Cmc07g0200421.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc07g0200421.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	nuclear transcription factor Y subunit B-1-like
Location	CMiso1.1chr07: 23007820 .. 23008497 (-)
Sequence length	678
RNA-Seq Expression	Cmc07g0200421.1
Synteny	Cmc07g0200421.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCGGTCAGAAACGTAACTTCACGACCACCACCGCCGTCGTGAGCCCCGTTGGAAGCCCTACCTCCGGCAACATCTCCGACAGCTCAACAAAAGAACAAGACAGGTTTCTTCCGATCGCAAACGTGAGCCGAATCATGAAGAAATCTCTTCCGGCTAACGCGAAAATCTCGAAAGATGCTAAAGAAACAGTCCAAGAATGTGTGTCGGAGTTCATCAGCTTCATCACCGGGGAAGCCTCCGACAAGTGTCAAAGGGAAAAACGGAAGACGATCAACGGAGACGATTTGCTGTGGGCTATGACTACTTTAGGGTTCGAGAATTACGTCGGCCCTTTGAAGATTTATCTCAACAAATACAGAGAAACAGAGGAAGAAAAACATTCTTTAGCTAGACAAGAGGATCCTTCTTTGTCTCCGGCAAAATCATCCGCTGAACACATTATTGGAGGGAAATCGGCGAACTCGGTGATGGATTTTCAGAATTTCAATTCTGGGTTTTATTCATTGGGGAATCAAATTCAAAGTCAGGGAAGTCAGAAGAGTTTCAACATAATCGATGGCGTTGGATTTGGGGAAAATTTGAGGGGTTTCAATATAAATGGAGTTCATGAAAATGGAGAAGGGAATCGAGCTCGAGCCATGGCGGCTCATCTTCAACAGAGCTCCGGTTGGTGA

mRNA sequence

ATGAGCGGTCAGAAACGTAACTTCACGACCACCACCGCCGTCGTGAGCCCCGTTGGAAGCCCTACCTCCGGCAACATCTCCGACAGCTCAACAAAAGAACAAGACAGGTTTCTTCCGATCGCAAACGTGAGCCGAATCATGAAGAAATCTCTTCCGGCTAACGCGAAAATCTCGAAAGATGCTAAAGAAACAGTCCAAGAATGTGTGTCGGAGTTCATCAGCTTCATCACCGGGGAAGCCTCCGACAAGTGTCAAAGGGAAAAACGGAAGACGATCAACGGAGACGATTTGCTGTGGGCTATGACTACTTTAGGGTTCGAGAATTACGTCGGCCCTTTGAAGATTTATCTCAACAAATACAGAGAAACAGAGGAAGAAAAACATTCTTTAGCTAGACAAGAGGATCCTTCTTTGTCTCCGGCAAAATCATCCGCTGAACACATTATTGGAGGGAAATCGGCGAACTCGGTGATGGATTTTCAGAATTTCAATTCTGGGTTTTATTCATTGGGGAATCAAATTCAAAGTCAGGGAAGTCAGAAGAGTTTCAACATAATCGATGGCGTTGGATTTGGGGAAAATTTGAGGGGTTTCAATATAAATGGAGTTCATGAAAATGGAGAAGGGAATCGAGCTCGAGCCATGGCGGCTCATCTTCAACAGAGCTCCGGTTGGTGA

Coding sequence (CDS)

ATGAGCGGTCAGAAACGTAACTTCACGACCACCACCGCCGTCGTGAGCCCCGTTGGAAGCCCTACCTCCGGCAACATCTCCGACAGCTCAACAAAAGAACAAGACAGGTTTCTTCCGATCGCAAACGTGAGCCGAATCATGAAGAAATCTCTTCCGGCTAACGCGAAAATCTCGAAAGATGCTAAAGAAACAGTCCAAGAATGTGTGTCGGAGTTCATCAGCTTCATCACCGGGGAAGCCTCCGACAAGTGTCAAAGGGAAAAACGGAAGACGATCAACGGAGACGATTTGCTGTGGGCTATGACTACTTTAGGGTTCGAGAATTACGTCGGCCCTTTGAAGATTTATCTCAACAAATACAGAGAAACAGAGGAAGAAAAACATTCTTTAGCTAGACAAGAGGATCCTTCTTTGTCTCCGGCAAAATCATCCGCTGAACACATTATTGGAGGGAAATCGGCGAACTCGGTGATGGATTTTCAGAATTTCAATTCTGGGTTTTATTCATTGGGGAATCAAATTCAAAGTCAGGGAAGTCAGAAGAGTTTCAACATAATCGATGGCGTTGGATTTGGGGAAAATTTGAGGGGTTTCAATATAAATGGAGTTCATGAAAATGGAGAAGGGAATCGAGCTCGAGCCATGGCGGCTCATCTTCAACAGAGCTCCGGTTGGTGA

Protein sequence

MSGQKRNFTTTTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQEDPSLSPAKSSAEHIIGGKSANSVMDFQNFNSGFYSLGNQIQSQGSQKSFNIIDGVGFGENLRGFNINGVHENGEGNRARAMAAHLQQSSGW

Homology

[Close]

BLAST of Cmc07g0200421.1 vs. NCBI nr
Match: XP_008453748.1 (PREDICTED: nuclear transcription factor Y subunit B-1-like [Cucumis melo] >KAA0044740.1 nuclear transcription factor Y subunit B-1-like [Cucumis melo var. makuwa] >TYK16723.1 nuclear transcription factor Y subunit B-1-like [Cucumis melo var. makuwa])

HSP 1 Score: 440.3 bits (1131), Expect = 1.0e-119
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 0


Query: 1   MSGQKRNFTTTTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKD 60
           MSGQKRNFTTTTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKD
Sbjct: 1   MSGQKRNFTTTTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKD 60

Query: 61  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKY 120
           AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKY
Sbjct: 61  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKY 120

Query: 121 RETEEEKHSLARQEDPSLSPAKSSAEHIIGGKSANSVMDFQNFNSGFYSLGNQIQSQGSQ 180
           RETEEEKHSLARQEDPSLSPAKSSAEHIIGGKSANSVMDFQNFNSGFYSLGNQIQSQGSQ
Sbjct: 121 RETEEEKHSLARQEDPSLSPAKSSAEHIIGGKSANSVMDFQNFNSGFYSLGNQIQSQGSQ 180

Query: 181 KSFNIIDGVGFGENLRGFNINGVHENGEGNRARAMAAHLQQSSGW 226
           KSFNIIDGVGFGENLRGFNINGVHENGEGNRARAMAAHLQQSSGW
Sbjct: 181 KSFNIIDGVGFGENLRGFNINGVHENGEGNRARAMAAHLQQSSGW 225

[Close]

BLAST of Cmc07g0200421.1 vs. NCBI nr
Match: XP_004149164.1 (nuclear transcription factor Y subunit B [Cucumis sativus] >XP_031745819.1 nuclear transcription factor Y subunit B-like [Cucumis sativus])

HSP 1 Score: 429.1 bits (1102), Expect = 2.4e-116
Identity = 218/225 (96.89%), Postives = 222/225 (98.67%), Query Frame = 0


Query: 1   MSGQKRNFTTTTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKD 60
           MSGQKRNF  TTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISK+
Sbjct: 1   MSGQKRNFMATTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKE 60

Query: 61  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKY 120
           AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKY
Sbjct: 61  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKY 120

Query: 121 RETEEEKHSLARQEDPSLSPAKSSAEHIIGGKSANSVMDFQNFNSGFYSLGNQIQSQGSQ 180
           RETEEEKHSLARQEDPSLSP KS+AEHIIGGKSANSVMDFQNFNSGFYSLGNQIQ+QG+Q
Sbjct: 121 RETEEEKHSLARQEDPSLSPPKSAAEHIIGGKSANSVMDFQNFNSGFYSLGNQIQNQGNQ 180

Query: 181 KSFNIIDGVGFGENLRGFNINGVHENGEGNRARAMAAHLQQSSGW 226
           KSFNIIDGVGFGENLRGFNINGVHENGEGNRARAMAAHLQQSSGW
Sbjct: 181 KSFNIIDGVGFGENLRGFNINGVHENGEGNRARAMAAHLQQSSGW 225

[Close]

BLAST of Cmc07g0200421.1 vs. NCBI nr
Match: KAE8637572.1 (hypothetical protein CSA_017849 [Cucumis sativus] >KAE8649163.1 hypothetical protein Csa_014945 [Cucumis sativus])

HSP 1 Score: 424.9 bits (1091), Expect = 4.4e-115
Identity = 217/224 (96.88%), Postives = 221/224 (98.66%), Query Frame = 0


Query: 1   MSGQKRNFTTTTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKD 60
           MSGQKRNF  TTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISK+
Sbjct: 1   MSGQKRNFMATTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKE 60

Query: 61  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKY 120
           AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKY
Sbjct: 61  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKY 120

Query: 121 RETEEEKHSLARQEDPSLSPAKSSAEHIIGGKSANSVMDFQNFNSGFYSLGNQIQSQGSQ 180
           RETEEEKHSLARQEDPSLSP KS+AEHIIGGKSANSVMDFQNFNSGFYSLGNQIQ+QG+Q
Sbjct: 121 RETEEEKHSLARQEDPSLSPPKSAAEHIIGGKSANSVMDFQNFNSGFYSLGNQIQNQGNQ 180

Query: 181 KSFNIIDGVGFGENLRGFNINGVHENGEGNRARAMAAHLQQSSG 225
           KSFNIIDGVGFGENLRGFNINGVHENGEGNRARAMAAHLQQSSG
Sbjct: 181 KSFNIIDGVGFGENLRGFNINGVHENGEGNRARAMAAHLQQSSG 224

[Close]

BLAST of Cmc07g0200421.1 vs. NCBI nr
Match: XP_038898148.1 (nuclear transcription factor Y subunit B-like [Benincasa hispida])

HSP 1 Score: 412.9 bits (1060), Expect = 1.7e-111
Identity = 212/226 (93.81%), Postives = 219/226 (96.90%), Query Frame = 0


Query: 1   MSGQKRNFTTT-TAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISK 60
           MSG KRNFTTT  A VSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISK
Sbjct: 1   MSGHKRNFTTTAAAAVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISK 60

Query: 61  DAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNK 120
           +AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLK+YLNK
Sbjct: 61  EAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKMYLNK 120

Query: 121 YRETEEEKHSLARQEDPSLSPAKSSAEHIIGGKSANSVMDFQNFNSGFYSLGNQIQSQGS 180
           YRETEEEKHSLARQ+DPSLSPAKS+AE II GKSANSVMDFQNFNSGFYSLGNQ Q+QG+
Sbjct: 121 YRETEEEKHSLARQDDPSLSPAKSAAEQIISGKSANSVMDFQNFNSGFYSLGNQNQNQGN 180

Query: 181 QKSFNIIDGVGFGENLRGFNINGVHENGEGNRARAMAAHLQQSSGW 226
           QKSFNIIDGVGFGE+LRGFNINGVHENGEGNRARAMAAHLQQSSGW
Sbjct: 181 QKSFNIIDGVGFGESLRGFNINGVHENGEGNRARAMAAHLQQSSGW 226

[Close]

BLAST of Cmc07g0200421.1 vs. NCBI nr
Match: XP_022136742.1 (nuclear transcription factor Y subunit B-1-like [Momordica charantia])

HSP 1 Score: 373.2 bits (957), Expect = 1.5e-99
Identity = 196/225 (87.11%), Postives = 206/225 (91.56%), Query Frame = 0


Query: 1   MSGQKRNFTTTTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKD 60
           MSG KRN  +T A VSPVGSPTSG+ISDSSTKEQDRFLPIANVSRIMKKSLPANAKISK+
Sbjct: 1   MSGHKRN--STAAAVSPVGSPTSGDISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKE 60

Query: 61  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKY 120
           AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYV PLKIYLNKY
Sbjct: 61  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVAPLKIYLNKY 120

Query: 121 RETEEEKHSLARQEDPSLSPAKSSAEHIIGGKSANSVMDFQNFNSGFYSLGNQIQSQGSQ 180
           RETEEEKHS ARQ+D   +P   SAE IIGGKSA+SVMDFQNFNSGFYSLGN  Q+Q +Q
Sbjct: 121 RETEEEKHSFARQDDQ--APPPGSAEQIIGGKSASSVMDFQNFNSGFYSLGN--QNQTAQ 180

Query: 181 KSFNIIDGVGFGENLRGFNINGVHENGEGNRARAMAAHLQQSSGW 226
           KSFNIIDGVGFGEN RGFN++GVHENGEGNR RAMAAHLQQSSGW
Sbjct: 181 KSFNIIDGVGFGENFRGFNVSGVHENGEGNRGRAMAAHLQQSSGW 219

[Close]

BLAST of Cmc07g0200421.1 vs. ExPASy Swiss-Prot
Match: O23310 (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NFYB3 PE=1 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.3e-45
Identity = 94/109 (86.24%), Postives = 101/109 (92.66%), Query Frame = 0


Query: 28  DSSTKEQDRFLPIANVSRIMKKSLPANAKISKDAKETVQECVSEFISFITGEASDKCQRE 87
           ++ST+EQDRFLPIANVSRIMKK+LPANAKISKDAKETVQECVSEFISFITGEASDKCQRE
Sbjct: 16  NASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQRE 75

Query: 88  KRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLA-RQED 136
           KRKTINGDDLLWAMTTLGFE+YV PLK+YL KYRE E EK + A RQ D
Sbjct: 76  KRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTTAGRQGD 124

[Close]

BLAST of Cmc07g0200421.1 vs. ExPASy Swiss-Prot
Match: Q0J7P4 (Nuclear transcription factor Y subunit B-11 OS=Oryza sativa subsp. japonica OX=39947 GN=HD5 PE=1 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 5.0e-45
Identity = 90/104 (86.54%), Postives = 95/104 (91.35%), Query Frame = 0


Query: 24  GNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKDAKETVQECVSEFISFITGEASDK 83
           G   DS  KEQDRFLPIANVSRIMK+SLPANAKISK++KETVQECVSEFISF+TGEASDK
Sbjct: 49  GGGGDSPAKEQDRFLPIANVSRIMKRSLPANAKISKESKETVQECVSEFISFVTGEASDK 108

Query: 84  CQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEK 128
           CQREKRKTINGDDLLWAMTTLGFE YVGPLK YLN+YRE E EK
Sbjct: 109 CQREKRKTINGDDLLWAMTTLGFEAYVGPLKSYLNRYREAEGEK 152

[Close]

BLAST of Cmc07g0200421.1 vs. ExPASy Swiss-Prot
Match: Q69J40 (Nuclear transcription factor Y subunit B-10 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB10 PE=1 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 9.5e-44
Identity = 86/99 (86.87%), Postives = 95/99 (95.96%), Query Frame = 0


Query: 29  SSTKEQDRFLPIANVSRIMKKSLPANAKISKDAKETVQECVSEFISFITGEASDKCQREK 88
           +S +EQDRFLPIANVSRIMK++LPANAKISKDAKETVQECVSEFISFITGEASDKCQREK
Sbjct: 18  ASAREQDRFLPIANVSRIMKRALPANAKISKDAKETVQECVSEFISFITGEASDKCQREK 77

Query: 89  RKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEK 128
           RKTINGDDLLWAMTTLGFE+Y+ PLK+YL+K+RE E EK
Sbjct: 78  RKTINGDDLLWAMTTLGFEDYIDPLKLYLHKFRELEGEK 116

[Close]

BLAST of Cmc07g0200421.1 vs. ExPASy Swiss-Prot
Match: Q75IZ7 (Nuclear transcription factor Y subunit B-8 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB8 PE=1 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.6e-43
Identity = 88/99 (88.89%), Postives = 94/99 (94.95%), Query Frame = 0


Query: 29  SSTKEQDRFLPIANVSRIMKKSLPANAKISKDAKETVQECVSEFISFITGEASDKCQREK 88
           SS +EQDRFLPIANVSRIMKK+LPANAKISKDAKETVQECVSEFISFITGEASDKCQREK
Sbjct: 20  SSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREK 79

Query: 89  RKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEK 128
           RKTINGDDLLWAMTTLGFE+YV PLK YL+K+RE E E+
Sbjct: 80  RKTINGDDLLWAMTTLGFEDYVDPLKHYLHKFREIEGER 118

[Close]

BLAST of Cmc07g0200421.1 vs. ExPASy Swiss-Prot
Match: Q9SIT9 (Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana OX=3702 GN=NFYB7 PE=1 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 2.1e-43
Identity = 88/117 (75.21%), Postives = 103/117 (88.03%), Query Frame = 0


Query: 19  GSPTS-GNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKDAKETVQECVSEFISFIT 78
           GSP+S  N ++++ KEQDRFLPIANV RIMKK LP N KISKDAKETVQECVSEFISF+T
Sbjct: 21  GSPSSKTNNNNNNNKEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVT 80

Query: 79  GEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQE 135
           GEASDKCQREKRKTINGDD++WA+TTLGFE+YV PLK+YL KYR+TE EK +  +Q+
Sbjct: 81  GEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEKVNSPKQQ 137

[Close]

BLAST of Cmc07g0200421.1 vs. ExPASy TrEMBL
Match: A0A5D3CXU2 (Nuclear transcription factor Y subunit B-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G005600 PE=3 SV=1)

HSP 1 Score: 440.3 bits (1131), Expect = 5.0e-120
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 0


Query: 1   MSGQKRNFTTTTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKD 60
           MSGQKRNFTTTTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKD
Sbjct: 1   MSGQKRNFTTTTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKD 60

Query: 61  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKY 120
           AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKY
Sbjct: 61  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKY 120

Query: 121 RETEEEKHSLARQEDPSLSPAKSSAEHIIGGKSANSVMDFQNFNSGFYSLGNQIQSQGSQ 180
           RETEEEKHSLARQEDPSLSPAKSSAEHIIGGKSANSVMDFQNFNSGFYSLGNQIQSQGSQ
Sbjct: 121 RETEEEKHSLARQEDPSLSPAKSSAEHIIGGKSANSVMDFQNFNSGFYSLGNQIQSQGSQ 180

Query: 181 KSFNIIDGVGFGENLRGFNINGVHENGEGNRARAMAAHLQQSSGW 226
           KSFNIIDGVGFGENLRGFNINGVHENGEGNRARAMAAHLQQSSGW
Sbjct: 181 KSFNIIDGVGFGENLRGFNINGVHENGEGNRARAMAAHLQQSSGW 225

[Close]

BLAST of Cmc07g0200421.1 vs. ExPASy TrEMBL
Match: A0A1S3BY72 (nuclear transcription factor Y subunit B-1-like OS=Cucumis melo OX=3656 GN=LOC103494392 PE=3 SV=1)

HSP 1 Score: 440.3 bits (1131), Expect = 5.0e-120
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 0


Query: 1   MSGQKRNFTTTTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKD 60
           MSGQKRNFTTTTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKD
Sbjct: 1   MSGQKRNFTTTTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKD 60

Query: 61  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKY 120
           AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKY
Sbjct: 61  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKY 120

Query: 121 RETEEEKHSLARQEDPSLSPAKSSAEHIIGGKSANSVMDFQNFNSGFYSLGNQIQSQGSQ 180
           RETEEEKHSLARQEDPSLSPAKSSAEHIIGGKSANSVMDFQNFNSGFYSLGNQIQSQGSQ
Sbjct: 121 RETEEEKHSLARQEDPSLSPAKSSAEHIIGGKSANSVMDFQNFNSGFYSLGNQIQSQGSQ 180

Query: 181 KSFNIIDGVGFGENLRGFNINGVHENGEGNRARAMAAHLQQSSGW 226
           KSFNIIDGVGFGENLRGFNINGVHENGEGNRARAMAAHLQQSSGW
Sbjct: 181 KSFNIIDGVGFGENLRGFNINGVHENGEGNRARAMAAHLQQSSGW 225

[Close]

BLAST of Cmc07g0200421.1 vs. ExPASy TrEMBL
Match: A0A0A0KXV6 (CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G037610 PE=3 SV=1)

HSP 1 Score: 429.1 bits (1102), Expect = 1.1e-116
Identity = 218/225 (96.89%), Postives = 222/225 (98.67%), Query Frame = 0


Query: 1   MSGQKRNFTTTTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKD 60
           MSGQKRNF  TTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISK+
Sbjct: 1   MSGQKRNFMATTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKE 60

Query: 61  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKY 120
           AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKY
Sbjct: 61  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKY 120

Query: 121 RETEEEKHSLARQEDPSLSPAKSSAEHIIGGKSANSVMDFQNFNSGFYSLGNQIQSQGSQ 180
           RETEEEKHSLARQEDPSLSP KS+AEHIIGGKSANSVMDFQNFNSGFYSLGNQIQ+QG+Q
Sbjct: 121 RETEEEKHSLARQEDPSLSPPKSAAEHIIGGKSANSVMDFQNFNSGFYSLGNQIQNQGNQ 180

Query: 181 KSFNIIDGVGFGENLRGFNINGVHENGEGNRARAMAAHLQQSSGW 226
           KSFNIIDGVGFGENLRGFNINGVHENGEGNRARAMAAHLQQSSGW
Sbjct: 181 KSFNIIDGVGFGENLRGFNINGVHENGEGNRARAMAAHLQQSSGW 225

[Close]

BLAST of Cmc07g0200421.1 vs. ExPASy TrEMBL
Match: A0A6J1C6A6 (nuclear transcription factor Y subunit B-1-like OS=Momordica charantia OX=3673 GN=LOC111008372 PE=3 SV=1)

HSP 1 Score: 373.2 bits (957), Expect = 7.4e-100
Identity = 196/225 (87.11%), Postives = 206/225 (91.56%), Query Frame = 0


Query: 1   MSGQKRNFTTTTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKD 60
           MSG KRN  +T A VSPVGSPTSG+ISDSSTKEQDRFLPIANVSRIMKKSLPANAKISK+
Sbjct: 1   MSGHKRN--STAAAVSPVGSPTSGDISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKE 60

Query: 61  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKY 120
           AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYV PLKIYLNKY
Sbjct: 61  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVAPLKIYLNKY 120

Query: 121 RETEEEKHSLARQEDPSLSPAKSSAEHIIGGKSANSVMDFQNFNSGFYSLGNQIQSQGSQ 180
           RETEEEKHS ARQ+D   +P   SAE IIGGKSA+SVMDFQNFNSGFYSLGN  Q+Q +Q
Sbjct: 121 RETEEEKHSFARQDDQ--APPPGSAEQIIGGKSASSVMDFQNFNSGFYSLGN--QNQTAQ 180

Query: 181 KSFNIIDGVGFGENLRGFNINGVHENGEGNRARAMAAHLQQSSGW 226
           KSFNIIDGVGFGEN RGFN++GVHENGEGNR RAMAAHLQQSSGW
Sbjct: 181 KSFNIIDGVGFGENFRGFNVSGVHENGEGNRGRAMAAHLQQSSGW 219

[Close]

BLAST of Cmc07g0200421.1 vs. ExPASy TrEMBL
Match: A0A6J1IZK6 (nuclear transcription factor Y subunit B-1-like OS=Cucurbita maxima OX=3661 GN=LOC111481354 PE=3 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 1.5e-95
Identity = 195/234 (83.33%), Postives = 204/234 (87.18%), Query Frame = 0


Query: 1   MSGQKRNFTTTTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKD 60
           M+G KRN TT T + SPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLP NAKISK+
Sbjct: 1   MNGHKRNPTTAT-ISSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPVNAKISKE 60

Query: 61  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKY 120
           AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYV  LK YLNKY
Sbjct: 61  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVSTLKTYLNKY 120

Query: 121 RETEEEKHSLARQEDPSLSPAKS-----SAEHIIGGKSANSVMDFQNFNSGFYSLG---- 180
           RETEEEKHSLARQ+D S SPAKS     SAE IIGGKSANSVMDFQN NSGFYSLG    
Sbjct: 121 RETEEEKHSLARQDDHSPSPAKSTAAVCSAEPIIGGKSANSVMDFQNLNSGFYSLGAHNH 180

Query: 181 NQIQSQGSQKSFNIIDGVGFGENLRGFNINGVHENGEGNRARAMAAHLQQSSGW 226
           N     G+QKS++IIDGVGFGENLRGFN++ VHEN EGNR RAMAAHLQQSSGW
Sbjct: 181 NHNHHPGNQKSYHIIDGVGFGENLRGFNLSAVHEN-EGNRGRAMAAHLQQSSGW 232

[Close]

BLAST of Cmc07g0200421.1 vs. TAIR 10
Match: AT4G14540.1 (nuclear factor Y, subunit B3 )

HSP 1 Score: 184.5 bits (467), Expect = 9.4e-47
Identity = 94/109 (86.24%), Postives = 101/109 (92.66%), Query Frame = 0


Query: 28  DSSTKEQDRFLPIANVSRIMKKSLPANAKISKDAKETVQECVSEFISFITGEASDKCQRE 87
           ++ST+EQDRFLPIANVSRIMKK+LPANAKISKDAKETVQECVSEFISFITGEASDKCQRE
Sbjct: 16  NASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQRE 75

Query: 88  KRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLA-RQED 136
           KRKTINGDDLLWAMTTLGFE+YV PLK+YL KYRE E EK + A RQ D
Sbjct: 76  KRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTTAGRQGD 124

[Close]

BLAST of Cmc07g0200421.1 vs. TAIR 10
Match: AT2G13570.1 (nuclear factor Y, subunit B7 )

HSP 1 Score: 177.2 bits (448), Expect = 1.5e-44
Identity = 88/117 (75.21%), Postives = 103/117 (88.03%), Query Frame = 0


Query: 19  GSPTS-GNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKDAKETVQECVSEFISFIT 78
           GSP+S  N ++++ KEQDRFLPIANV RIMKK LP N KISKDAKETVQECVSEFISF+T
Sbjct: 21  GSPSSKTNNNNNNNKEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVT 80

Query: 79  GEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQE 135
           GEASDKCQREKRKTINGDD++WA+TTLGFE+YV PLK+YL KYR+TE EK +  +Q+
Sbjct: 81  GEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEKVNSPKQQ 137

[Close]

BLAST of Cmc07g0200421.1 vs. TAIR 10
Match: AT5G47640.1 (nuclear factor Y, subunit B2 )

HSP 1 Score: 176.8 bits (447), Expect = 2.0e-44
Identity = 94/149 (63.09%), Postives = 107/149 (71.81%), Query Frame = 0


Query: 27  SDSSTKEQDRFLPIANVSRIMKKSLPANAKISKDAKETVQECVSEFISFITGEASDKCQR 86
           S  S +EQDRFLPIANVSRIMKK+LPANAKISKDAKET+QECVSEFISF+TGEASDKCQ+
Sbjct: 21  SSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQK 80

Query: 87  EKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQEDPSLSPAKSSAE 146
           EKRKTINGDDLLWAMTTLGFE+YV PLK+YL ++RE E E+  L R +            
Sbjct: 81  EKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGERTGLGRPQ------------ 140

Query: 147 HIIGGKSANSVMDFQNFNSGFYSLGNQIQ 176
              GG+      D      GFY  G  +Q
Sbjct: 141 --TGGEVGEHQRDAVGDGGGFYGGGGGMQ 155

[Close]

BLAST of Cmc07g0200421.1 vs. TAIR 10
Match: AT2G37060.1 (nuclear factor Y, subunit B8 )

HSP 1 Score: 165.6 bits (418), Expect = 4.5e-41
Identity = 80/116 (68.97%), Postives = 95/116 (81.90%), Query Frame = 0


Query: 32  KEQDRFLPIANVSRIMKKSLPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKT 91
           +EQDRFLPIAN+SRIMK+ LPAN KI+KDAKE VQECVSEFISF+T EASDKCQREKRKT
Sbjct: 29  REQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQECVSEFISFVTSEASDKCQREKRKT 88

Query: 92  INGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQEDPSLSPAKSSAEH 148
           INGDDLLWAM TLGFE+Y+ PLK+YL +YRE E +    A+  DP+      S+++
Sbjct: 89  INGDDLLWAMATLGFEDYMEPLKVYLMRYREMEGDTKGSAKGGDPNAKKDGQSSQN 144

[Close]

BLAST of Cmc07g0200421.1 vs. TAIR 10
Match: AT2G37060.2 (nuclear factor Y, subunit B8 )

HSP 1 Score: 165.6 bits (418), Expect = 4.5e-41
Identity = 80/116 (68.97%), Postives = 95/116 (81.90%), Query Frame = 0


Query: 32  KEQDRFLPIANVSRIMKKSLPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKT 91
           +EQDRFLPIAN+SRIMK+ LPAN KI+KDAKE VQECVSEFISF+T EASDKCQREKRKT
Sbjct: 29  REQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQECVSEFISFVTSEASDKCQREKRKT 88

Query: 92  INGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQEDPSLSPAKSSAEH 148
           INGDDLLWAM TLGFE+Y+ PLK+YL +YRE E +    A+  DP+      S+++
Sbjct: 89  INGDDLLWAMATLGFEDYMEPLKVYLMRYREMEGDTKGSAKGGDPNAKKDGQSSQN 144

The following BLAST results are available for this feature:

BLAST of Cmc07g0200421.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008453748.1	1.0e-119	100.00	PREDICTED: nuclear transcription factor Y subunit B-1-like [Cucumis melo] >KAA00...	[more]
XP_004149164.1	2.4e-116	96.89	nuclear transcription factor Y subunit B [Cucumis sativus] >XP_031745819.1 nucle...	[more]
KAE8637572.1	4.4e-115	96.88	hypothetical protein CSA_017849 [Cucumis sativus] >KAE8649163.1 hypothetical pro...	[more]
XP_038898148.1	1.7e-111	93.81	nuclear transcription factor Y subunit B-like [Benincasa hispida]	[more]
XP_022136742.1	1.5e-99	87.11	nuclear transcription factor Y subunit B-1-like [Momordica charantia]	[more]

BLAST of Cmc07g0200421.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23310	1.3e-45	86.24	Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q0J7P4	5.0e-45	86.54	Nuclear transcription factor Y subunit B-11 OS=Oryza sativa subsp. japonica OX=3...	[more]
Q69J40	9.5e-44	86.87	Nuclear transcription factor Y subunit B-10 OS=Oryza sativa subsp. japonica OX=3...	[more]
Q75IZ7	1.6e-43	88.89	Nuclear transcription factor Y subunit B-8 OS=Oryza sativa subsp. japonica OX=39...	[more]
Q9SIT9	2.1e-43	75.21	Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]

BLAST of Cmc07g0200421.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CXU2	5.0e-120	100.00	Nuclear transcription factor Y subunit B-1-like OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S3BY72	5.0e-120	100.00	nuclear transcription factor Y subunit B-1-like OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0KXV6	1.1e-116	96.89	CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G0376...	[more]
A0A6J1C6A6	7.4e-100	87.11	nuclear transcription factor Y subunit B-1-like OS=Momordica charantia OX=3673 G...	[more]
A0A6J1IZK6	1.5e-95	83.33	nuclear transcription factor Y subunit B-1-like OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of Cmc07g0200421.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G14540.1	9.4e-47	86.24	nuclear factor Y, subunit B3	[more]
AT2G13570.1	1.5e-44	75.21	nuclear factor Y, subunit B7	[more]
AT5G47640.1	2.0e-44	63.09	nuclear factor Y, subunit B2	[more]
AT2G37060.1	4.5e-41	68.97	nuclear factor Y, subunit B8	[more]
AT2G37060.2	4.5e-41	68.97	nuclear factor Y, subunit B8	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 113..133
None	No IPR available	PRINTS	PR00615	CCAATSUBUNTA	coord: 103..121 score: 41.63 coord: 84..102 score: 38.52 coord: 65..83 score: 50.24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..146
None	No IPR available	PANTHER	PTHR11064:SF98	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-11	coord: 20..184
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 37..101 e-value: 3.7E-27 score: 94.4
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 24..149 e-value: 3.4E-47 score: 161.8
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 34..136
IPR027113	Transcription factor NFYB/HAP3	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 20..184
IPR003956	Transcription factor, NFYB/HAP3, conserved site	PROSITE	PS00685	NFYB_HAP3	coord: 68..84

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc07g0200421	Cmc07g0200421	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc07g0200421.1-exon	Cmc07g0200421.1-exon-CMiso1.1chr07:23007820..23008497	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc07g0200421.1-cds	Cmc07g0200421.1-cds-CMiso1.1chr07:23007820..23008497	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc07g0200421.1	Cmc07g0200421.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016602	CCAAT-binding factor complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding