Cmc07g0199561 (gene) Melon (Charmono) v1.1

Overview
NameCmc07g0199561
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionN-(5'-phosphoribosyl)anthranilate isomerase
LocationCMiso1.1chr07: 22459348 .. 22459719 (+)
RNA-Seq ExpressionCmc07g0199561
SyntenyCmc07g0199561
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCTTTGGGGGTGGAAGAATGCTTTGATCTTTTCCAGGTCCGTCTTCAACCACAAATGCTGTTTTTAGACCCCATCCTGTGTGGACTTCAAGATGACAATGCATGAACCAGACTCCTGTAAGTTCATTATGAAAATGATATGAGATATTTATATATATAGTTTCCATAAGTCATATTTCAATTTTGTTCCTTTTTTAAAGTCAATAATATCAATATCCACCTGGGTTATCAGCTCTAAATCGGATGGCAGTCCATCCTCCAGTTGGAACTCCGACTGTATTTCTCTCAACGGGATCAACCAAGTTGTATTTTGCGGGATCTTTGGCTGGGTTGAAGTTCCCGATCCCCGTTCCAACAACAAAGAAGTTGTAG

mRNA sequence

TCCTTTGGGGGTGGAAGAATGCTTTGATCTTTTCCAGGTCCGTCTTCAACCACAAATGCTGTTTTTAGACCCCATCCTGTGTGGACTTCAAGATGACAATGCATGAACCAGACTCCTCTCTAAATCGGATGGCAGTCCATCCTCCAGTTGGAACTCCGACTGTATTTCTCTCAACGGGATCAACCAAGTTGTATTTTGCGGGATCTTTGGCTGGGTTGAAGTTCCCGATCCCCGTTCCAACAACAAAGAAGTTGTAG

Coding sequence (CDS)

ATGACAATGCATGAACCAGACTCCTCTCTAAATCGGATGGCAGTCCATCCTCCAGTTGGAACTCCGACTGTATTTCTCTCAACGGGATCAACCAAGTTGTATTTTGCGGGATCTTTGGCTGGGTTGAAGTTCCCGATCCCCGTTCCAACAACAAAGAAGTTGTAG

Protein sequence

MTMHEPDSSLNRMAVHPPVGTPTVFLSTGSTKLYFAGSLAGLKFPIPVPTTKKL
Homology
BLAST of Cmc07g0199561 vs. NCBI nr
Match: GER47235.1 (recombinase activating protein 1 [Striga asiatica])

HSP 1 Score: 70.5 bits (171), Expect = 5.1e-09
Identity = 34/47 (72.34%), Postives = 36/47 (76.60%), Query Frame = 0

Query: 8   SSLNRMAVHPPVGTPTVFLSTGSTKLYFAGSLAGLKFPIPVPTTKKL 55
           S+ NRMA HPP GTPTVFLSTGST+L   GS  G KFP P PTTKKL
Sbjct: 83  SAKNRMATHPPAGTPTVFLSTGSTRLKLFGSSLGSKFPNPCPTTKKL 129

BLAST of Cmc07g0199561 vs. NCBI nr
Match: GER43514.1 (N-(5'-phosphoribosyl)anthranilate isomerase [Striga asiatica])

HSP 1 Score: 68.2 bits (165), Expect = 2.5e-08
Identity = 33/47 (70.21%), Postives = 35/47 (74.47%), Query Frame = 0

Query: 8   SSLNRMAVHPPVGTPTVFLSTGSTKLYFAGSLAGLKFPIPVPTTKKL 55
           S+ NRMA HPP GTPTVFLSTGST+L   GS  G K P P PTTKKL
Sbjct: 113 SAKNRMATHPPAGTPTVFLSTGSTRLKLFGSSLGSKLPNPCPTTKKL 159

BLAST of Cmc07g0199561 vs. NCBI nr
Match: GFZ10976.1 (laccase 17 [Actinidia rufa])

HSP 1 Score: 63.9 bits (154), Expect = 4.8e-07
Identity = 31/47 (65.96%), Postives = 35/47 (74.47%), Query Frame = 0

Query: 8  SSLNRMAVHPPVGTPTVFLSTGSTKLYFAGSLAGLKFPIPVPTTKKL 55
          S+  R A HPP GTPTVFLS GST+L  AGSL G KFP P PTTK++
Sbjct: 15 SARKRNATHPPEGTPTVFLSIGSTRLNLAGSLFGSKFPNPSPTTKEI 61

BLAST of Cmc07g0199561 vs. NCBI nr
Match: RDY04399.1 (SWR1 complex subunit 6, partial [Mucuna pruriens])

HSP 1 Score: 59.7 bits (143), Expect = 9.0e-06
Identity = 28/46 (60.87%), Postives = 32/46 (69.57%), Query Frame = 0

Query: 8   SSLNRMAVHPPVGTPTVFLSTGSTKLYFAGSLAGLKFPIPVPTTKK 54
           S+  RMA HPP G P VFL+ GST+L   GS+ GLK P P PTTKK
Sbjct: 221 SATKRMATHPPGGVPMVFLTGGSTRLNLRGSVIGLKLPTPEPTTKK 266

BLAST of Cmc07g0199561 vs. ExPASy TrEMBL
Match: A0A5A7QP95 (Recombinase activating protein 1 OS=Striga asiatica OX=4170 GN=STAS_24325 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.5e-09
Identity = 34/47 (72.34%), Postives = 36/47 (76.60%), Query Frame = 0

Query: 8   SSLNRMAVHPPVGTPTVFLSTGSTKLYFAGSLAGLKFPIPVPTTKKL 55
           S+ NRMA HPP GTPTVFLSTGST+L   GS  G KFP P PTTKKL
Sbjct: 83  SAKNRMATHPPAGTPTVFLSTGSTRLKLFGSSLGSKFPNPCPTTKKL 129

BLAST of Cmc07g0199561 vs. ExPASy TrEMBL
Match: A0A5A7QES0 (N-(5'-phosphoribosyl)anthranilate isomerase OS=Striga asiatica OX=4170 GN=STAS_20374 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.2e-08
Identity = 33/47 (70.21%), Postives = 35/47 (74.47%), Query Frame = 0

Query: 8   SSLNRMAVHPPVGTPTVFLSTGSTKLYFAGSLAGLKFPIPVPTTKKL 55
           S+ NRMA HPP GTPTVFLSTGST+L   GS  G K P P PTTKKL
Sbjct: 113 SAKNRMATHPPAGTPTVFLSTGSTRLKLFGSSLGSKLPNPCPTTKKL 159

BLAST of Cmc07g0199561 vs. ExPASy TrEMBL
Match: A0A7J0GJJ4 (Laccase 17 OS=Actinidia rufa OX=165716 GN=Acr_22g0003740 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.3e-07
Identity = 31/47 (65.96%), Postives = 35/47 (74.47%), Query Frame = 0

Query: 8  SSLNRMAVHPPVGTPTVFLSTGSTKLYFAGSLAGLKFPIPVPTTKKL 55
          S+  R A HPP GTPTVFLS GST+L  AGSL G KFP P PTTK++
Sbjct: 15 SARKRNATHPPEGTPTVFLSIGSTRLNLAGSLFGSKFPNPSPTTKEI 61

BLAST of Cmc07g0199561 vs. ExPASy TrEMBL
Match: A0A371HNP4 (SWR1 complex subunit 6 (Fragment) OS=Mucuna pruriens OX=157652 GN=SWC6 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 4.4e-06
Identity = 28/46 (60.87%), Postives = 32/46 (69.57%), Query Frame = 0

Query: 8   SSLNRMAVHPPVGTPTVFLSTGSTKLYFAGSLAGLKFPIPVPTTKK 54
           S+  RMA HPP G P VFL+ GST+L   GS+ GLK P P PTTKK
Sbjct: 221 SATKRMATHPPGGVPMVFLTGGSTRLNLRGSVIGLKLPTPEPTTKK 266

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
GER47235.15.1e-0972.34recombinase activating protein 1 [Striga asiatica][more]
GER43514.12.5e-0870.21N-(5'-phosphoribosyl)anthranilate isomerase [Striga asiatica][more]
GFZ10976.14.8e-0765.96laccase 17 [Actinidia rufa][more]
RDY04399.19.0e-0660.87SWR1 complex subunit 6, partial [Mucuna pruriens][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7QP952.5e-0972.34Recombinase activating protein 1 OS=Striga asiatica OX=4170 GN=STAS_24325 PE=4 S... [more]
A0A5A7QES01.2e-0870.21N-(5'-phosphoribosyl)anthranilate isomerase OS=Striga asiatica OX=4170 GN=STAS_2... [more]
A0A7J0GJJ42.3e-0765.96Laccase 17 OS=Actinidia rufa OX=165716 GN=Acr_22g0003740 PE=4 SV=1[more]
A0A371HNP44.4e-0660.87SWR1 complex subunit 6 (Fragment) OS=Mucuna pruriens OX=157652 GN=SWC6 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc07g0199561.1Cmc07g0199561.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003824 catalytic activity
molecular_function GO:0046872 metal ion binding