CmoCh08G011360 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATCCTACTTCAAACTTGAAATGAAGCAAACCAACCACTCTTTTTCTTAGTTCCCTTTTCACTTTTTGCTTTGTTTTCGAGGATTCGAGATGGAAACCGAAGTCAACGATGATGATTTGTTGTTTGCCGAGCTCACGAGGCGGATTTCGCTTCTCATTATGGACGACGACGAGCTTCCGAGCGTTCATACGGTTCGTTTCATCTCCCTGTAAACAATCAGTCTTATGTTTGTTTAATGTTTAAAATGCTTCTAGGGTTAATATGGTAATTGAACGACTTGTTACTTTGAAGTTTTTTTAGGTAAGTATGGTATCTATAGGCTCGATTTTCCGTGTTTAGTCGGGATATAAAGTACACAGCTCAAATACCTTAAAAAAAATTTAGGGACTAAACTTGTCATTAAACATATTTTAAGTTTTTGCAGGATTTGAGTCGGACAATACACCGAGTTCGACCTGGGCAATTGCCATTAATGGTGGATTACGAGAATGGCTTTGTAAGGGAGAGCAAAGGTACTGGAGTTTTCATCCCGACACGGTTGCCATCACCTAAGAGGAAGCATAGAAATGTCGTGGGCTACAGAATCAAGTCGGAAAATAAGAGGCTCAATTCTCAACCGTCCTCGACCTATTATTTTAAGCCCAAAAAGAGTTGA ATCCTACTTCAAACTTGAAATGAAGCAAACCAACCACTCTTTTTCTTAGTTCCCTTTTCACTTTTTGCTTTGTTTTCGAGGATTCGAGATGGAAACCGAAGTCAACGATGATGATTTGTTGTTTGCCGAGCTCACGAGGCGGATTTCGCTTCTCATTATGGACGACGACGAGCTTCCGAGCGTTCATACGGATTTGAGTCGGACAATACACCGAGTTCGACCTGGGCAATTGCCATTAATGGTGGATTACGAGAATGGCTTTGTAAGGGAGAGCAAAGGTACTGGAGTTTTCATCCCGACACGGTTGCCATCACCTAAGAGGAAGCATAGAAATGTCGTGGGCTACAGAATCAAGTCGGAAAATAAGAGGCTCAATTCTCAACCGTCCTCGACCTATTATTTTAAGCCCAAAAAGAGTTGA ATGGAAACCGAAGTCAACGATGATGATTTGTTGTTTGCCGAGCTCACGAGGCGGATTTCGCTTCTCATTATGGACGACGACGAGCTTCCGAGCGTTCATACGGATTTGAGTCGGACAATACACCGAGTTCGACCTGGGCAATTGCCATTAATGGTGGATTACGAGAATGGCTTTGTAAGGGAGAGCAAAGGTACTGGAGTTTTCATCCCGACACGGTTGCCATCACCTAAGAGGAAGCATAGAAATGTCGTGGGCTACAGAATCAAGTCGGAAAATAAGAGGCTCAATTCTCAACCGTCCTCGACCTATTATTTTAAGCCCAAAAAGAGTTGA METEVNDDDLLFAELTRRISLLIMDDDELPSVHTDLSRTIHRVRPGQLPLMVDYENGFVRESKGTGVFIPTRLPSPKRKHRNVVGYRIKSENKRLNSQPSSTYYFKPKKS Homology
BLAST of CmoCh08G011360 vs. ExPASy TrEMBL
Match: A0A6J1EQJ8 (uncharacterized protein LOC111436898 OS=Cucurbita moschata OX=3662 GN=LOC111436898 PE=4 SV=1) HSP 1 Score: 221.5 bits (563), Expect = 1.8e-54 Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0
BLAST of CmoCh08G011360 vs. ExPASy TrEMBL
Match: A0A6J1KEC6 (uncharacterized protein LOC111494227 OS=Cucurbita maxima OX=3661 GN=LOC111494227 PE=4 SV=1) HSP 1 Score: 213.0 bits (541), Expect = 6.3e-52 Identity = 106/110 (96.36%), Postives = 108/110 (98.18%), Query Frame = 0
BLAST of CmoCh08G011360 vs. ExPASy TrEMBL
Match: A0A0A0KGT1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G153490 PE=4 SV=1) HSP 1 Score: 170.6 bits (431), Expect = 3.6e-39 Identity = 85/109 (77.98%), Postives = 93/109 (85.32%), Query Frame = 0
BLAST of CmoCh08G011360 vs. ExPASy TrEMBL
Match: A0A5A7SW60 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold111G00710 PE=4 SV=1) HSP 1 Score: 162.5 bits (410), Expect = 9.7e-37 Identity = 83/108 (76.85%), Postives = 94/108 (87.04%), Query Frame = 0
BLAST of CmoCh08G011360 vs. ExPASy TrEMBL
Match: A0A1S3C8R0 (uncharacterized protein LOC103497931 OS=Cucumis melo OX=3656 GN=LOC103497931 PE=4 SV=1) HSP 1 Score: 162.5 bits (410), Expect = 9.7e-37 Identity = 83/108 (76.85%), Postives = 94/108 (87.04%), Query Frame = 0
BLAST of CmoCh08G011360 vs. NCBI nr
Match: XP_022930457.1 (uncharacterized protein LOC111436898 [Cucurbita moschata]) HSP 1 Score: 221.5 bits (563), Expect = 3.6e-54 Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0
BLAST of CmoCh08G011360 vs. NCBI nr
Match: KAG6593910.1 (hypothetical protein SDJN03_13386, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 219.9 bits (559), Expect = 1.1e-53 Identity = 109/110 (99.09%), Postives = 110/110 (100.00%), Query Frame = 0
BLAST of CmoCh08G011360 vs. NCBI nr
Match: XP_023521928.1 (uncharacterized protein LOC111785772 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 218.0 bits (554), Expect = 4.0e-53 Identity = 108/110 (98.18%), Postives = 109/110 (99.09%), Query Frame = 0
BLAST of CmoCh08G011360 vs. NCBI nr
Match: XP_023515111.1 (uncharacterized protein LOC111779237 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 216.5 bits (550), Expect = 1.2e-52 Identity = 107/110 (97.27%), Postives = 108/110 (98.18%), Query Frame = 0
BLAST of CmoCh08G011360 vs. NCBI nr
Match: KAG7026252.1 (Peroxiredoxin-2F, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 216.1 bits (549), Expect = 1.5e-52 Identity = 107/109 (98.17%), Postives = 108/109 (99.08%), Query Frame = 0
BLAST of CmoCh08G011360 vs. TAIR 10
Match: AT3G06070.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19190.1); Has 33 Blast hits to 33 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 53.5 bits (127), Expect = 1.2e-07 Identity = 35/90 (38.89%), Postives = 52/90 (57.78%), Query Frame = 0
BLAST of CmoCh08G011360 vs. TAIR 10
Match: AT5G19190.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G06070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 48.9 bits (115), Expect = 3.0e-06 Identity = 39/101 (38.61%), Postives = 54/101 (53.47%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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