Cmc11g0288681 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc11g0288681
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrotransposon protein
Location	CMiso1.1chr11: 3192134 .. 3192772 (-)
RNA-Seq Expression	Cmc11g0288681
Synteny	Cmc11g0288681

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATACAGGAGTCAGATCTTGTGTGTCGGCAAAGCACGCGGATGGATAGGCGAACATTCGCAATTCTATGCCATTTACATAGAAATGTGGCTGGTCTTTCTTCAACTGAAATTGTCGATGTTGAGGAAATGGTAGCAATGTTCTTGCACGTCCCCGCTCATGACGTGAAGAACCGCGTCATCCAACGGGAATTTGTACGGTCCGGTGAGACAATATCTCGACATTTCAACATCGTATTGTTGGCTGTTCTTCGACTGTATGAGGAGTTGATAAAGAGACCTGTTCCGGTAACAAGTAACTGCAATGATCAACGTTGGAAGTGTTTCGAGGTGGGCATCATAGAAGTTCACTATATTTCACCTTTACGTAGATCGCACTTAATCCAACGTGTTTATTTCAACCTGCAGAACTGCCTTGGCGCGTTAGACGAGACGTACATAAAGGTCAACGTCCCCGCAGGAGATCGGCCTACATTCAGAACGCGTGCCACAAACGTTCTGGGGGTTTGTGACACGAAAGGGGATTTCGTTTATGTCCTCGCCGGTTGGAAAGGATCCGCAGCAGACTCGCAGATCCTACGTGATGCGATTTCACAAGAAAATGGACTACAAGTGCCAAAGGGTATATCTTCTTTATAA

mRNA sequence

ATGATACAGGAGTCAGATCTTGTGTGTCGGCAAAGCACGCGGATGGATAGGCGAACATTCGCAATTCTATGCCATTTACATAGAAATGTGGCTGGTCTTTCTTCAACTGAAATTGTCGATGTTGAGGAAATGGTAGCAATGTTCTTGCACGTCCCCGCTCATGACGTGAAGAACCGCGTCATCCAACGGGAATTTGTACGGTCCGGTGAGACAATATCTCGACATTTCAACATCGTATTGTTGGCTGTTCTTCGACTGTATGAGGAGTTGATAAAGAGACCTGTTCCGGTAACAAGTAACTGCAATGATCAACGTTGGAAGTGTTTCGAGGTGGGCATCATAGAAGTTCACTATATTTCACCTTTACGTAGATCGCACTTAATCCAACGTGTTTATTTCAACCTGCAGAACTGCCTTGGCGCGTTAGACGAGACGTACATAAAGGTCAACGTCCCCGCAGGAGATCGGCCTACATTCAGAACGCGTGCCACAAACGTTCTGGGGGTTTGTGACACGAAAGGGGATTTCGTTTATGTCCTCGCCGGTTGGAAAGGATCCGCAGCAGACTCGCAGATCCTACGTGATGCGATTTCACAAGAAAATGGACTACAAGTGCCAAAGGGTATATCTTCTTTATAA

Coding sequence (CDS)

ATGATACAGGAGTCAGATCTTGTGTGTCGGCAAAGCACGCGGATGGATAGGCGAACATTCGCAATTCTATGCCATTTACATAGAAATGTGGCTGGTCTTTCTTCAACTGAAATTGTCGATGTTGAGGAAATGGTAGCAATGTTCTTGCACGTCCCCGCTCATGACGTGAAGAACCGCGTCATCCAACGGGAATTTGTACGGTCCGGTGAGACAATATCTCGACATTTCAACATCGTATTGTTGGCTGTTCTTCGACTGTATGAGGAGTTGATAAAGAGACCTGTTCCGGTAACAAGTAACTGCAATGATCAACGTTGGAAGTGTTTCGAGGTGGGCATCATAGAAGTTCACTATATTTCACCTTTACGTAGATCGCACTTAATCCAACGTGTTTATTTCAACCTGCAGAACTGCCTTGGCGCGTTAGACGAGACGTACATAAAGGTCAACGTCCCCGCAGGAGATCGGCCTACATTCAGAACGCGTGCCACAAACGTTCTGGGGGTTTGTGACACGAAAGGGGATTTCGTTTATGTCCTCGCCGGTTGGAAAGGATCCGCAGCAGACTCGCAGATCCTACGTGATGCGATTTCACAAGAAAATGGACTACAAGTGCCAAAGGGTATATCTTCTTTATAA

Protein sequence

MIQESDLVCRQSTRMDRRTFAILCHLHRNVAGLSSTEIVDVEEMVAMFLHVPAHDVKNRVIQREFVRSGETISRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFEVGIIEVHYISPLRRSHLIQRVYFNLQNCLGALDETYIKVNVPAGDRPTFRTRATNVLGVCDTKGDFVYVLAGWKGSAADSQILRDAISQENGLQVPKGISSL

Homology

[Close]

BLAST of Cmc11g0288681 vs. NCBI nr
Match: KAA0037743.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 337.4 bits (864), Expect = 8.8e-89
Identity = 174/212 (82.08%), Postives = 178/212 (83.96%), Query Frame = 0


Query: 1   MIQESDLVCRQSTRMDRRTFAILCHLHRNVAGLSSTEIVDVEEMVAMFLHVPAHDVKNRV 60
           MI ESDLVCRQSTRMDRRTFAILCHL RNVAGLSSTEIVDVEEMVAMFLHV AHD+KNRV
Sbjct: 26  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDLKNRV 85

Query: 61  IQREFVRSGETISRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFEVGIIEVHYIS 120
           IQREFVRSGET+SRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE          
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE---------- 145

Query: 121 PLRRSHLIQRVYFNLQNCLGALDETYIKVNVPAGDRPTFRTR----ATNVLGVCDTKGDF 180
                           NCLGALD TYIKVNVPAGDRPTFRTR    ATNVLGVCDTKGDF
Sbjct: 146 ----------------NCLGALDRTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDF 205

Query: 181 VYVLAGWKGSAADSQILRDAISQENGLQVPKG 209
           VYVLAGW+GSAADS+ILRDAISQENGLQVPKG
Sbjct: 206 VYVLAGWEGSAADSRILRDAISQENGLQVPKG 211

[Close]

BLAST of Cmc11g0288681 vs. NCBI nr
Match: KAA0036474.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 337.0 bits (863), Expect = 1.1e-88
Identity = 174/212 (82.08%), Postives = 178/212 (83.96%), Query Frame = 0


Query: 1   MIQESDLVCRQSTRMDRRTFAILCHLHRNVAGLSSTEIVDVEEMVAMFLHVPAHDVKNRV 60
           MI ESDLVCRQSTRMDRRTFAILCHL RNVAGLSSTEIVDVEEMVAMFLH+ AHDVKNRV
Sbjct: 26  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHIFAHDVKNRV 85

Query: 61  IQREFVRSGETISRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFEVGIIEVHYIS 120
           IQREFVRSGET+SRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE          
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE---------- 145

Query: 121 PLRRSHLIQRVYFNLQNCLGALDETYIKVNVPAGDRPTFRTR----ATNVLGVCDTKGDF 180
                           NCLGALD TYIKVNVPAGDRPTFRTR    ATNVLGVCDTKGDF
Sbjct: 146 ----------------NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDF 205

Query: 181 VYVLAGWKGSAADSQILRDAISQENGLQVPKG 209
           VYVLAGWKGSAADS+ILRDAIS+ENGLQVPKG
Sbjct: 206 VYVLAGWKGSAADSRILRDAISRENGLQVPKG 211

[Close]

BLAST of Cmc11g0288681 vs. NCBI nr
Match: TYK27061.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 336.3 bits (861), Expect = 2.0e-88
Identity = 174/212 (82.08%), Postives = 178/212 (83.96%), Query Frame = 0


Query: 1   MIQESDLVCRQSTRMDRRTFAILCHLHRNVAGLSSTEIVDVEEMVAMFLHVPAHDVKNRV 60
           MI ESDLVCRQSTRMDRRTFAILCHL RNVAGLSSTEIVDVEEMVAMFLHV AHDVKNRV
Sbjct: 26  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 61  IQREFVRSGETISRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFEVGIIEVHYIS 120
           IQREFVRSGET+SRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE          
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE---------- 145

Query: 121 PLRRSHLIQRVYFNLQNCLGALDETYIKVNVPAGDRPTFRTR----ATNVLGVCDTKGDF 180
                           NCLGALD TYIKVNVPAGDRPTFRTR    ATNVLGVCDTKGDF
Sbjct: 146 ----------------NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDF 205

Query: 181 VYVLAGWKGSAADSQILRDAISQENGLQVPKG 209
           VYVLAGW+GSAADS+ILRDAIS+ENGLQVPKG
Sbjct: 206 VYVLAGWEGSAADSRILRDAISRENGLQVPKG 211

[Close]

BLAST of Cmc11g0288681 vs. NCBI nr
Match: KAA0056561.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 336.3 bits (861), Expect = 2.0e-88
Identity = 174/212 (82.08%), Postives = 178/212 (83.96%), Query Frame = 0


Query: 1   MIQESDLVCRQSTRMDRRTFAILCHLHRNVAGLSSTEIVDVEEMVAMFLHVPAHDVKNRV 60
           MI ESDLVCRQSTRMDRRTFAILCHL RNVAGLSSTEIVDVEEMVAMFLHV AHDVKNRV
Sbjct: 26  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 61  IQREFVRSGETISRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFEVGIIEVHYIS 120
           IQREFVRSGET+SRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE          
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE---------- 145

Query: 121 PLRRSHLIQRVYFNLQNCLGALDETYIKVNVPAGDRPTFRTR----ATNVLGVCDTKGDF 180
                           NCLGALD TYIKVNVPAGDRPTFRTR    ATNVLGVCDTKGDF
Sbjct: 146 ----------------NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDF 205

Query: 181 VYVLAGWKGSAADSQILRDAISQENGLQVPKG 209
           VYVLAGW+GSAADS+ILRDAIS+ENGLQVPKG
Sbjct: 206 VYVLAGWEGSAADSRILRDAISRENGLQVPKG 211

[Close]

BLAST of Cmc11g0288681 vs. NCBI nr
Match: KAA0031556.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0033743.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0036353.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0038064.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0038976.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 336.3 bits (861), Expect = 2.0e-88
Identity = 174/212 (82.08%), Postives = 178/212 (83.96%), Query Frame = 0


Query: 1   MIQESDLVCRQSTRMDRRTFAILCHLHRNVAGLSSTEIVDVEEMVAMFLHVPAHDVKNRV 60
           MI ESDLVCRQSTRMDRRTFAILCHL RNVAGLSSTEIVDVEEMVAMFLHV AHDVKNRV
Sbjct: 26  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 61  IQREFVRSGETISRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFEVGIIEVHYIS 120
           IQREFVRSGET+SRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE          
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE---------- 145

Query: 121 PLRRSHLIQRVYFNLQNCLGALDETYIKVNVPAGDRPTFRTR----ATNVLGVCDTKGDF 180
                           NCLGALD TYIKVNVPAGDRPTFRTR    ATNVLGVCDTKGDF
Sbjct: 146 ----------------NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDF 205

Query: 181 VYVLAGWKGSAADSQILRDAISQENGLQVPKG 209
           VYVLAGW+GSAADS+ILRDAIS+ENGLQVPKG
Sbjct: 206 VYVLAGWEGSAADSRILRDAISRENGLQVPKG 211

[Close]

BLAST of Cmc11g0288681 vs. ExPASy TrEMBL
Match: A0A5A7T441 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold141G00390 PE=3 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 4.3e-89
Identity = 174/212 (82.08%), Postives = 178/212 (83.96%), Query Frame = 0


Query: 1   MIQESDLVCRQSTRMDRRTFAILCHLHRNVAGLSSTEIVDVEEMVAMFLHVPAHDVKNRV 60
           MI ESDLVCRQSTRMDRRTFAILCHL RNVAGLSSTEIVDVEEMVAMFLHV AHD+KNRV
Sbjct: 26  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDLKNRV 85

Query: 61  IQREFVRSGETISRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFEVGIIEVHYIS 120
           IQREFVRSGET+SRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE          
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE---------- 145

Query: 121 PLRRSHLIQRVYFNLQNCLGALDETYIKVNVPAGDRPTFRTR----ATNVLGVCDTKGDF 180
                           NCLGALD TYIKVNVPAGDRPTFRTR    ATNVLGVCDTKGDF
Sbjct: 146 ----------------NCLGALDRTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDF 205

Query: 181 VYVLAGWKGSAADSQILRDAISQENGLQVPKG 209
           VYVLAGW+GSAADS+ILRDAISQENGLQVPKG
Sbjct: 206 VYVLAGWEGSAADSRILRDAISQENGLQVPKG 211

[Close]

BLAST of Cmc11g0288681 vs. ExPASy TrEMBL
Match: A0A5A7SYW1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold147G00430 PE=3 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 5.6e-89
Identity = 174/212 (82.08%), Postives = 178/212 (83.96%), Query Frame = 0


Query: 1   MIQESDLVCRQSTRMDRRTFAILCHLHRNVAGLSSTEIVDVEEMVAMFLHVPAHDVKNRV 60
           MI ESDLVCRQSTRMDRRTFAILCHL RNVAGLSSTEIVDVEEMVAMFLH+ AHDVKNRV
Sbjct: 26  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHIFAHDVKNRV 85

Query: 61  IQREFVRSGETISRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFEVGIIEVHYIS 120
           IQREFVRSGET+SRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE          
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE---------- 145

Query: 121 PLRRSHLIQRVYFNLQNCLGALDETYIKVNVPAGDRPTFRTR----ATNVLGVCDTKGDF 180
                           NCLGALD TYIKVNVPAGDRPTFRTR    ATNVLGVCDTKGDF
Sbjct: 146 ----------------NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDF 205

Query: 181 VYVLAGWKGSAADSQILRDAISQENGLQVPKG 209
           VYVLAGWKGSAADS+ILRDAIS+ENGLQVPKG
Sbjct: 206 VYVLAGWKGSAADSRILRDAISRENGLQVPKG 211

[Close]

BLAST of Cmc11g0288681 vs. ExPASy TrEMBL
Match: A0A5D3D7X8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001080 PE=3 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 9.5e-89
Identity = 174/212 (82.08%), Postives = 178/212 (83.96%), Query Frame = 0


Query: 1   MIQESDLVCRQSTRMDRRTFAILCHLHRNVAGLSSTEIVDVEEMVAMFLHVPAHDVKNRV 60
           MI ESDLVCRQSTRMDRRTFAILCHL RNVAGLSSTEIVDVEEMVAMFLHV AHDVKNRV
Sbjct: 26  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 61  IQREFVRSGETISRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFEVGIIEVHYIS 120
           IQREFVRSGET+SRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE          
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE---------- 145

Query: 121 PLRRSHLIQRVYFNLQNCLGALDETYIKVNVPAGDRPTFRTR----ATNVLGVCDTKGDF 180
                           NCLGALD TYIKVNVPAGDRPTFRTR    ATNVLGVCDTKGDF
Sbjct: 146 ----------------NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDF 205

Query: 181 VYVLAGWKGSAADSQILRDAISQENGLQVPKG 209
           VYVLAGW+GSAADS+ILRDAIS+ENGLQVPKG
Sbjct: 206 VYVLAGWEGSAADSRILRDAISRENGLQVPKG 211

[Close]

BLAST of Cmc11g0288681 vs. ExPASy TrEMBL
Match: A0A5D3DTQ4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold95G00550 PE=3 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 9.5e-89
Identity = 174/212 (82.08%), Postives = 178/212 (83.96%), Query Frame = 0


Query: 1   MIQESDLVCRQSTRMDRRTFAILCHLHRNVAGLSSTEIVDVEEMVAMFLHVPAHDVKNRV 60
           MI ESDLVCRQSTRMDRRTFAILCHL RNVAGLSSTEIVDVEEMVAMFLHV AHDVKNRV
Sbjct: 26  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 61  IQREFVRSGETISRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFEVGIIEVHYIS 120
           IQREFVRSGET+SRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE          
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE---------- 145

Query: 121 PLRRSHLIQRVYFNLQNCLGALDETYIKVNVPAGDRPTFRTR----ATNVLGVCDTKGDF 180
                           NCLGALD TYIKVNVPAGDRPTFRTR    ATNVLGVCDTKGDF
Sbjct: 146 ----------------NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDF 205

Query: 181 VYVLAGWKGSAADSQILRDAISQENGLQVPKG 209
           VYVLAGW+GSAADS+ILRDAIS+ENGLQVPKG
Sbjct: 206 VYVLAGWEGSAADSRILRDAISRENGLQVPKG 211

[Close]

BLAST of Cmc11g0288681 vs. ExPASy TrEMBL
Match: A0A5A7UST8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G00660 PE=3 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 9.5e-89
Identity = 174/212 (82.08%), Postives = 178/212 (83.96%), Query Frame = 0


Query: 1   MIQESDLVCRQSTRMDRRTFAILCHLHRNVAGLSSTEIVDVEEMVAMFLHVPAHDVKNRV 60
           MI ESDLVCRQSTRMDRRTFAILCHL RNVAGLSSTEIVDVEEMVAMFLHV AHDVKNRV
Sbjct: 26  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85

Query: 61  IQREFVRSGETISRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFEVGIIEVHYIS 120
           IQREFVRSGET+SRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE          
Sbjct: 86  IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE---------- 145

Query: 121 PLRRSHLIQRVYFNLQNCLGALDETYIKVNVPAGDRPTFRTR----ATNVLGVCDTKGDF 180
                           NCLGALD TYIKVNVPAGDRPTFRTR    ATNVLGVCDTKGDF
Sbjct: 146 ----------------NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDF 205

Query: 181 VYVLAGWKGSAADSQILRDAISQENGLQVPKG 209
           VYVLAGW+GSAADS+ILRDAIS+ENGLQVPKG
Sbjct: 206 VYVLAGWEGSAADSRILRDAISRENGLQVPKG 211

[Close]

BLAST of Cmc11g0288681 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 103.6 bits (257), Expect = 2.0e-22
Identity = 65/204 (31.86%), Postives = 99/204 (48.53%), Query Frame = 0


Query: 9   CRQSTRMDRRTFAILCHLHRNVAGLSSTEIVDVEEMVAMFLHVPAHDVKNRVIQREFVRS 68
           C ++ RMD+  F  LC L +    L  T  + +E  +A+FL +  H+++ R +Q  F  S
Sbjct: 42  CFENFRMDKPVFYKLCDLLQTRGLLRHTNRIKIEAQLAIFLFIIGHNLRTRAVQELFCYS 101

Query: 69  GETISRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFEVGIIEVHYISPLRRSHLI 128
           GETISRHFN VL AV+ + ++                            +  P   S  +
Sbjct: 102 GETISRHFNNVLNAVIAISKD----------------------------FFQPNSNSDTL 161

Query: 129 QRVYFNLQNCLGALDETYIKVNVPAGDRPTFRT----RATNVLGVCDTKGDFVYVLAGWK 188
           +      ++C+G +D  +I V V   ++  FR        NVL        F YVLAGW+
Sbjct: 162 ENDDPYFKDCVGVVDSFHIPVMVGVDEQGPFRNGNGLLTQNVLAASSFDLRFNYVLAGWE 217

Query: 189 GSAADSQILRDAISQENGLQVPKG 209
           GSA+D Q+L  A+++ N LQVP+G
Sbjct: 222 GSASDQQVLNAALTRRNKLQVPQG 217

[Close]

BLAST of Cmc11g0288681 vs. TAIR 10
Match: AT1G43722.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28730.1); Has 924 Blast hits to 912 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 73.9 bits (180), Expect = 1.7e-13
Identity = 55/209 (26.32%), Postives = 91/209 (43.54%), Query Frame = 0


Query: 2   IQESDLVCRQSTRMDRRTFAILCHLHRNVAGLSSTEIVDVEEMVAMFLHVPAHDVKNRVI 61
           +Q+    C Q  RM    F  LC++ +    L  T  + +EE VAMFL +  H+   R +
Sbjct: 59  LQQDAAACLQLLRMSLPCFTTLCNMLQTNYDLQPTLNISIEESVAMFLRICGHNEVYRDV 118

Query: 62  QREFVRSGETISRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFEVGIIEVHYISP 121
              F R+ ET+ R F  VL A   L  + I+ P          R + + +          
Sbjct: 119 GLRFGRNQETVQRKFREVLTATELLACDYIRTPT---------RQELYRIP--------- 178

Query: 122 LRRSHLIQRVYFNLQNCLGALDETYIKVNVPAGDRPTFRTR----ATNVLGVCDTKGDFV 181
             R  + QR +      +GA+D T++ V V    +  +  R    + N++ +CD K  F 
Sbjct: 179 -ERLQVDQRYWPYFSGFVGAMDGTHVCVKVKPDLQGMYWNRHDNASLNIMAICDLKMLFT 238

Query: 182 YVLAGWKGSAADSQILRDAISQENGLQVP 207
           Y+  G  GS  D+ +L+ A   ++   +P
Sbjct: 239 YIWNGAPGSCYDTAVLQIAQQSDSEFPLP 248

[Close]

BLAST of Cmc11g0288681 vs. TAIR 10
Match: AT5G28950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 448 Blast hits to 446 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 21; Plants - 396; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 68.6 bits (166), Expect = 7.1e-12
Identity = 34/83 (40.96%), Postives = 55/83 (66.27%), Query Frame = 0


Query: 130 RVYFNLQNCLGALDETYIKVNVPAGDRPTFRTR----ATNVLGVCDTKGDFVYVLAGWKG 189
           R+Y   ++C+GA+D+T+I   V     P+FR R    + N+L  C+   +F+YVL+GW+G
Sbjct: 17  RLYPYFKDCVGAIDDTHIFAMVSQKKMPSFRNRKGDISQNMLAACNFDVEFMYVLSGWEG 76

Query: 190 SAADSQILRDAISQ-ENGLQVPK 208
           SA DS++L DA+++  N L VP+
Sbjct: 77  SAHDSKVLNDALTRNSNRLPVPE 99

[Close]

BLAST of Cmc11g0288681 vs. TAIR 10
Match: AT5G28730.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 496 Blast hits to 496 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 23; Plants - 470; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 58.9 bits (141), Expect = 5.6e-09
Identity = 59/205 (28.78%), Postives = 83/205 (40.49%), Query Frame = 0


Query: 2   IQESDLVCRQSTRMDRRTFAILCHLHRNVAGLSSTEIVDVEEMVAMFLHVPAHDVKNRVI 61
           I  +++ C+   RM    F  LC +     GL S+  + ++E VA+FL + A +   R I
Sbjct: 17  IYSNEVSCQTLIRMSSEAFTQLCEILHGKYGLQSSTNISLDESVAIFLIICASNDTQRDI 76

Query: 62  QREFVRSGETISRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFEVGIIEVHYISP 121
              F  + ETI R F+ VL A+ RL  E I RP  V                 E+  IS 
Sbjct: 77  ALRFGHAQETIWRKFHDVLKAMERLAVEYI-RPRKVE----------------ELRAIS- 136

Query: 122 LRRSHLIQRVYFNLQNCLGALDETYIKVNVPAGDRPTFRTRATNVLGVCDTKGDFVYVLA 181
             R     R +  L + LG                      + NVL +CD    F Y   
Sbjct: 137 -NRLQDDTRYWPFLMDLLG--------------------IASFNVLAICDLDMLFTYCFV 182

Query: 182 GWKGSAADSQILRDAISQENGLQVP 207
           G  GS  D+++L  AIS +    VP
Sbjct: 197 GMAGSTHDARVLSAAISDDPLFHVP 182

The following BLAST results are available for this feature:

BLAST of Cmc11g0288681 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0037743.1	8.8e-89	82.08	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0036474.1	1.1e-88	82.08	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK27061.1	2.0e-88	82.08	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0056561.1	2.0e-88	82.08	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0031556.1	2.0e-88	82.08	retrotransposon protein [Cucumis melo var. makuwa] >KAA0033743.1 retrotransposon...	[more]

BLAST of Cmc11g0288681 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc11g0288681 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T441	4.3e-89	82.08	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7SYW1	5.6e-89	82.08	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3D7X8	9.5e-89	82.08	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DTQ4	9.5e-89	82.08	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UST8	9.5e-89	82.08	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Cmc11g0288681 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G41980.1	2.0e-22	31.86	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT1G43722.1	1.7e-13	26.32	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G28950.1	7.1e-12	40.96	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G28730.1	5.6e-09	28.78	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 1..110
None	No IPR available	PANTHER	PTHR22930:SF216	OS11G0577650 PROTEIN	coord: 1..110
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 136..204
None	No IPR available	PANTHER	PTHR22930:SF216	OS11G0577650 PROTEIN	coord: 136..204

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc11g0288681.1	Cmc11g0288681.1	mRNA