Cmc07g0195521 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc07g0195521
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr07: 18826103 .. 18827421 (-)
RNA-Seq Expression	Cmc07g0195521
Synteny	Cmc07g0195521

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCGCTCTATGAGAGTTTTGATCAGTTGCCAGATTCTTTTTGAGGATATGCTTTAGAGACAACTATCTATATTTTGAACAACGTTCTCTCTAAAAGTGTTTCTGAAACACCTTATGAGCTATGGAAAGGGCATAAAGAAAGTTTATGTCACTTTAGGATTTGGAGATGTCCAGTACACGTGTTGGTGCAAAACCCTAAAAAATTGGAACATCGTTCAAAATGCCTTTTTGTAGGTTATTCAAAAGAATCAAGAGGTGGTTTATTTAATGATTCTCAAGAAAATAAAGTATTTGTATCGACAAATGCTACGTTCTTAGAGGAAGACCACATAAGAAATCATCAAACTCGCAGTAAACTAGTATTAGAAGAAATTTCCAAGAATACTACAAATAGACCTAGTTCATCTACTAAAGTAGTAGATAAAACTAGGAATATTGGTCAAACACATCCTTCTCAAGAGTTGGGAGAACCTCGTCGTAGTGGGAGGGTTGTACGACAGCCTAATCGCTATTTTGGTTTAAGTGAAGCTCAAATCATTATACCTGATGATGCCATAAAGGATCCATTAACCTATAAACAAGCAATGAATGATGTGGACAGTGATCAATTGATCAAAGCCATGGACCTCGAAATGGAATCTATGTATTCAAATTCAGTCTGGACTCTAGTAGATCAACCAAGTGAGGTAAGACCTATTGGTTGTAAATGGATCTATAAGAGAAAACGAGACCAAGCTGGTAAAGTACAGACTTTCAAAGCTCGACTAGTGGCAAAAGGTTACACACAAAAGGAGGAAATAGATTATGAAGAAACTTTCTCTCCTGTTGTCATGATAAAGTCAATACAAATACTCTTGTCCATTGCCACTTTTTATGATTATGAAATTTGGCAGATGGATGTCAAGATAGCCTTTTTGAATGGTAATCTTGAAGAGAGTATTTATATGGTCCAACCAAAGGGATATATTCAAAAGGATCAAGAACAAAAAGTTTGTAAGCTTCAAAAATCTATTTATGGATTAAAACAAGCTTCTAGATCCTGGAATATAAGGTTTGATATTGCGATCAAATCTTATAATTTTGAACAGAATGTTGATGAACCTTGTGTCTACAAAAGGATCATCAATTCTACTGTAGCATTCTTAGTTCTGTATGTAGATGACATTCTACTAATTGGGAATGATATAGGTCATCTAACTGATATTAAGGAATGGTTAGCTACGCAATTCCAAATAAAAGATTTGGGAAATGCACAATATGTTCTTGGTATCCAAATAGTTCGGAACCGAAAGAACAAAACTCTAACCATGTTTTAA

mRNA sequence

ATGACAACTATCTATATTTTGAACAACGTTCTCTCTAAAAGTGTTTCTGAAACACCTTATGAGCTATGGAAAGGGCATAAAGAAAGTTTATGTCACTTTAGGATTTGGAGATGTCCAGTACACGTGTTGGTGCAAAACCCTAAAAAATTGGAACATCGTTCAAAATGCCTTTTTGTAGGTTATTCAAAAGAATCAAGAGGTGGTTTATTTAATGATTCTCAAGAAAATAAAGTATTTGTATCGACAAATGCTACGTTCTTAGAGGAAGACCACATAAGAAATCATCAAACTCGCAGTAAACTAGTATTAGAAGAAATTTCCAAGAATACTACAAATAGACCTAGTTCATCTACTAAAGTAGTAGATAAAACTAGGAATATTGGTCAAACACATCCTTCTCAAGAGTTGGGAGAACCTCGTCGTAGTGGGAGGGTTGTACGACAGCCTAATCGCTATTTTGGTTTAAGTGAAGCTCAAATCATTATACCTGATGATGCCATAAAGGATCCATTAACCTATAAACAAGCAATGAATGATGTGGACAGTGATCAATTGATCAAAGCCATGGACCTCGAAATGGAATCTATGTATTCAAATTCAGTCTGGACTCTAGTAGATCAACCAAGTGAGGTAAGACCTATTGGTTGTAAATGGATCTATAAGAGAAAACGAGACCAAGCTGGTAAAGTACAGACTTTCAAAGCTCGACTAGTGGCAAAAGGTTACACACAAAAGGAGGAAATAGATTATGAAGAAACTTTCTCTCCTGTTGTCATGATAAAGTCAATACAAATACTCTTGTCCATTGCCACTTTTTATGATTATGAAATTTGGCAGATGGATGTCAAGATAGCCTTTTTGAATGGTAATCTTGAAGAGAGTATTTATATGGTCCAACCAAAGGGATATATTCAAAAGGATCAAGAACAAAAAGTTTGTAAGCTTCAAAAATCTATTTATGGATTAAAACAAGCTTCTAGATCCTGGAATATAAGGTTTGATATTGCGATCAAATCTTATAATTTTGAACAGAATGTTGATGAACCTTGTGTCTACAAAAGGATCATCAATTCTACTGTAGCATTCTTAGTTCTGTATGTAGATGACATTCTACTAATTGGGAATGATATAGGTCATCTAACTGATATTAAGGAATGGTTAGCTACGCAATTCCAAATAAAAGATTTGGGAAATGCACAATATGTTCTTGGTATCCAAATAGTTCGGAACCGAAAGAACAAAACTCTAACCATGTTTTAA

Coding sequence (CDS)

ATGACAACTATCTATATTTTGAACAACGTTCTCTCTAAAAGTGTTTCTGAAACACCTTATGAGCTATGGAAAGGGCATAAAGAAAGTTTATGTCACTTTAGGATTTGGAGATGTCCAGTACACGTGTTGGTGCAAAACCCTAAAAAATTGGAACATCGTTCAAAATGCCTTTTTGTAGGTTATTCAAAAGAATCAAGAGGTGGTTTATTTAATGATTCTCAAGAAAATAAAGTATTTGTATCGACAAATGCTACGTTCTTAGAGGAAGACCACATAAGAAATCATCAAACTCGCAGTAAACTAGTATTAGAAGAAATTTCCAAGAATACTACAAATAGACCTAGTTCATCTACTAAAGTAGTAGATAAAACTAGGAATATTGGTCAAACACATCCTTCTCAAGAGTTGGGAGAACCTCGTCGTAGTGGGAGGGTTGTACGACAGCCTAATCGCTATTTTGGTTTAAGTGAAGCTCAAATCATTATACCTGATGATGCCATAAAGGATCCATTAACCTATAAACAAGCAATGAATGATGTGGACAGTGATCAATTGATCAAAGCCATGGACCTCGAAATGGAATCTATGTATTCAAATTCAGTCTGGACTCTAGTAGATCAACCAAGTGAGGTAAGACCTATTGGTTGTAAATGGATCTATAAGAGAAAACGAGACCAAGCTGGTAAAGTACAGACTTTCAAAGCTCGACTAGTGGCAAAAGGTTACACACAAAAGGAGGAAATAGATTATGAAGAAACTTTCTCTCCTGTTGTCATGATAAAGTCAATACAAATACTCTTGTCCATTGCCACTTTTTATGATTATGAAATTTGGCAGATGGATGTCAAGATAGCCTTTTTGAATGGTAATCTTGAAGAGAGTATTTATATGGTCCAACCAAAGGGATATATTCAAAAGGATCAAGAACAAAAAGTTTGTAAGCTTCAAAAATCTATTTATGGATTAAAACAAGCTTCTAGATCCTGGAATATAAGGTTTGATATTGCGATCAAATCTTATAATTTTGAACAGAATGTTGATGAACCTTGTGTCTACAAAAGGATCATCAATTCTACTGTAGCATTCTTAGTTCTGTATGTAGATGACATTCTACTAATTGGGAATGATATAGGTCATCTAACTGATATTAAGGAATGGTTAGCTACGCAATTCCAAATAAAAGATTTGGGAAATGCACAATATGTTCTTGGTATCCAAATAGTTCGGAACCGAAAGAACAAAACTCTAACCATGTTTTAA

Protein sequence

MTTIYILNNVLSKSVSETPYELWKGHKESLCHFRIWRCPVHVLVQNPKKLEHRSKCLFVGYSKESRGGLFNDSQENKVFVSTNATFLEEDHIRNHQTRSKLVLEEISKNTTNRPSSSTKVVDKTRNIGQTHPSQELGEPRRSGRVVRQPNRYFGLSEAQIIIPDDAIKDPLTYKQAMNDVDSDQLIKAMDLEMESMYSNSVWTLVDQPSEVRPIGCKWIYKRKRDQAGKVQTFKARLVAKGYTQKEEIDYEETFSPVVMIKSIQILLSIATFYDYEIWQMDVKIAFLNGNLEESIYMVQPKGYIQKDQEQKVCKLQKSIYGLKQASRSWNIRFDIAIKSYNFEQNVDEPCVYKRIINSTVAFLVLYVDDILLIGNDIGHLTDIKEWLATQFQIKDLGNAQYVLGIQIVRNRKNKTLTMF

Homology

[Close]

BLAST of Cmc07g0195521 vs. NCBI nr
Match: TYK03644.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 714.9 bits (1844), Expect = 4.0e-202
Identity = 363/418 (86.84%), Postives = 380/418 (90.91%), Query Frame = 0


Query: 2   TTIYILNNVLSKSVSETPYELWKGHKESLCHFRIWRCPVHVLVQNPKKLEHRSK-CLFVG 61
           TTIYILNNV SKSVSETPYELWKG K SL HFRIW CP HV VQNPKKLE RSK CLFVG
Sbjct: 61  TTIYILNNVPSKSVSETPYELWKGRKGSLRHFRIWGCPAHVFVQNPKKLERRSKLCLFVG 120

Query: 62  YSKESRGGLFNDSQENKVFVSTNATFLEEDHIRNHQTRSKLVLEEISKNTTNRPSSSTKV 121
           Y KES+GGLF D QENKVFVSTNATFLEEDHIRNHQTRSKLVLEEISKNTT+RPSS TKV
Sbjct: 121 YPKESKGGLFYDPQENKVFVSTNATFLEEDHIRNHQTRSKLVLEEISKNTTDRPSSFTKV 180

Query: 122 VDKTRNIGQTHPSQELGEPRRSGRVVRQPNRYFGLSEAQIIIPDDAIKDPLTYKQAMNDV 181
           VDKTRNIGQTH  QELG+PRRSGRVVRQ +RY GLSEAQIIIPDD I+DPLTYK AMNDV
Sbjct: 181 VDKTRNIGQTHHFQELGKPRRSGRVVRQSDRYLGLSEAQIIIPDDGIEDPLTYKHAMNDV 240

Query: 182 DSDQLIKAMDLEMESMYSNSVWTLVDQPSEVRPIGCKWIYKRKRDQAGKVQTFKARLVAK 241
           D DQ IKAMDLEMESMYSNSVWTLVDQP++V+PIGCKWIYKRKRDQAGKVQTFKARLVAK
Sbjct: 241 DRDQWIKAMDLEMESMYSNSVWTLVDQPNDVKPIGCKWIYKRKRDQAGKVQTFKARLVAK 300

Query: 242 GYTQKEEIDYEETFSPVVMIKSIQILLSIATFYDYEIWQMDVKIAFLNGNLEESIYMVQP 301
           GYTQKE IDYEE FS   MIKSI+ILLSIATFYDYEIWQMDVK  FLN NLEESIYMVQP
Sbjct: 301 GYTQKEGIDYEEVFS-FAMIKSIRILLSIATFYDYEIWQMDVKTTFLNANLEESIYMVQP 360

Query: 302 KGYIQKDQEQKVCKLQKSIYGLKQASRSWNIRFDIAIKSYNFEQNVDEPCVYKRIINSTV 361
           + +IQK QEQK+CKLQKSIYGLKQASRS NIRFD AIKSY  EQNVDEPCVYKRI+NSTV
Sbjct: 361 ERFIQKGQEQKICKLQKSIYGLKQASRSCNIRFDTAIKSYGLEQNVDEPCVYKRIMNSTV 420

Query: 362 AFLVLYVDDILLIGNDIGHLTDIKEWLATQFQIKDLGNAQYVLGIQIVRNRKNKTLTM 419
           AFLVLYVDDILLIGND+GHL DIK+WLA QFQ+KDLGNAQYVLG+QIVRNRKNKTL M
Sbjct: 421 AFLVLYVDDILLIGNDVGHLADIKKWLAMQFQMKDLGNAQYVLGVQIVRNRKNKTLAM 477

[Close]

BLAST of Cmc07g0195521 vs. NCBI nr
Match: ADJ18449.1 (gag/pol protein, partial [Bryonia dioica])

HSP 1 Score: 688.0 bits (1774), Expect = 5.2e-194
Identity = 343/418 (82.06%), Postives = 372/418 (89.00%), Query Frame = 0


Query: 2    TTIYILNNVLSKSVSETPYELWKGHKESLCHFRIWRCPVHVLVQNPKKLEHRSK-CLFVG 61
            T I+ILNNV SKSV ETPYELWKG K SL +FRIW CP HVLVQNPKKLE RSK CLFVG
Sbjct: 636  TAIHILNNVPSKSVLETPYELWKGRKSSLRYFRIWGCPAHVLVQNPKKLEPRSKLCLFVG 695

Query: 62   YSKESRGGLFNDSQENKVFVSTNATFLEEDHIRNHQTRSKLVLEEISKNTTNRPSSSTKV 121
            Y KESRGGLF   QENKVFVSTNATFLEEDH RNHQ RSK+VL+E+ KN T++PSSSTKV
Sbjct: 696  YPKESRGGLFYHPQENKVFVSTNATFLEEDHXRNHQPRSKIVLKEMFKNATDKPSSSTKV 755

Query: 122  VDKTRNIGQTHPSQELGEPRRSGRVVRQPNRYFGLSEAQIIIPDDAIKDPLTYKQAMNDV 181
            VDK     Q+H SQEL  PRRSGRVV QPNRY GL E QIIIPDD ++DPLTYKQAMNDV
Sbjct: 756  VDKANISDQSHTSQELRVPRRSGRVVHQPNRYLGLVETQIIIPDDGVEDPLTYKQAMNDV 815

Query: 182  DSDQLIKAMDLEMESMYSNSVWTLVDQPSEVRPIGCKWIYKRKRDQAGKVQTFKARLVAK 241
            D DQ IKAM+LEMESMY NSVWTLVD PS+V+PIGCKWIYKRKRDQAGKVQTFKARLVAK
Sbjct: 816  DRDQWIKAMNLEMESMYFNSVWTLVDLPSDVKPIGCKWIYKRKRDQAGKVQTFKARLVAK 875

Query: 242  GYTQKEEIDYEETFSPVVMIKSIQILLSIATFYDYEIWQMDVKIAFLNGNLEESIYMVQP 301
            GYTQKE +DYEETFSPV M+KSI+ILLSIATFY+YEIWQMDVK AFLNGNLEESIYMVQP
Sbjct: 876  GYTQKEGVDYEETFSPVAMLKSIRILLSIATFYNYEIWQMDVKTAFLNGNLEESIYMVQP 935

Query: 302  KGYIQKDQEQKVCKLQKSIYGLKQASRSWNIRFDIAIKSYNFEQNVDEPCVYKRIINSTV 361
            +G+I +DQEQKVCKLQKSIYGLKQASRSWNIRFD AIKSY FEQNVDEPCVYK+I+NS V
Sbjct: 936  EGFIAQDQEQKVCKLQKSIYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYKKIVNSVV 995

Query: 362  AFLVLYVDDILLIGNDIGHLTDIKEWLATQFQIKDLGNAQYVLGIQIVRNRKNKTLTM 419
            AFL+LYVDDILLIGND+ +LTD+K+WL TQFQ+KDLG AQY+LGIQIVRNRKNKTL M
Sbjct: 996  AFLILYVDDILLIGNDVEYLTDVKKWLNTQFQMKDLGEAQYILGIQIVRNRKNKTLAM 1053

[Close]

BLAST of Cmc07g0195521 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 641.0 bits (1652), Expect = 7.3e-180
Identity = 319/423 (75.41%), Postives = 358/423 (84.63%), Query Frame = 0


Query: 2   TTIYILNNVLSKSVSETPYELWKGHKESLCHFRIWRCPVHVLVQNPKKLEHRSK-CLFVG 61
           T ++ILNNV SKSVSETP+ELW+G K SL HFRIW CP HVLV NPKKLE RS+ C FVG
Sbjct: 542 TAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQFVG 601

Query: 62  YSKESRGGLFNDSQENKVFVSTNATFLEEDHIRNHQTRSKLVLEEISKNTTN-----RPS 121
           Y KE+RGGLF D QEN+VFVSTNATFLEEDH+RNH+ RSKLVL E +  +T       PS
Sbjct: 602 YPKETRGGLFFDPQENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDESTRVVDEVGPS 661

Query: 122 SSTKVVDKTRNIGQTHPSQELGEPRRSGRVVRQPNRYFGLSEAQIIIPDDAIKDPLTYKQ 181
           S    VD+T   GQ+HPSQ L  PRRSGRVV QPNRY GL+E Q++IPDD ++DPL+YKQ
Sbjct: 662 SR---VDETTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTETQVVIPDDGVEDPLSYKQ 721

Query: 182 AMNDVDSDQLIKAMDLEMESMYSNSVWTLVDQPSEVRPIGCKWIYKRKRDQAGKVQTFKA 241
           AMNDVD DQ +KAMDLEMESMY NSVW LVD P  V+PIGCKWIYKRKRD AGKVQTFKA
Sbjct: 722 AMNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKA 781

Query: 242 RLVAKGYTQKEEIDYEETFSPVVMIKSIQILLSIATFYDYEIWQMDVKIAFLNGNLEESI 301
           RLVAKGYTQ+E +DYEETFSPV M+KSI+ILLSIATFYDYEIWQMDVK AFLNGNLEESI
Sbjct: 782 RLVAKGYTQREGVDYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESI 841

Query: 302 YMVQPKGYIQKDQEQKVCKLQKSIYGLKQASRSWNIRFDIAIKSYNFEQNVDEPCVYKRI 361
           +M QP+G+I + QEQKVCKL +SIYGLKQASRSWNIRFD AIKSY F+QNVDEPCVYK+I
Sbjct: 842 FMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKI 901

Query: 362 INSTVAFLVLYVDDILLIGNDIGHLTDIKEWLATQFQIKDLGNAQYVLGIQIVRNRKNKT 419
               VAFLVLYVDDILLIGND+G+LTD+K WLA QFQ+KDLG AQYVLGIQI+R+RKNKT
Sbjct: 902 NKGKVAFLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKT 961

[Close]

BLAST of Cmc07g0195521 vs. NCBI nr
Match: KAA0059226.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 641.0 bits (1652), Expect = 7.3e-180
Identity = 319/423 (75.41%), Postives = 358/423 (84.63%), Query Frame = 0


Query: 2   TTIYILNNVLSKSVSETPYELWKGHKESLCHFRIWRCPVHVLVQNPKKLEHRSK-CLFVG 61
           T ++ILNNV SKSVSETP+ELW+G K SL HFRIW CP HVLV NPKKLE RS+ C FVG
Sbjct: 416 TAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQFVG 475

Query: 62  YSKESRGGLFNDSQENKVFVSTNATFLEEDHIRNHQTRSKLVLEEISKNTTN-----RPS 121
           Y KE+RGGLF D QEN+VFVSTNATFLEEDH+RNH+ RSKLVL E +  +T       PS
Sbjct: 476 YPKETRGGLFFDPQENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDESTRVVDEVGPS 535

Query: 122 SSTKVVDKTRNIGQTHPSQELGEPRRSGRVVRQPNRYFGLSEAQIIIPDDAIKDPLTYKQ 181
           S    VD+T   GQ+HPSQ L  PRRSGRVV QPNRY GL+E Q++IPDD ++DPL+YKQ
Sbjct: 536 SR---VDETTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTETQVVIPDDGVEDPLSYKQ 595

Query: 182 AMNDVDSDQLIKAMDLEMESMYSNSVWTLVDQPSEVRPIGCKWIYKRKRDQAGKVQTFKA 241
           AMNDVD DQ +KAMDLEMESMY NSVW LVD P  V+PIGCKWIYKRKRD AGKVQTFKA
Sbjct: 596 AMNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKA 655

Query: 242 RLVAKGYTQKEEIDYEETFSPVVMIKSIQILLSIATFYDYEIWQMDVKIAFLNGNLEESI 301
           RLVAKGYTQ+E +DYEETFSPV M+KSI+ILLSIATFYDYEIWQMDVK AFLNGNLEESI
Sbjct: 656 RLVAKGYTQREGVDYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESI 715

Query: 302 YMVQPKGYIQKDQEQKVCKLQKSIYGLKQASRSWNIRFDIAIKSYNFEQNVDEPCVYKRI 361
           +M QP+G+I + QEQKVCKL +SIYGLKQASRSWNIRFD AIKSY F+QNVDEPCVYK+I
Sbjct: 716 FMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKI 775

Query: 362 INSTVAFLVLYVDDILLIGNDIGHLTDIKEWLATQFQIKDLGNAQYVLGIQIVRNRKNKT 419
               VAFLVLYVDDILLIGND+G+LTD+K WLA QFQ+KDLG AQYVLGIQI+R+RKNKT
Sbjct: 776 NKGKVAFLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKT 835

[Close]

BLAST of Cmc07g0195521 vs. NCBI nr
Match: TYK15984.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 637.1 bits (1642), Expect = 1.1e-178
Identity = 317/423 (74.94%), Postives = 357/423 (84.40%), Query Frame = 0


Query: 2   TTIYILNNVLSKSVSETPYELWKGHKESLCHFRIWRCPVHVLVQNPKKLEHRSK-CLFVG 61
           T ++ILNNV SKSVS+ P+ELW+G K SL HFRIW CP HVLV NPKKLE RS+ C FVG
Sbjct: 152 TAVHILNNVPSKSVSKIPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQFVG 211

Query: 62  YSKESRGGLFNDSQENKVFVSTNATFLEEDHIRNHQTRSKLVLEEISKNTTN-----RPS 121
           Y KE+RGGLF D QEN+VFVSTNATFLEEDH+RNH+ RSKLVL E +  +T       PS
Sbjct: 212 YPKETRGGLFFDPQENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDESTRVVDEVGPS 271

Query: 122 SSTKVVDKTRNIGQTHPSQELGEPRRSGRVVRQPNRYFGLSEAQIIIPDDAIKDPLTYKQ 181
           S    VD+T   GQ+HPSQ L  PRRSGRVV QPNRY GL+E Q++IPDD ++DPL+YKQ
Sbjct: 272 SR---VDETTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTETQVVIPDDGVEDPLSYKQ 331

Query: 182 AMNDVDSDQLIKAMDLEMESMYSNSVWTLVDQPSEVRPIGCKWIYKRKRDQAGKVQTFKA 241
           AMNDVD DQ +KAMDLEMESMY NSVW LVD P  V+PIGCKWIYKRKRD AGKVQTFKA
Sbjct: 332 AMNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKA 391

Query: 242 RLVAKGYTQKEEIDYEETFSPVVMIKSIQILLSIATFYDYEIWQMDVKIAFLNGNLEESI 301
           RLVAKGYTQ+E +DYEETFSPV M+KSI+ILLSIATFYDYEIWQMDVK AFLNGNLEESI
Sbjct: 392 RLVAKGYTQREGVDYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESI 451

Query: 302 YMVQPKGYIQKDQEQKVCKLQKSIYGLKQASRSWNIRFDIAIKSYNFEQNVDEPCVYKRI 361
           +M QP+G+I + QEQKVCKL +SIYGLKQASRSWNIRFD AIKSY F+QNVDEPCVYK+I
Sbjct: 452 FMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKI 511

Query: 362 INSTVAFLVLYVDDILLIGNDIGHLTDIKEWLATQFQIKDLGNAQYVLGIQIVRNRKNKT 419
               VAFLVLYVDDILLIGND+G+LTD+K WLA QFQ+KDLG AQYVLGIQI+R+RKNKT
Sbjct: 512 NKGKVAFLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKT 571

[Close]

BLAST of Cmc07g0195521 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 2.2e-70
Identity = 168/448 (37.50%), Postives = 251/448 (56.03%), Query Frame = 0


Query: 2    TTIYILNNVLSKSVS-ETPYELWKGHKESLCHFRIWRCP--VHVLVQNPKKLEHRS-KCL 61
            T  Y++N   S  ++ E P  +W   + S  H +++ C    HV  +   KL+ +S  C+
Sbjct: 616  TACYLINRSPSVPLAFEIPERVWTNKEVSYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCI 675

Query: 62   FVGYSKESRGGLFNDSQENKVFVSTNATFLEEDHIRNHQTRSKLVLEEISKN------TT 121
            F+GY  E  G    D  + KV  S +  F  E  +R     S+ V   I  N      T+
Sbjct: 676  FIGYGDEEFGYRLWDPVKKKVIRSRDVVF-RESEVRTAADMSEKVKNGIIPNFVTIPSTS 735

Query: 122  NRPSSSTKVVDKTRNIGQ-------------------THPSQ--ELGEP-RRSGRVVRQP 181
            N P+S+    D+    G+                    HP+Q  E  +P RRS R   + 
Sbjct: 736  NNPTSAESTTDEVSEQGEQPGEVIEQGEQLDEGVEEVEHPTQGEEQHQPLRRSERPRVES 795

Query: 182  NRYFGLSEAQIIIPDDAIKDPLTYKQAMNDVDSDQLIKAMDLEMESMYSNSVWTLVDQPS 241
             RY   S   ++I DD  ++P + K+ ++  + +QL+KAM  EMES+  N  + LV+ P 
Sbjct: 796  RRY--PSTEYVLISDD--REPESLKEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPK 855

Query: 242  EVRPIGCKWIYKRKRDQAGKVQTFKARLVAKGYTQKEEIDYEETFSPVVMIKSIQILLSI 301
              RP+ CKW++K K+D   K+  +KARLV KG+ QK+ ID++E FSPVV + SI+ +LS+
Sbjct: 856  GKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSL 915

Query: 302  ATFYDYEIWQMDVKIAFLNGNLEESIYMVQPKGYIQKDQEQKVCKLQKSIYGLKQASRSW 361
            A   D E+ Q+DVK AFL+G+LEE IYM QP+G+    ++  VCKL KS+YGLKQA R W
Sbjct: 916  AASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQW 975

Query: 362  NIRFDIAIKSYNFEQNVDEPCVY-KRIINSTVAFLVLYVDDILLIGNDIGHLTDIKEWLA 417
             ++FD  +KS  + +   +PCVY KR   +    L+LYVDD+L++G D G +  +K  L+
Sbjct: 976  YMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLS 1035

[Close]

BLAST of Cmc07g0195521 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 2.1e-44
Identity = 97/265 (36.60%), Postives = 154/265 (58.11%), Query Frame = 0


Query: 146  VRQPNRYFGLSEAQIIIPDDAIKDPLTYKQAMNDVDSDQLIKAMDLEMESMYSNSVWTLV 205
            +R+PN+ +  + +       A  +P T  QAM D   D+  +AM  E+ +   N  W LV
Sbjct: 920  IRKPNQKYSYATSLA-----ANSEPRTAIQAMKD---DRWRQAMGSEINAQIGNHTWDLV 979

Query: 206  -DQPSEVRPIGCKWIYKRKRDQAGKVQTFKARLVAKGYTQKEEIDYEETFSPVVMIKSIQ 265
               P  V  +GC+WI+ +K +  G +  +KARLVAKGY Q+  +DY ETFSPV+   SI+
Sbjct: 980  PPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIR 1039

Query: 266  ILLSIATFYDYEIWQMDVKIAFLNGNLEESIYMVQPKGYIQKDQEQKVCKLQKSIYGLKQ 325
            I+L +A    + I Q+DV  AFL G L + +YM QP G++ KD+   VC+L+K+IYGLKQ
Sbjct: 1040 IVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQ 1099

Query: 326  ASRSWNIRFDIAIKSYNFEQNVDEPCVYKRIINSTVAFLVLYVDDILLIGNDIGHLTDIK 385
            A R+W +     + +  F  ++ +  ++      ++ ++++YVDDIL+ GND   L    
Sbjct: 1100 APRAWYVELRTYLLTVGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTL 1159

Query: 386  EWLATQFQIKDLGNAQYVLGIQIVR 410
            + L+ +F +K+  +  Y LGI+  R
Sbjct: 1160 DALSQRFSVKEHEDLHYFLGIEAKR 1176

[Close]

BLAST of Cmc07g0195521 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 3.6e-44
Identity = 101/278 (36.33%), Postives = 156/278 (56.12%), Query Frame = 0


Query: 133  SQELGEPRRSGRVVRQPNRYFGLSEAQIIIPDDAIKDPLTYKQAMNDVDSDQLIKAMDLE 192
            +  +G   ++G +   P     +S A       A  +P T  QA+ D   ++   AM  E
Sbjct: 926  THSMGTRAKAGIIKPNPKYSLAVSLA-------AESEPRTAIQALKD---ERWRNAMGSE 985

Query: 193  MESMYSNSVWTLV-DQPSEVRPIGCKWIYKRKRDQAGKVQTFKARLVAKGYTQKEEIDYE 252
            + +   N  W LV   PS V  +GC+WI+ +K +  G +  +KARLVAKGY Q+  +DY 
Sbjct: 986  INAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRPGLDYA 1045

Query: 253  ETFSPVVMIKSIQILLSIATFYDYEIWQMDVKIAFLNGNLEESIYMVQPKGYIQKDQEQK 312
            ETFSPV+   SI+I+L +A    + I Q+DV  AFL G L + +YM QP G+I KD+   
Sbjct: 1046 ETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNY 1105

Query: 313  VCKLQKSIYGLKQASRSWNIRFDIAIKSYNFEQNVDEPCVYKRIINSTVAFLVLYVDDIL 372
            VCKL+K++YGLKQA R+W +     + +  F  +V +  ++      ++ ++++YVDDIL
Sbjct: 1106 VCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDIL 1165

Query: 373  LIGNDIGHLTDIKEWLATQFQIKDLGNAQYVLGIQIVR 410
            + GND   L +  + L+ +F +KD     Y LGI+  R
Sbjct: 1166 ITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKR 1193

[Close]

BLAST of Cmc07g0195521 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 172.2 bits (435), Expect = 1.3e-41
Identity = 116/364 (31.87%), Postives = 194/364 (53.30%), Query Frame = 0


Query: 58   FVGYSKESRGGLF-NDSQE-NKVFVSTNATFLEEDHIRNHQTRSKLVLEEISKNTTN-RP 117
            F   SKE     F  DS+E NK F++ +     +DH+              SK + N   
Sbjct: 780  FPNESKECDNIQFLKDSKESNKYFLNESKKRKRDDHLNE------------SKGSGNPNE 839

Query: 118  SSSTKVVDKTRNIGQTHPSQELGEP---RRSGRVVRQPNRYFGLSE---AQIIIPDDAIK 177
            S  ++  +  + IG  +P++  G     RRS R+  +P   +   +    ++++    I 
Sbjct: 840  SRESETAEHLKEIGIDNPTKNDGIEIINRRSERLKTKPQISYNEEDNSLNKVVLNAHTIF 899

Query: 178  D--PLTYKQAMNDVDSDQLIKAMDLEMESMYSNSVWTLVDQPSEVRPIGCKWIYKRKRDQ 237
            +  P ++ +     D     +A++ E+ +   N+ WT+  +P     +  +W++  K ++
Sbjct: 900  NDVPNSFDEIQYRDDKSSWEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNE 959

Query: 238  AGKVQTFKARLVAKGYTQKEEIDYEETFSPVVMIKSIQILLSIATFYDYEIWQMDVKIAF 297
             G    +KARLVA+G+TQK +IDYEETF+PV  I S + +LS+   Y+ ++ QMDVK AF
Sbjct: 960  LGNPIRYKARLVARGFTQKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAF 1019

Query: 298  LNGNLEESIYMVQPKGYIQKDQEQKVCKLQKSIYGLKQASRSWNIRFDIAIKSYNFEQNV 357
            LNG L+E IYM  P+G         VCKL K+IYGLKQA+R W   F+ A+K   F  + 
Sbjct: 1020 LNGTLKEEIYMRLPQGI--SCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSS 1079

Query: 358  DEPCVY---KRIINSTVAFLVLYVDDILLIGNDIGHLTDIKEWLATQFQIKDLGNAQYVL 408
             + C+Y   K  IN  + +++LYVDD+++   D+  + + K +L  +F++ DL   ++ +
Sbjct: 1080 VDRCIYILDKGNINENI-YVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFI 1128

[Close]

BLAST of Cmc07g0195521 vs. ExPASy Swiss-Prot
Match: Q12491 (Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-B PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.1e-13
Identity = 98/363 (27.00%), Postives = 161/363 (44.35%), Query Frame = 0


Query: 76   NKVFVSTNATFLEEDHIRNHQTRSKLVLEEISKNTTNRPSSSTKVVDK------TRNIGQ 135
            NK    T+    +  HI + QT S L   + S   T   S    + D       +R+   
Sbjct: 1153 NKSPTDTSDVSKDIPHIHSRQTNSSLGGMDDSNVLTTTKSKKRSLEDNETEIEVSRDTWN 1212

Query: 136  THPSQELGEPRRSGRVVRQPNRYFGLSEAQIIIPDDAIKDPLTYKQAM----NDVDSDQL 195
                + L  PR   R+    N    +   + I P   ++  L Y +A+    ++ + D+ 
Sbjct: 1213 NKNMRSLEPPRSKKRI----NLIAAIKGVKSIKP---VRTTLRYDEAITYNEDNKEKDRY 1272

Query: 196  IKAMDLEMESMYSNSVW--TLVDQPSEVRP---IGCKWIYKRKRDQAGKVQTFKARLVAK 255
            I+A   E+  +   + W        +++ P   I   +I+ +KRD      T KAR VA+
Sbjct: 1273 IEAYHKEINQLLRMNTWDTNKYYDRNDIDPKKVINSMFIFNKKRD-----GTHKARFVAR 1332

Query: 256  GYTQKEEIDYEETFSPVVMIKSIQILLSIATFYDYEIWQMDVKIAFLNGNLEESIYMVQP 315
            G  Q  +    +  S  V   ++   LSIA   DY I Q+D+  A+L  +++E +Y+  P
Sbjct: 1333 GDIQHPDTYDSDMQSNTVHHYALMTSLSIALDNDYYITQLDISSAYLYADIKEELYIRPP 1392

Query: 316  KGYIQKDQEQKVCKLQKSIYGLKQASRSWNIRFDIAIKSY-----NFEQNVDEPCVYKRI 375
                  D   K+ +L+KS+YGLKQ+  +W       IKSY     + ++     CV+K  
Sbjct: 1393 PHLGLND---KLLRLRKSLYGLKQSGANWY----ETIKSYLINCCDMQEVRGWSCVFK-- 1452

Query: 376  INSTVAFLVLYVDDILLIGNDIGHLTDIKEWLATQFQIK--DLGNA----QY-VLGIQIV 412
             NS V  + L+VDD++L   D+     I   L  Q+  K  +LG +    QY +LG++I 
Sbjct: 1453 -NSQVT-ICLFVDDMILFSKDLNANEKIITTLKKQYDTKIINLGESDNEIQYDILGLEIK 1492

[Close]

BLAST of Cmc07g0195521 vs. ExPASy TrEMBL
Match: A0A5D3BX45 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00740 PE=4 SV=1)

HSP 1 Score: 714.9 bits (1844), Expect = 1.9e-202
Identity = 363/418 (86.84%), Postives = 380/418 (90.91%), Query Frame = 0


Query: 2   TTIYILNNVLSKSVSETPYELWKGHKESLCHFRIWRCPVHVLVQNPKKLEHRSK-CLFVG 61
           TTIYILNNV SKSVSETPYELWKG K SL HFRIW CP HV VQNPKKLE RSK CLFVG
Sbjct: 61  TTIYILNNVPSKSVSETPYELWKGRKGSLRHFRIWGCPAHVFVQNPKKLERRSKLCLFVG 120

Query: 62  YSKESRGGLFNDSQENKVFVSTNATFLEEDHIRNHQTRSKLVLEEISKNTTNRPSSSTKV 121
           Y KES+GGLF D QENKVFVSTNATFLEEDHIRNHQTRSKLVLEEISKNTT+RPSS TKV
Sbjct: 121 YPKESKGGLFYDPQENKVFVSTNATFLEEDHIRNHQTRSKLVLEEISKNTTDRPSSFTKV 180

Query: 122 VDKTRNIGQTHPSQELGEPRRSGRVVRQPNRYFGLSEAQIIIPDDAIKDPLTYKQAMNDV 181
           VDKTRNIGQTH  QELG+PRRSGRVVRQ +RY GLSEAQIIIPDD I+DPLTYK AMNDV
Sbjct: 181 VDKTRNIGQTHHFQELGKPRRSGRVVRQSDRYLGLSEAQIIIPDDGIEDPLTYKHAMNDV 240

Query: 182 DSDQLIKAMDLEMESMYSNSVWTLVDQPSEVRPIGCKWIYKRKRDQAGKVQTFKARLVAK 241
           D DQ IKAMDLEMESMYSNSVWTLVDQP++V+PIGCKWIYKRKRDQAGKVQTFKARLVAK
Sbjct: 241 DRDQWIKAMDLEMESMYSNSVWTLVDQPNDVKPIGCKWIYKRKRDQAGKVQTFKARLVAK 300

Query: 242 GYTQKEEIDYEETFSPVVMIKSIQILLSIATFYDYEIWQMDVKIAFLNGNLEESIYMVQP 301
           GYTQKE IDYEE FS   MIKSI+ILLSIATFYDYEIWQMDVK  FLN NLEESIYMVQP
Sbjct: 301 GYTQKEGIDYEEVFS-FAMIKSIRILLSIATFYDYEIWQMDVKTTFLNANLEESIYMVQP 360

Query: 302 KGYIQKDQEQKVCKLQKSIYGLKQASRSWNIRFDIAIKSYNFEQNVDEPCVYKRIINSTV 361
           + +IQK QEQK+CKLQKSIYGLKQASRS NIRFD AIKSY  EQNVDEPCVYKRI+NSTV
Sbjct: 361 ERFIQKGQEQKICKLQKSIYGLKQASRSCNIRFDTAIKSYGLEQNVDEPCVYKRIMNSTV 420

Query: 362 AFLVLYVDDILLIGNDIGHLTDIKEWLATQFQIKDLGNAQYVLGIQIVRNRKNKTLTM 419
           AFLVLYVDDILLIGND+GHL DIK+WLA QFQ+KDLGNAQYVLG+QIVRNRKNKTL M
Sbjct: 421 AFLVLYVDDILLIGNDVGHLADIKKWLAMQFQMKDLGNAQYVLGVQIVRNRKNKTLAM 477

[Close]

BLAST of Cmc07g0195521 vs. ExPASy TrEMBL
Match: E2GK51 (Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1)

HSP 1 Score: 688.0 bits (1774), Expect = 2.5e-194
Identity = 343/418 (82.06%), Postives = 372/418 (89.00%), Query Frame = 0


Query: 2    TTIYILNNVLSKSVSETPYELWKGHKESLCHFRIWRCPVHVLVQNPKKLEHRSK-CLFVG 61
            T I+ILNNV SKSV ETPYELWKG K SL +FRIW CP HVLVQNPKKLE RSK CLFVG
Sbjct: 636  TAIHILNNVPSKSVLETPYELWKGRKSSLRYFRIWGCPAHVLVQNPKKLEPRSKLCLFVG 695

Query: 62   YSKESRGGLFNDSQENKVFVSTNATFLEEDHIRNHQTRSKLVLEEISKNTTNRPSSSTKV 121
            Y KESRGGLF   QENKVFVSTNATFLEEDH RNHQ RSK+VL+E+ KN T++PSSSTKV
Sbjct: 696  YPKESRGGLFYHPQENKVFVSTNATFLEEDHXRNHQPRSKIVLKEMFKNATDKPSSSTKV 755

Query: 122  VDKTRNIGQTHPSQELGEPRRSGRVVRQPNRYFGLSEAQIIIPDDAIKDPLTYKQAMNDV 181
            VDK     Q+H SQEL  PRRSGRVV QPNRY GL E QIIIPDD ++DPLTYKQAMNDV
Sbjct: 756  VDKANISDQSHTSQELRVPRRSGRVVHQPNRYLGLVETQIIIPDDGVEDPLTYKQAMNDV 815

Query: 182  DSDQLIKAMDLEMESMYSNSVWTLVDQPSEVRPIGCKWIYKRKRDQAGKVQTFKARLVAK 241
            D DQ IKAM+LEMESMY NSVWTLVD PS+V+PIGCKWIYKRKRDQAGKVQTFKARLVAK
Sbjct: 816  DRDQWIKAMNLEMESMYFNSVWTLVDLPSDVKPIGCKWIYKRKRDQAGKVQTFKARLVAK 875

Query: 242  GYTQKEEIDYEETFSPVVMIKSIQILLSIATFYDYEIWQMDVKIAFLNGNLEESIYMVQP 301
            GYTQKE +DYEETFSPV M+KSI+ILLSIATFY+YEIWQMDVK AFLNGNLEESIYMVQP
Sbjct: 876  GYTQKEGVDYEETFSPVAMLKSIRILLSIATFYNYEIWQMDVKTAFLNGNLEESIYMVQP 935

Query: 302  KGYIQKDQEQKVCKLQKSIYGLKQASRSWNIRFDIAIKSYNFEQNVDEPCVYKRIINSTV 361
            +G+I +DQEQKVCKLQKSIYGLKQASRSWNIRFD AIKSY FEQNVDEPCVYK+I+NS V
Sbjct: 936  EGFIAQDQEQKVCKLQKSIYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYKKIVNSVV 995

Query: 362  AFLVLYVDDILLIGNDIGHLTDIKEWLATQFQIKDLGNAQYVLGIQIVRNRKNKTLTM 419
            AFL+LYVDDILLIGND+ +LTD+K+WL TQFQ+KDLG AQY+LGIQIVRNRKNKTL M
Sbjct: 996  AFLILYVDDILLIGNDVEYLTDVKKWLNTQFQMKDLGEAQYILGIQIVRNRKNKTLAM 1053

[Close]

BLAST of Cmc07g0195521 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 641.0 bits (1652), Expect = 3.6e-180
Identity = 319/423 (75.41%), Postives = 358/423 (84.63%), Query Frame = 0


Query: 2   TTIYILNNVLSKSVSETPYELWKGHKESLCHFRIWRCPVHVLVQNPKKLEHRSK-CLFVG 61
           T ++ILNNV SKSVSETP+ELW+G K SL HFRIW CP HVLV NPKKLE RS+ C FVG
Sbjct: 542 TAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQFVG 601

Query: 62  YSKESRGGLFNDSQENKVFVSTNATFLEEDHIRNHQTRSKLVLEEISKNTTN-----RPS 121
           Y KE+RGGLF D QEN+VFVSTNATFLEEDH+RNH+ RSKLVL E +  +T       PS
Sbjct: 602 YPKETRGGLFFDPQENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDESTRVVDEVGPS 661

Query: 122 SSTKVVDKTRNIGQTHPSQELGEPRRSGRVVRQPNRYFGLSEAQIIIPDDAIKDPLTYKQ 181
           S    VD+T   GQ+HPSQ L  PRRSGRVV QPNRY GL+E Q++IPDD ++DPL+YKQ
Sbjct: 662 SR---VDETTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTETQVVIPDDGVEDPLSYKQ 721

Query: 182 AMNDVDSDQLIKAMDLEMESMYSNSVWTLVDQPSEVRPIGCKWIYKRKRDQAGKVQTFKA 241
           AMNDVD DQ +KAMDLEMESMY NSVW LVD P  V+PIGCKWIYKRKRD AGKVQTFKA
Sbjct: 722 AMNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKA 781

Query: 242 RLVAKGYTQKEEIDYEETFSPVVMIKSIQILLSIATFYDYEIWQMDVKIAFLNGNLEESI 301
           RLVAKGYTQ+E +DYEETFSPV M+KSI+ILLSIATFYDYEIWQMDVK AFLNGNLEESI
Sbjct: 782 RLVAKGYTQREGVDYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESI 841

Query: 302 YMVQPKGYIQKDQEQKVCKLQKSIYGLKQASRSWNIRFDIAIKSYNFEQNVDEPCVYKRI 361
           +M QP+G+I + QEQKVCKL +SIYGLKQASRSWNIRFD AIKSY F+QNVDEPCVYK+I
Sbjct: 842 FMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKI 901

Query: 362 INSTVAFLVLYVDDILLIGNDIGHLTDIKEWLATQFQIKDLGNAQYVLGIQIVRNRKNKT 419
               VAFLVLYVDDILLIGND+G+LTD+K WLA QFQ+KDLG AQYVLGIQI+R+RKNKT
Sbjct: 902 NKGKVAFLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKT 961

[Close]

BLAST of Cmc07g0195521 vs. ExPASy TrEMBL
Match: A0A5A7UYE8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001570 PE=4 SV=1)

HSP 1 Score: 641.0 bits (1652), Expect = 3.6e-180
Identity = 319/423 (75.41%), Postives = 358/423 (84.63%), Query Frame = 0


Query: 2   TTIYILNNVLSKSVSETPYELWKGHKESLCHFRIWRCPVHVLVQNPKKLEHRSK-CLFVG 61
           T ++ILNNV SKSVSETP+ELW+G K SL HFRIW CP HVLV NPKKLE RS+ C FVG
Sbjct: 416 TAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQFVG 475

Query: 62  YSKESRGGLFNDSQENKVFVSTNATFLEEDHIRNHQTRSKLVLEEISKNTTN-----RPS 121
           Y KE+RGGLF D QEN+VFVSTNATFLEEDH+RNH+ RSKLVL E +  +T       PS
Sbjct: 476 YPKETRGGLFFDPQENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDESTRVVDEVGPS 535

Query: 122 SSTKVVDKTRNIGQTHPSQELGEPRRSGRVVRQPNRYFGLSEAQIIIPDDAIKDPLTYKQ 181
           S    VD+T   GQ+HPSQ L  PRRSGRVV QPNRY GL+E Q++IPDD ++DPL+YKQ
Sbjct: 536 SR---VDETTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTETQVVIPDDGVEDPLSYKQ 595

Query: 182 AMNDVDSDQLIKAMDLEMESMYSNSVWTLVDQPSEVRPIGCKWIYKRKRDQAGKVQTFKA 241
           AMNDVD DQ +KAMDLEMESMY NSVW LVD P  V+PIGCKWIYKRKRD AGKVQTFKA
Sbjct: 596 AMNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKA 655

Query: 242 RLVAKGYTQKEEIDYEETFSPVVMIKSIQILLSIATFYDYEIWQMDVKIAFLNGNLEESI 301
           RLVAKGYTQ+E +DYEETFSPV M+KSI+ILLSIATFYDYEIWQMDVK AFLNGNLEESI
Sbjct: 656 RLVAKGYTQREGVDYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESI 715

Query: 302 YMVQPKGYIQKDQEQKVCKLQKSIYGLKQASRSWNIRFDIAIKSYNFEQNVDEPCVYKRI 361
           +M QP+G+I + QEQKVCKL +SIYGLKQASRSWNIRFD AIKSY F+QNVDEPCVYK+I
Sbjct: 716 FMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKI 775

Query: 362 INSTVAFLVLYVDDILLIGNDIGHLTDIKEWLATQFQIKDLGNAQYVLGIQIVRNRKNKT 419
               VAFLVLYVDDILLIGND+G+LTD+K WLA QFQ+KDLG AQYVLGIQI+R+RKNKT
Sbjct: 776 NKGKVAFLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKT 835

[Close]

BLAST of Cmc07g0195521 vs. ExPASy TrEMBL
Match: A0A5D3CYF4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G001110 PE=4 SV=1)

HSP 1 Score: 637.1 bits (1642), Expect = 5.1e-179
Identity = 317/423 (74.94%), Postives = 357/423 (84.40%), Query Frame = 0


Query: 2   TTIYILNNVLSKSVSETPYELWKGHKESLCHFRIWRCPVHVLVQNPKKLEHRSK-CLFVG 61
           T ++ILNNV SKSVS+ P+ELW+G K SL HFRIW CP HVLV NPKKLE RS+ C FVG
Sbjct: 152 TAVHILNNVPSKSVSKIPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQFVG 211

Query: 62  YSKESRGGLFNDSQENKVFVSTNATFLEEDHIRNHQTRSKLVLEEISKNTTN-----RPS 121
           Y KE+RGGLF D QEN+VFVSTNATFLEEDH+RNH+ RSKLVL E +  +T       PS
Sbjct: 212 YPKETRGGLFFDPQENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDESTRVVDEVGPS 271

Query: 122 SSTKVVDKTRNIGQTHPSQELGEPRRSGRVVRQPNRYFGLSEAQIIIPDDAIKDPLTYKQ 181
           S    VD+T   GQ+HPSQ L  PRRSGRVV QPNRY GL+E Q++IPDD ++DPL+YKQ
Sbjct: 272 SR---VDETTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTETQVVIPDDGVEDPLSYKQ 331

Query: 182 AMNDVDSDQLIKAMDLEMESMYSNSVWTLVDQPSEVRPIGCKWIYKRKRDQAGKVQTFKA 241
           AMNDVD DQ +KAMDLEMESMY NSVW LVD P  V+PIGCKWIYKRKRD AGKVQTFKA
Sbjct: 332 AMNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKA 391

Query: 242 RLVAKGYTQKEEIDYEETFSPVVMIKSIQILLSIATFYDYEIWQMDVKIAFLNGNLEESI 301
           RLVAKGYTQ+E +DYEETFSPV M+KSI+ILLSIATFYDYEIWQMDVK AFLNGNLEESI
Sbjct: 392 RLVAKGYTQREGVDYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESI 451

Query: 302 YMVQPKGYIQKDQEQKVCKLQKSIYGLKQASRSWNIRFDIAIKSYNFEQNVDEPCVYKRI 361
           +M QP+G+I + QEQKVCKL +SIYGLKQASRSWNIRFD AIKSY F+QNVDEPCVYK+I
Sbjct: 452 FMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKI 511

Query: 362 INSTVAFLVLYVDDILLIGNDIGHLTDIKEWLATQFQIKDLGNAQYVLGIQIVRNRKNKT 419
               VAFLVLYVDDILLIGND+G+LTD+K WLA QFQ+KDLG AQYVLGIQI+R+RKNKT
Sbjct: 512 NKGKVAFLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKT 571

[Close]

BLAST of Cmc07g0195521 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 194.9 bits (494), Expect = 1.3e-49
Identity = 97/247 (39.27%), Postives = 156/247 (63.16%), Query Frame = 0


Query: 168 KDPLTYKQAMNDVDSDQLIKAMDLEMESMYSNSVWTLVDQPSEVRPIGCKWIYKRKRDQA 227
           K+P TY +A   +       AMD E+ +M +   W +   P   +PIGCKW+YK K +  
Sbjct: 84  KEPSTYNEAKEFL---VWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSD 143

Query: 228 GKVQTFKARLVAKGYTQKEEIDYEETFSPVVMIKSIQILLSIATFYDYEIWQMDVKIAFL 287
           G ++ +KARLVAKGYTQ+E ID+ ETFSPV  + S++++L+I+  Y++ + Q+D+  AFL
Sbjct: 144 GTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFL 203

Query: 288 NGNLEESIYMVQPKGYIQKDQE----QKVCKLQKSIYGLKQASRSWNIRFDIAIKSYNFE 347
           NG+L+E IYM  P GY  +  +      VC L+KSIYGLKQASR W ++F + +  + F 
Sbjct: 204 NGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFV 263

Query: 348 QNVDEPCVYKRIINSTVAFLVLYVDDILLIGNDIGHLTDIKEWLATQFQIKDLGNAQYVL 407
           Q+  +   + +I  +    +++YVDDI++  N+   + ++K  L + F+++DLG  +Y L
Sbjct: 264 QSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFL 323

Query: 408 GIQIVRN 411
           G++I R+
Sbjct: 324 GLEIARS 327

[Close]

BLAST of Cmc07g0195521 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 74.3 bits (181), Expect = 2.6e-13
Identity = 35/84 (41.67%), Postives = 53/84 (63.10%), Query Frame = 0


Query: 187 KAMDLEMESMYSNSVWTLVDQPSEVRPIGCKWIYKRKRDQAGKVQTFKARLVAKGYTQKE 246
           +AM  E++++  N  W LV  P     +GCKW++K K    G +   KARLVAKG+ Q+E
Sbjct: 42  QAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEE 101

Query: 247 EIDYEETFSPVVMIKSIQILLSIA 271
            I + ET+SPVV   +I+ +L++A
Sbjct: 102 GIYFVETYSPVVRTATIRTILNVA 125

[Close]

BLAST of Cmc07g0195521 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 43.1 bits (100), Expect = 6.3e-04
Identity = 23/46 (50.00%), Postives = 30/46 (65.22%), Query Frame = 0


Query: 362 FLVLYVDDILLIGNDIGHLTDIKEWLATQFQIKDLGNAQYVLGIQI 408
           +L+LYVDDILL G+    L  +   L++ F +KDLG   Y LGIQI
Sbjct: 2   YLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQI 47

The following BLAST results are available for this feature:

BLAST of Cmc07g0195521 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK03644.1	4.0e-202	86.84	gag/pol protein [Cucumis melo var. makuwa]	[more]
ADJ18449.1	5.2e-194	82.06	gag/pol protein, partial [Bryonia dioica]	[more]
KAA0025945.1	7.3e-180	75.41	gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi...	[more]
KAA0059226.1	7.3e-180	75.41	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK15984.1	1.1e-178	74.94	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc07g0195521 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	2.2e-70	37.50	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	2.1e-44	36.60	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	3.6e-44	36.33	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P04146	1.3e-41	31.87	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q12491	1.1e-13	27.00	Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc07g0195521 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BX45	1.9e-202	86.84	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G007...	[more]
E2GK51	2.5e-194	82.06	Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1	[more]
A0A5A7TZD0	3.6e-180	75.41	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]
A0A5A7UYE8	3.6e-180	75.41	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G0015...	[more]
A0A5D3CYF4	5.1e-179	74.94	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00111...	[more]

BLAST of Cmc07g0195521 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.3e-49	39.27	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	2.6e-13	41.67	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]
ATMG00810.1	6.3e-04	50.00	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 199..415 e-value: 7.0E-69 score: 232.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 109..144
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 109..136
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 1..417
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 199..407

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc07g0195521.1	Cmc07g0195521.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding