sbjct: 925  KKDVHWNWDPECQTAFDGLKQALMEGPLLGIADVTKPFEVETDASDYALGGVLLQNGHPI 984

Query: 421  AYESRKLNDAERRYTVSEKEMLALVHCLR 450
            AYESRKLN AERRYTVSEKEMLA+VHCLR
Sbjct: 985  AYESRKLNAAERRYTVSEKEMLAVVHCLR 1013

[Close]

BLAST of CmoCh09G012390 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 95.5 bits (236), Expect = 1.2e-19
Identity = 50/130 (38.46%), Postives = 73/130 (56.15%), Query Frame = 0


Query: 271 HLKLVFDKLRQNQLYVKKEKCAFAQTCINFL--EHVISCGQIGMDSDKIKAIQEWKVPTS 330
           HL +V     Q+Q Y  ++KCAF Q  I +L   H+IS   +  D  K++A+  W  P +
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 331 VSDVRSFLGLANYYRRFVEGFSRRATPLTELLKKDHPWSWSNKCQMAFEDLKTTMTRGPA 390
            +++R FLGL  YYRRFV+ + +   PLTELLKK +   W+    +AF+ LK  +T  P 
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKK-NSLKWTEMAALAFKALKGAVTTLPV 122

Query: 391 FELVDVTKSF 399
             L D+   F
Sbjct: 123 LALPDLKLPF 131

The following BLAST results are available for this feature:

BLAST of CmoCh09G012390 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0CT41	2.0e-69	34.77	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	2.0e-69	34.77	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	2.0e-69	34.77	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT36	2.0e-69	34.77	Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT37	2.0e-69	34.77	Transposon Tf2-4 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of CmoCh09G012390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D906	3.8e-196	75.95	Reverse transcriptase OS=Momordica charantia OX=3673 GN=LOC111018360 PE=4 SV=1	[more]
A0A6J1IEF9	5.1e-193	79.56	uncharacterized protein LOC111474945 OS=Cucurbita maxima OX=3661 GN=LOC111474945...	[more]
A0A6J1DK29	6.9e-190	74.83	uncharacterized protein LOC111021829 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A5D3C9P8	1.1e-187	72.83	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold26...	[more]
A0A5D3C4R1	1.4e-187	72.61	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]

BLAST of CmoCh09G012390 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	1.2e-19	38.46	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 314..400 e-value: 5.4E-28 score: 98.8
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 170..305 e-value: 1.1E-81 score: 275.2
IPR041577	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	PFAM	PF17919	RT_RNaseH_2	coord: 368..449 e-value: 1.5E-22 score: 79.4
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 90..230 e-value: 1.1E-81 score: 275.2
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 119..446
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 119..446
None	No IPR available	CDD	cd01647	RT_LTR	coord: 129..305 e-value: 1.54875E-84 score: 255.213
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 146..301 e-value: 3.9E-24 score: 85.4
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 126..305 score: 12.462942
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 68..449

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh09G012390.1	CmoCh09G012390.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding