CmoCh04G006200 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh04G006200
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr04: 3086684 .. 3088339 (-)
RNA-Seq ExpressionCmoCh04G006200
SyntenyCmoCh04G006200
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTCCATGGCTGCTTTCAAGACCTTCATTTTCATCTTCCTCATCTTCACATGCCCTAATTCAGGTGCTTTTTTCACTTCACATGGATGATTTATGATTAGGGTTTCTCTTAATTTTATGCTAATTTCTTGTTTAGATCTGAATTTTTCAATGTTAAAAGGGAAATTAGGGTTTGTGTTCTTTTTTTTTTTTTTTTTTTGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTAGGGGATGCTGATGGCCTGAGGTTGAAGGAAAGTTTGAAGCTACCAAACCCTTGTGGGCAGGTGAGAAAACCCTAATTAGGTTGGAACTTCGAATTTCAAAAACGTTCAAAATATTAACTTTATGAACGTTTAGGGCATGAGATCGACATCTTATCTAGACAACGTTAAGACTTATACGACTCTAAGTTTGTAAGGGAATGATTTAAGACGTCCACATTTAGAAAAATTTTACGTTTGAAGTGTAAGTTTGAGAACCGAGCTAAACTACTATTGAAAAATCCATGAATTTCATTAAACTTGGATAGGGTAAACAAAATTTGAAATCTTAAGCCAAATTGACTCTAGACCCGACACATCCCTTAAAATTTATTCGTGTTTGTATAAACTATAGACCCGATAGCGGAAAACCCTGATACTGATACCGATAGCTCAAATTTAGTGATAAACCCTTGAAAACATGATATATCAACTTTCTAATTAAGTTGGAACTTAATGAACGTTTAGGGCATGAGATCGACATCTTATCCTAGACAACGTTAAGACTCGAAGTGTATAGAAAAACTATGCATTTGAAGTGTAAGTTTAAAAACCCGGATGAACGACCATTGAAAAATCCATGAATTTCATCGATCTCGAATAGGGTAAACAAAATGTGAAATCTTAAGCCAAACCGAGTCTCACCCAAACGTTCACCCAACACAACCCTTAAAATTGTGTTTGTATAAACTATAGACCCGATAGTAGAAAACACTAGTATTGATATCGATAGCTCAAGTTAGTGATAAACCCTCAATAACAAATAGATATTCTTATTACGGGTCAAAGTCACGATCGATATGAACTTTGAAATTGCAGGTGATAATTGAAAAGAAAGGTGTAAGGAAGCTTTTGGGAGCAGAGGAATTGTTAGACTATGCAAGCCCAAGCCATAACCCAAGACATGAGCCAAGGGTTGGGAACCCTGGAGGAAGAGCCTAA

mRNA sequence

ATGGCGTCCATGGCTGCTTTCAAGACCTTCATTTTCATCTTCCTCATCTTCACATGCCCTAATTCAGGGGATGCTGATGGCCTGAGGTTGAAGGAAAGTTTGAAGCTACCAAACCCTTGTGGGCAGGTGATAATTGAAAAGAAAGGTGTAAGGAAGCTTTTGGGAGCAGAGGAATTGTTAGACTATGCAAGCCCAAGCCATAACCCAAGACATGAGCCAAGGGTTGGGAACCCTGGAGGAAGAGCCTAA

Coding sequence (CDS)

ATGGCGTCCATGGCTGCTTTCAAGACCTTCATTTTCATCTTCCTCATCTTCACATGCCCTAATTCAGGGGATGCTGATGGCCTGAGGTTGAAGGAAAGTTTGAAGCTACCAAACCCTTGTGGGCAGGTGATAATTGAAAAGAAAGGTGTAAGGAAGCTTTTGGGAGCAGAGGAATTGTTAGACTATGCAAGCCCAAGCCATAACCCAAGACATGAGCCAAGGGTTGGGAACCCTGGAGGAAGAGCCTAA

Protein sequence

MASMAAFKTFIFIFLIFTCPNSGDADGLRLKESLKLPNPCGQVIIEKKGVRKLLGAEELLDYASPSHNPRHEPRVGNPGGRA
Homology
BLAST of CmoCh04G006200 vs. ExPASy TrEMBL
Match: A0A5D3D203 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003180 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 6.6e-22
Identity = 61/83 (73.49%), Postives = 66/83 (79.52%), Query Frame = 0

Query: 4  MAAF-KTFIFIFL-IFTCPNSGDADGLRLKESLKLPNPCGQVIIEKKG--VRKLLGAEEL 63
          MAAF KTFIFIFL IFT P+SGDA  L LK+ LKL NPCGQ+I+EK     RKLLGAE L
Sbjct: 1  MAAFIKTFIFIFLIIFTFPDSGDAGDLSLKKGLKLSNPCGQMIVEKNNRVTRKLLGAEVL 60

Query: 64 LDYASPSHNPRHEPRVGNPGGRA 83
          LDYASP HN RHEPR G+PGGRA
Sbjct: 61 LDYASPDHNSRHEPRFGSPGGRA 83

BLAST of CmoCh04G006200 vs. ExPASy TrEMBL
Match: A0A0A0KYH7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G055320 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.1e-21
Identity = 61/83 (73.49%), Postives = 64/83 (77.11%), Query Frame = 0

Query: 4  MAAF-KTFIFIFL-IFTCPNSGDADGLRLKESLKLPNPCGQVIIEK--KGVRKLLGAEEL 63
          MAAF KTFIFIFL IF  PNSGDA  L LK+ LKL NPCGQ+I+EK  K  RKLLGAE  
Sbjct: 1  MAAFIKTFIFIFLIIFMFPNSGDAHDLSLKKGLKLSNPCGQLIVEKNNKVTRKLLGAEAF 60

Query: 64 LDYASPSHNPRHEPRVGNPGGRA 83
           DYASP HN RHEPR GNPGGRA
Sbjct: 61 ADYASPDHNTRHEPRFGNPGGRA 83

BLAST of CmoCh04G006200 vs. ExPASy TrEMBL
Match: A0A5A7TNM7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003170 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.1e-06
Identity = 34/60 (56.67%), Postives = 41/60 (68.33%), Query Frame = 0

Query: 28 LRLKESL--KLPNPCGQVIIEKKG--VRKLLGAEE--LLDYASPSHNPRHEPRVGNPGGR 82
          + LKE L  +  NPCGQ+ I +KG  +RK+LG EE  L+DY  PS NP HEPR G PGGR
Sbjct: 1  MSLKEGLNEEHNNPCGQMRIGRKGKVMRKILGNEEGILMDYNEPSANPSHEPRRGTPGGR 60

BLAST of CmoCh04G006200 vs. ExPASy TrEMBL
Match: A0A5J5A8H2 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_007784 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.5e-05
Identity = 32/67 (47.76%), Postives = 45/67 (67.16%), Query Frame = 0

Query: 8  KTFI-FIFLIFTCPNSGDADGLRLKESLKLPNPCGQVIIEKKGVRKLLGAEELLDYASPS 67
          KTFI  I L+F+CP+SG  +G   K+ +KL NP  +VII+ K  RKL+G   ++DY+S  
Sbjct: 6  KTFILIILLLFSCPSSGRPNG--TKDGVKLTNPHNEVIIQMK-ERKLIGIHTMMDYSSAI 65

Query: 68 HNPRHEP 74
           NP H+P
Sbjct: 66 ANPVHDP 69

BLAST of CmoCh04G006200 vs. ExPASy TrEMBL
Match: A0A6A1ULL4 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR0G004811 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.1e-04
Identity = 35/80 (43.75%), Postives = 49/80 (61.25%), Query Frame = 0

Query: 4  MAAFKTFI-FIFLIFTCPNSGDADGLRLKESLKLPNPCGQVIIEKKGVRKLLG-AEELLD 63
          ++  K FI  + L+    +S  ADG R  +S++L  P G+V+I  K  RKLLG  + L D
Sbjct: 7  LSGTKAFIPVLLLLLIWSSSVRADGFR--DSMELTYPHGEVMIRIK-ARKLLGRVDTLSD 66

Query: 64 YASPSHNPRHEPRVGNPGGR 82
          Y  PS NP HEP+ G+PGG+
Sbjct: 67 YQYPSANPTHEPKKGSPGGK 83

BLAST of CmoCh04G006200 vs. NCBI nr
Match: KAG6600409.1 (hypothetical protein SDJN03_05642, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 166.4 bits (420), Expect = 1.0e-37
Identity = 79/82 (96.34%), Postives = 80/82 (97.56%), Query Frame = 0

Query: 1  MASMAAFKTFIFIFLIFTCPNSGDADGLRLKESLKLPNPCGQVIIEKKGVRKLLGAEELL 60
          MASMAAFKTFIFIFL+F CPNSGDADGLRLKE LKLPNPCGQVIIEKKGVRKLLGAEELL
Sbjct: 1  MASMAAFKTFIFIFLVFICPNSGDADGLRLKEGLKLPNPCGQVIIEKKGVRKLLGAEELL 60

Query: 61 DYASPSHNPRHEPRVGNPGGRA 83
          DYASPSHNPRHEPRVGNPGGRA
Sbjct: 61 DYASPSHNPRHEPRVGNPGGRA 82

BLAST of CmoCh04G006200 vs. NCBI nr
Match: KAG6577123.1 (hypothetical protein SDJN03_24697, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 131.3 bits (329), Expect = 3.7e-27
Identity = 65/83 (78.31%), Postives = 69/83 (83.13%), Query Frame = 0

Query: 1  MASMAAFKTFIFIFLIFTCPNSGDADGLRLKESLKLPNPCGQVIIEK-KGVRKLLGAEEL 60
          MASMAAF TF FIFL+FT PNSG ADGL LKE LKLPNPCGQV +EK K  RKLLGAEE 
Sbjct: 1  MASMAAFNTFFFIFLLFTYPNSGVADGLNLKEGLKLPNPCGQVRVEKNKVARKLLGAEEF 60

Query: 61 LDYASPSHNPRHEPRVGNPGGRA 83
           DYASP HN RHEPR+G+PGGRA
Sbjct: 61 SDYASPEHNRRHEPRIGSPGGRA 83

BLAST of CmoCh04G006200 vs. NCBI nr
Match: TYK16509.1 (hypothetical protein E5676_scaffold21G003180 [Cucumis melo var. makuwa])

HSP 1 Score: 112.8 bits (281), Expect = 1.4e-21
Identity = 61/83 (73.49%), Postives = 66/83 (79.52%), Query Frame = 0

Query: 4  MAAF-KTFIFIFL-IFTCPNSGDADGLRLKESLKLPNPCGQVIIEKKG--VRKLLGAEEL 63
          MAAF KTFIFIFL IFT P+SGDA  L LK+ LKL NPCGQ+I+EK     RKLLGAE L
Sbjct: 1  MAAFIKTFIFIFLIIFTFPDSGDAGDLSLKKGLKLSNPCGQMIVEKNNRVTRKLLGAEVL 60

Query: 64 LDYASPSHNPRHEPRVGNPGGRA 83
          LDYASP HN RHEPR G+PGGRA
Sbjct: 61 LDYASPDHNSRHEPRFGSPGGRA 83

BLAST of CmoCh04G006200 vs. NCBI nr
Match: KGN53437.1 (hypothetical protein Csa_015314 [Cucumis sativus])

HSP 1 Score: 112.1 bits (279), Expect = 2.3e-21
Identity = 61/83 (73.49%), Postives = 64/83 (77.11%), Query Frame = 0

Query: 4  MAAF-KTFIFIFL-IFTCPNSGDADGLRLKESLKLPNPCGQVIIEK--KGVRKLLGAEEL 63
          MAAF KTFIFIFL IF  PNSGDA  L LK+ LKL NPCGQ+I+EK  K  RKLLGAE  
Sbjct: 1  MAAFIKTFIFIFLIIFMFPNSGDAHDLSLKKGLKLSNPCGQLIVEKNNKVTRKLLGAEAF 60

Query: 64 LDYASPSHNPRHEPRVGNPGGRA 83
           DYASP HN RHEPR GNPGGRA
Sbjct: 61 ADYASPDHNTRHEPRFGNPGGRA 83

BLAST of CmoCh04G006200 vs. NCBI nr
Match: KAG6600410.1 (hypothetical protein SDJN03_05643, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 69.7 bits (169), Expect = 1.3e-08
Identity = 41/81 (50.62%), Postives = 51/81 (62.96%), Query Frame = 0

Query: 4  MAAFKTFIFIFLIFTCPNSGDADGLRLKESL-KLPNPCGQVIIEKKGVRKLLGAE-ELLD 63
          MA+    IF FLIFT P+SG A G  L+  L + PNP  Q I+    +RK+LG +  L+D
Sbjct: 1  MASMLPIIFTFLIFTSPSSGRAHGPSLQPDLNEKPNPYSQRIV----MRKVLGMDATLMD 60

Query: 64 YASPSHNPRHEPRVGNPGGRA 83
          Y  P  NP HEPR G+PGGRA
Sbjct: 61 YHEPGANPSHEPRRGSPGGRA 77

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3D2036.6e-2273.49Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KYH71.1e-2173.49Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G055320 PE=4 SV=1[more]
A0A5A7TNM75.1e-0656.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5J5A8H21.5e-0547.76Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_007784 PE=4 SV=1[more]
A0A6A1ULL42.1e-0443.75Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR0G004811 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAG6600409.11.0e-3796.34hypothetical protein SDJN03_05642, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6577123.13.7e-2778.31hypothetical protein SDJN03_24697, partial [Cucurbita argyrosperma subsp. sorori... [more]
TYK16509.11.4e-2173.49hypothetical protein E5676_scaffold21G003180 [Cucumis melo var. makuwa][more]
KGN53437.12.3e-2173.49hypothetical protein Csa_015314 [Cucumis sativus][more]
KAG6600410.11.3e-0850.62hypothetical protein SDJN03_05643, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 63..82

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G006200.1CmoCh04G006200.1mRNA