Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TATATTGACAGTGGAGCCTCAACACATGTAACCAACAGCCCAAACTTCTTTCAATCCTCCTCCAGCTACACAAGTAATGACAGAGTTGTTGTTGGTAATGGTACTCCTCTTAGCATATCTCAGTCAGGACACTCAAATCTACATACTAAGAATGGCATTCTGTCCCTATTAAATATACTTTATGTACCTGAAATCATAAAAAATTTAGTCAGTGTATCCAAGTTGACAAATGATAATAATGTTGTGGTTGAATTTCATGCTGCTTTTTGTGTGGTTAAGGACAAGGACTCAGGGGTGGCACTTCTGATCGAACGACTTAAAGATGGACTCTACCTTTTGGACAATGTCAACCAGCTGATAAATAAAGCACCCTCCACATCAGAACTCTCAGTTGCTCATTTGACAAATTGGTCCAACCAGTTTTCCTCACACGCTGCTCTTGCAACCAGTACCACCATCTCCAAACTACTTCTCCATAGGCGATTAGGCCATCCATCCCCTGAAATTTTGTCTACTTATTCTGTGTTAATCAAATATAACCAATCCACTAAGCTACCAAGGGGACCTTATGAACTTGTGGCTTGA
mRNA sequence
TATATTGACAGTGGAGCCTCAACACATGTAACCAACAGCCCAAACTTCTTTCAATCCTCCTCCAGCTACACAAGTAATGACAGAGTTGTTGTTGGTAATGGTACTCCTCTTAGCATATCTCAGTCAGGACACTCAAATCTACATACTAAGAATGGCATTCTGTCCCTATTAAATATACTTTATGTACCTGAAATCATAAAAAATTTAGTCAGTGTATCCAAGTTGACAAATGATAATAATGTTGTGGACAAGGACTCAGGGGTGGCACTTCTGATCGAACGACTTAAAGATGGACTCTACCTTTTGGACAATGTCAACCAGCTGATAAATAAAGCACCCTCCACATCAGAACTCTCAGTTGCTCATTTGACAAATTGGTCCAACCAGTTTTCCTCACACGCTGCTCTTGCAACCAGTACCACCATCTCCAAACTACTTCTCCATAGGCGATTAGGCCATCCATCCCCTGAAATTTTGTCTACTTATTCTGTGTTAATCAAATATAACCAATCCACTAAGCTACCAAGGGGACCTTATGAACTTGTGGCTTGA
Coding sequence (CDS)
TATATTGACAGTGGAGCCTCAACACATGTAACCAACAGCCCAAACTTCTTTCAATCCTCCTCCAGCTACACAAGTAATGACAGAGTTGTTGTTGGTAATGGTACTCCTCTTAGCATATCTCAGTCAGGACACTCAAATCTACATACTAAGAATGGCATTCTGTCCCTATTAAATATACTTTATGTACCTGAAATCATAAAAAATTTAGTCAGTGTATCCAAGTTGACAAATGATAATAATGTTGTGGACAAGGACTCAGGGGTGGCACTTCTGATCGAACGACTTAAAGATGGACTCTACCTTTTGGACAATGTCAACCAGCTGATAAATAAAGCACCCTCCACATCAGAACTCTCAGTTGCTCATTTGACAAATTGGTCCAACCAGTTTTCCTCACACGCTGCTCTTGCAACCAGTACCACCATCTCCAAACTACTTCTCCATAGGCGATTAGGCCATCCATCCCCTGAAATTTTGTCTACTTATTCTGTGTTAATCAAATATAACCAATCCACTAAGCTACCAAGGGGACCTTATGAACTTGTGGCTTGA
Protein sequence
YIDSGASTHVTNSPNFFQSSSSYTSNDRVVVGNGTPLSISQSGHSNLHTKNGILSLLNILYVPEIIKNLVSVSKLTNDNNVVDKDSGVALLIERLKDGLYLLDNVNQLINKAPSTSELSVAHLTNWSNQFSSHAALATSTTISKLLLHRRLGHPSPEILSTYSVLIKYNQSTKLPRGPYELVA
Homology
BLAST of Bhi02G000610 vs. ExPASy Swiss-Prot
Match:
Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)
HSP 1 Score: 81.3 bits (199), Expect = 1.3e-14
Identity = 67/185 (36.22%), Postives = 96/185 (51.89%), Query Frame = 0
Query: 2 IDSGASTHVTNSPNFFQSSSSYTSNDRVVVGNGTPLSISQSGHSNLHTKNGILSLLNILY 61
+DSGA+ H+T+ N YT D V+V +G+ + IS +G ++L TK+ L+L NILY
Sbjct: 333 LDSGATHHITSDFNNLSLHQPYTGGDDVMVADGSTIPISHTGSTSLSTKSRPLNLHNILY 392
Query: 62 VPEIIKNLVSVSKLTNDN-----------NVVDKDSGVALLIERLKDGLYLLDNVNQLIN 121
VP I KNL+SV +L N N V D ++GV LL + KD LY
Sbjct: 393 VPNIHKNLISVYRLCNANGVSVEFFPASFQVKDLNTGVPLLQGKTKDELY---------- 452
Query: 122 KAPSTSELSVAHLTNWSNQFSSHAALATSTTISKLLLHRRLGHPSPEILSTYSVLIKYNQ 176
+ P S V + F+S ++ AT ++ H RLGHP+P IL+ SV+ Y+
Sbjct: 453 EWPIASSQPV-------SLFASPSSKATHSS-----WHARLGHPAPSILN--SVISNYSL 493
BLAST of Bhi02G000610 vs. ExPASy Swiss-Prot
Match:
Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)
HSP 1 Score: 70.9 bits (172), Expect = 1.7e-11
Identity = 57/171 (33.33%), Postives = 86/171 (50.29%), Query Frame = 0
Query: 2 IDSGASTHVTNSPNFFQSSSSYTSNDRVVVGNGTPLSISQSGHSNLHTKNGILSLLNILY 61
+DSGA+ H+T+ N YT D V++ +G+ + I+ +G ++L T + L L +LY
Sbjct: 312 LDSGATHHITSDFNNLSFHQPYTGGDDVMIADGSTIPITHTGSASLPTSSRSLDLNKVLY 371
Query: 62 VPEIIKNLVSVSKLTNDN-----------NVVDKDSGVALLIERLKDGLYLLDNVNQLIN 121
VP I KNL+SV +L N N V D ++GV LL + KD LY
Sbjct: 372 VPNIHKNLISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLLQGKTKDELY---------- 431
Query: 122 KAPSTSELSVAHLTNWSNQFSSHAALATSTTISKLLLHRRLGHPSPEILST 162
+ P S +V + F+S + AT ++ H RLGHPS IL++
Sbjct: 432 EWPIASSQAV-------SMFASPCSKATHSS-----WHSRLGHPSLAILNS 460
BLAST of Bhi02G000610 vs. NCBI nr
Match:
XP_038895842.1 (uncharacterized protein LOC120084010 [Benincasa hispida])
HSP 1 Score: 170.2 bits (430), Expect = 1.6e-38
Identity = 100/170 (58.82%), Postives = 119/170 (70.00%), Query Frame = 0
Query: 1 YIDSGASTHVTNSPNFFQSSSSYTSNDRVVVGNGTPLSISQSGHSNLHTKNGILSLLNIL 60
YI SGASTHVT++P F S ++YT D+V+V NGTPL+ISQ G S L T +G+LSL NIL
Sbjct: 82 YIGSGASTHVTSNPTFLHSPTTYTCTDKVIVDNGTPLNISQYGSSTLLTNSGVLSLFNIL 141
Query: 61 YVPEIIKNLVSVSKLTNDNNVV-----------DKDSGVALLIERLKDGLYLLDNVNQLI 120
YVPEI+K LVSVSKL DNN++ DK+SGVALL +LKDGLY LD V+ LI
Sbjct: 142 YVPEIVKILVSVSKLAKDNNILVEFHVDFCVVKDKESGVALLKGKLKDGLYQLDIVSSLI 201
Query: 121 NKAPSTSELSVAHLTNWSNQFSSHAALATSTTISKLLLHRRLGHPSPEIL 160
N A + S L A LT S+ SS T+ TISKLLLHRRLGHPS +IL
Sbjct: 202 NNALTRSRLPGASLTTQSSLSSSLPVFTTNITISKLLLHRRLGHPSSKIL 251
BLAST of Bhi02G000610 vs. NCBI nr
Match:
RZB67542.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Glycine soja])
HSP 1 Score: 95.9 bits (237), Expect = 3.8e-16
Identity = 71/170 (41.76%), Postives = 90/170 (52.94%), Query Frame = 0
Query: 1 YIDSGASTHVTNSPNFFQSSSSYTSNDRVVVGNGTPLSISQSGHSNLHTKNGILSLLNIL 60
Y DSGAS HVT+ Q S + ++VGNG LSI SG + L+ L+L N+L
Sbjct: 158 YFDSGASNHVTHQNEKLQDLSESNGKNSLLVGNGKRLSILASGSTQLNN----LNLHNVL 217
Query: 61 YVPEIIKNLVSVSKLTNDNN-----------VVDKDSGVALLIERLKDGLYLLDNVNQLI 120
YVPEI KNL+SVSKLT DNN V DK +G ALL +L+DGLY L +V +
Sbjct: 218 YVPEITKNLLSVSKLTADNNALVEFDANCCYVKDKLTGKALLKGKLRDGLYQLSSVKSQV 277
Query: 121 NKAPSTSELSVAHLTNWSNQFSSHAALATSTTISKLLLHRRLGHPSPEIL 160
NK P T +SV NW HR+LGHP+ ++L
Sbjct: 278 NKDPCT-YMSVKE--NW---------------------HRKLGHPNNKVL 299
BLAST of Bhi02G000610 vs. NCBI nr
Match:
PNX78574.1 (retrovirus-related Pol polyprotein from transposon TNT 1-94 [Trifolium pratense])
HSP 1 Score: 92.8 bits (229), Expect = 3.3e-15
Identity = 70/170 (41.18%), Postives = 90/170 (52.94%), Query Frame = 0
Query: 1 YIDSGASTHVTNSPNFFQSSSSYTSNDRVVVGNGTPLSISQSGHSNLHTKNGILSLLNIL 60
Y DSGAS HVT+ + FQ + + + ++VGNG L I SG S L KN L+L ++L
Sbjct: 315 YFDSGASNHVTHQADKFQELTENSGKNSLIVGNGAKLKIDASGSSKL--KN--LNLHDVL 374
Query: 61 YVPEIIKNLVSVSKLTNDNNVV-----------DKDSGVALLIERLKDGLYLLDNVNQLI 120
YVP+I KNL+SVSKLT+DNN++ DK +G LL LKDGLY L N +
Sbjct: 375 YVPQITKNLLSVSKLTSDNNIIVEFDNDCCFVKDKLTGKVLLRGILKDGLYQLSNGSSQT 434
Query: 121 NKAPSTSELSVAHLTNWSNQFSSHAALATSTTISKLLLHRRLGHPSPEIL 160
NK P LSV +W HR+LGHPS +L
Sbjct: 435 NKDPCV-YLSVKE--SW---------------------HRKLGHPSNNVL 456
BLAST of Bhi02G000610 vs. NCBI nr
Match:
KAF8413534.1 (hypothetical protein HHK36_001525 [Tetracentron sinense])
HSP 1 Score: 92.4 bits (228), Expect = 4.3e-15
Identity = 64/167 (38.32%), Postives = 91/167 (54.49%), Query Frame = 0
Query: 3 DSGASTHVTNSPNFFQSSSSYTSNDRVVVGNGTPLSISQSGHSNLHTKNGILSLLNILYV 62
D+GA++H+TN+P S S YT +D+++VGNG LSIS +GH++L T +G L + NIL V
Sbjct: 321 DTGATSHMTNNPGILSSISPYTGSDKIIVGNGNELSISHTGHTSLPTPHGNLKIDNILVV 380
Query: 63 PEIIKNLVSVSKLTNDNNVVDKDSGVALLIERLKDGLYLLDNVN-QLINKAPSTSELSVA 122
P I KNL+SV +LT+D + L E DG + D + +++ K L
Sbjct: 381 PSITKNLLSVGQLTDD---------YSCLFEFTSDGFCIKDQQSGRILTKGTRDGGLYTL 440
Query: 123 HLTNWSNQFSSHAALATSTTISKLLLHRRLGHPSPE-----ILSTYS 164
+ F S TS I H+RLGHP P+ ILST+S
Sbjct: 441 RSDATTKAFYSSRQQKTSEDI----WHQRLGHPQPKVGDQAILSTFS 474
BLAST of Bhi02G000610 vs. NCBI nr
Match:
PNY01489.1 (copia-like polyprotein, partial [Trifolium pratense])
HSP 1 Score: 92.0 bits (227), Expect = 5.6e-15
Identity = 68/170 (40.00%), Postives = 91/170 (53.53%), Query Frame = 0
Query: 1 YIDSGASTHVTNSPNFFQSSSSYTSNDRVVVGNGTPLSISQSGHSNLHTKNGILSLLNIL 60
Y DSGAS HVT+ + FQ + + + ++VGNG L I SG + L+T L+L ++L
Sbjct: 313 YFDSGASNHVTHQTDKFQGFNEHNGKNSLMVGNGEKLKIVASGSTKLNT----LNLHDVL 372
Query: 61 YVPEIIKNLVSVSKLTNDNN-----------VVDKDSGVALLIERLKDGLYLLDNVNQLI 120
YVP+I KNL+SVSKLT DNN V DK +G LL RLKDGLY L +V+
Sbjct: 373 YVPQITKNLLSVSKLTADNNIFVEFDANCCSVKDKLTGQTLLKGRLKDGLYQLSDVSPQS 432
Query: 121 NKAPSTSELSVAHLTNWSNQFSSHAALATSTTISKLLLHRRLGHPSPEIL 160
NK P +SV +W HR+LGHP+ ++L
Sbjct: 433 NKDPCV-YMSVKE--SW---------------------HRKLGHPNNKVL 454
BLAST of Bhi02G000610 vs. ExPASy TrEMBL
Match:
A0A445H1W7 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Glycine soja OX=3848 GN=D0Y65_037750 PE=4 SV=1)
HSP 1 Score: 95.9 bits (237), Expect = 1.9e-16
Identity = 71/170 (41.76%), Postives = 90/170 (52.94%), Query Frame = 0
Query: 1 YIDSGASTHVTNSPNFFQSSSSYTSNDRVVVGNGTPLSISQSGHSNLHTKNGILSLLNIL 60
Y DSGAS HVT+ Q S + ++VGNG LSI SG + L+ L+L N+L
Sbjct: 158 YFDSGASNHVTHQNEKLQDLSESNGKNSLLVGNGKRLSILASGSTQLNN----LNLHNVL 217
Query: 61 YVPEIIKNLVSVSKLTNDNN-----------VVDKDSGVALLIERLKDGLYLLDNVNQLI 120
YVPEI KNL+SVSKLT DNN V DK +G ALL +L+DGLY L +V +
Sbjct: 218 YVPEITKNLLSVSKLTADNNALVEFDANCCYVKDKLTGKALLKGKLRDGLYQLSSVKSQV 277
Query: 121 NKAPSTSELSVAHLTNWSNQFSSHAALATSTTISKLLLHRRLGHPSPEIL 160
NK P T +SV NW HR+LGHP+ ++L
Sbjct: 278 NKDPCT-YMSVKE--NW---------------------HRKLGHPNNKVL 299
BLAST of Bhi02G000610 vs. ExPASy TrEMBL
Match:
A0A2K3LJ49 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Trifolium pratense OX=57577 GN=L195_g034552 PE=4 SV=1)
HSP 1 Score: 92.8 bits (229), Expect = 1.6e-15
Identity = 70/170 (41.18%), Postives = 90/170 (52.94%), Query Frame = 0
Query: 1 YIDSGASTHVTNSPNFFQSSSSYTSNDRVVVGNGTPLSISQSGHSNLHTKNGILSLLNIL 60
Y DSGAS HVT+ + FQ + + + ++VGNG L I SG S L KN L+L ++L
Sbjct: 315 YFDSGASNHVTHQADKFQELTENSGKNSLIVGNGAKLKIDASGSSKL--KN--LNLHDVL 374
Query: 61 YVPEIIKNLVSVSKLTNDNNVV-----------DKDSGVALLIERLKDGLYLLDNVNQLI 120
YVP+I KNL+SVSKLT+DNN++ DK +G LL LKDGLY L N +
Sbjct: 375 YVPQITKNLLSVSKLTSDNNIIVEFDNDCCFVKDKLTGKVLLRGILKDGLYQLSNGSSQT 434
Query: 121 NKAPSTSELSVAHLTNWSNQFSSHAALATSTTISKLLLHRRLGHPSPEIL 160
NK P LSV +W HR+LGHPS +L
Sbjct: 435 NKDPCV-YLSVKE--SW---------------------HRKLGHPSNNVL 456
BLAST of Bhi02G000610 vs. ExPASy TrEMBL
Match:
A0A2K3NIC3 (Copia protein (Gag-int-pol protein) (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g026116 PE=4 SV=1)
HSP 1 Score: 92.0 bits (227), Expect = 2.7e-15
Identity = 68/170 (40.00%), Postives = 93/170 (54.71%), Query Frame = 0
Query: 1 YIDSGASTHVTNSPNFFQSSSSYTSNDRVVVGNGTPLSISQSGHSNLHTKNGILSLLNIL 60
Y DSGAS HVT+ + FQ + + + ++VGNG L I SG + L KN L+L ++L
Sbjct: 38 YFDSGASNHVTHQTDKFQDLTGHNGKNSLMVGNGEKLKIVASGSTKL--KN--LNLYDVL 97
Query: 61 YVPEIIKNLVSVSKLTNDNNVV-----------DKDSGVALLIERLKDGLYLLDNVNQLI 120
YVPEI KNL+SVSKLT DNN++ DK +G ALL +LK+GLY + NV+
Sbjct: 98 YVPEITKNLLSVSKLTADNNIIVEFDADCCSVKDKLTGKALLKGKLKEGLYQVSNVSSQS 157
Query: 121 NKAPSTSELSVAHLTNWSNQFSSHAALATSTTISKLLLHRRLGHPSPEIL 160
NK T +SV +W HR+LGHP+ ++L
Sbjct: 158 NKDACT-YMSVKE--SW---------------------HRKLGHPNNKVL 179
BLAST of Bhi02G000610 vs. ExPASy TrEMBL
Match:
A0A2K3NEN7 (Copia-like polyprotein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g024786 PE=4 SV=1)
HSP 1 Score: 92.0 bits (227), Expect = 2.7e-15
Identity = 68/170 (40.00%), Postives = 91/170 (53.53%), Query Frame = 0
Query: 1 YIDSGASTHVTNSPNFFQSSSSYTSNDRVVVGNGTPLSISQSGHSNLHTKNGILSLLNIL 60
Y DSGAS HVT+ + FQ + + + ++VGNG L I SG + L+T L+L ++L
Sbjct: 313 YFDSGASNHVTHQTDKFQGFNEHNGKNSLMVGNGEKLKIVASGSTKLNT----LNLHDVL 372
Query: 61 YVPEIIKNLVSVSKLTNDNN-----------VVDKDSGVALLIERLKDGLYLLDNVNQLI 120
YVP+I KNL+SVSKLT DNN V DK +G LL RLKDGLY L +V+
Sbjct: 373 YVPQITKNLLSVSKLTADNNIFVEFDANCCSVKDKLTGQTLLKGRLKDGLYQLSDVSPQS 432
Query: 121 NKAPSTSELSVAHLTNWSNQFSSHAALATSTTISKLLLHRRLGHPSPEIL 160
NK P +SV +W HR+LGHP+ ++L
Sbjct: 433 NKDPCV-YMSVKE--SW---------------------HRKLGHPNNKVL 454
BLAST of Bhi02G000610 vs. ExPASy TrEMBL
Match:
A0A438G1F2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_1134 PE=4 SV=1)
HSP 1 Score: 90.5 bits (223), Expect = 7.8e-15
Identity = 65/184 (35.33%), Postives = 94/184 (51.09%), Query Frame = 0
Query: 1 YIDSGASTHVTNSPNFFQSSSSYTSNDRVVVGNGTPLSISQSGHSNLHTKNGILSLLNIL 60
++DSGA+ H++++ + +SY D V+VGNG L I+Q GHS LH L N+L
Sbjct: 48 FLDSGATHHLSHTVANIHNGTSYNGTDSVMVGNGKSLLITQVGHSFLHISAKPFVLHNVL 107
Query: 61 YVPEIIKNLVSVSKLTNDNNVV-----------DKDSGVALLIERLKDGLYLLDNVNQLI 120
+VP++ NL+SVSK DNN + DKD+ V LL +L+ GLY
Sbjct: 108 HVPQLTSNLISVSKFCTDNNTILEFHPFSFFVKDKDTKVTLLQGQLERGLY--------- 167
Query: 121 NKAPSTSELSVAHLTNWSNQFSSHAALATSTTISKLLLHRRLGHPSPEILST--YSVLIK 172
K P++S N S H T T + +L H+R+GHPS IL ++ I
Sbjct: 168 -KFPTSS-------INSPTASSKHQVFLTKTQPTTMLWHQRVGHPSAIILQKIFHTCNIS 214
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
Q94HW2 | 1.3e-14 | 36.22 | Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... | [more] |
Q9ZT94 | 1.7e-11 | 33.33 | Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... | [more] |
Match Name | E-value | Identity | Description | |
XP_038895842.1 | 1.6e-38 | 58.82 | uncharacterized protein LOC120084010 [Benincasa hispida] | [more] |
RZB67542.1 | 3.8e-16 | 41.76 | Retrovirus-related Pol polyprotein from transposon RE1 [Glycine soja] | [more] |
PNX78574.1 | 3.3e-15 | 41.18 | retrovirus-related Pol polyprotein from transposon TNT 1-94 [Trifolium pratense] | [more] |
KAF8413534.1 | 4.3e-15 | 38.32 | hypothetical protein HHK36_001525 [Tetracentron sinense] | [more] |
PNY01489.1 | 5.6e-15 | 40.00 | copia-like polyprotein, partial [Trifolium pratense] | [more] |
Match Name | E-value | Identity | Description | |
A0A445H1W7 | 1.9e-16 | 41.76 | Retrovirus-related Pol polyprotein from transposon RE1 OS=Glycine soja OX=3848 G... | [more] |
A0A2K3LJ49 | 1.6e-15 | 41.18 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Trifolium pratens... | [more] |
A0A2K3NIC3 | 2.7e-15 | 40.00 | Copia protein (Gag-int-pol protein) (Fragment) OS=Trifolium pratense OX=57577 GN... | [more] |
A0A2K3NEN7 | 2.7e-15 | 40.00 | Copia-like polyprotein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g024786... | [more] |
A0A438G1F2 | 7.8e-15 | 35.33 | Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976... | [more] |