Cmc07g0194841 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc07g0194841
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	DEAD-box ATP-dependent RNA helicase 32
Location	CMiso1.1chr07: 17749784 .. 17751283 (-)
RNA-Seq Expression	Cmc07g0194841
Synteny	Cmc07g0194841

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTAGGATCAAGTTAATTGGAGAATTTTTACTGTCAACTAGGGAGTACCTTGTTTGGCTAAAATCTCCAGGTAAGAGATTCTCCTACTAGACCTTCGAACTGAATTCAAGAGACCGCATGTAATTATGATTATGCATTGATGGTAGCTAAAATGCATAACTTGATGCTACTGATAATGACTGTCATTGTATTGATGTTGATGATGATGACTGAGATTATTATGTTGATGATTGATGATGATGACTGATGTTATGTTAATGACCGGTAGTATGTTGTTGATGACTGTTGATGATTTTAATGCATGATATATTAATCACATGATTAAGGACGTTAAGATTAATACTCATGCCATGTTATGATGTTATGTTATGCTACATGCTATGGATAGGGTGTTCTGTTAACTTTGTCTATTAGAGTCGTACCTGCATGGGTGTCCTTCGGGATCACCACCTATTTAGGACTGTGTGGTTCGACGGGACGCCAGTCTAGCATGGATATAGATATGATTCGAGTGATTCGACGGGGTCCTCGCATCTCGATTGTCTTAGTGTTACCCCCGGGTTCACTACAGACCAGCATGTCCTAGGTGCTCCCTCGGGACACCGAAGACCAGATTTTCGTTCCTACGGGAGCGTATGTTGCACGTTTTCGGGAACGTGCCAGAGATTGGGTACCTTTTTCAGGGCTCTAATGGGAAGTTAACAGACACCTAGCGGGACTAGTAGTAGGTCCCTTACTGAGTATATGTTTATACTCACTATTTCTATGTTTAACATTTCAGGCGAAGGTAAAGGTAGAGGAAAGCTGGCGAGCGACAGAGAAGGATCCGTGACATGCCATATGGGGACTCAGTTTTGCTTCCGCGTTTATGTTTCAGTGTTTTAATATTCCATTTTTAATAAAAATTTATTCTTCCCTCGTTTCAAAAAAGTGTCTCTTGTCATTGTTCCCTTTTGGTAACGACCTCAGCTTAGTATAAAGAGTTGGGTCGTTACAGTTTATAAGTAGGACTTCAAGCATATCAAACGCATTTAATCAATCAAGTGTATGAGTGAAAAATACTTAGTGTATCTACAGTACATTAGGTGTATCTAACATATAACGTGTATCAACGTATCAAATTTGTTGAGTGGACCAATGAAACATAATAAGTTTATTAGCAGTGCATCGAACGTATTAAACTTATCAATGAAGCACTTAAGTGTATAAGGATCGAAAGGGTATCGAGTGTTTCAAATAGAATCAATTGCAAGGAGTATCATCAAGGTGTTTTAGGTGTATCAAAAGGTATCAAGTGTATCAAGTTCCAAAGTTTATCAAGAAGTATATCAAATGTATATATCAAGTGTATCAAAGAATATCAGGTGTATCAGGGGATGTTATGTGTGTTATATGTATCAGGTATATCAAATGTGTATCAGTAACGAAAGCATTTGTGATATTTTACATCTTGTATATGTGGATTAGACTTTGTTTTTGCCATTTTTGCAAACAATA

mRNA sequence

ATGATTAGGATCAAGTTAATTGGAGAATTTTTACTGTCAACTAGGGAGTACCTTGTTTGGCTAAAATCTCCAGGCGAAGGTAAAGGTAGAGGAAAGCTGGCGAGCGACAGAGAAGGATCCGTGACATGCCATATGGGGACTCAGTTTTGCTTCCGCGTTTATGTTTCAGTGTTTTAATATTCCATTTTTAATAAAAATTTATTCTTCCCTCGTTTCAAAAAAGTGTCTCTTGTCATTGTTCCCTTTTGGTAACGACCTCAGCTTAGTATAAAGAGTTGGGTCGTTACAGTTTATAAGTAGGACTTCAAGCATATCAAACGCATTTAATCAATCAAGTGTATGAGTGAAAAATACTTAGTGTATCTACAGTACATTAGGTGTATCTAACATATAACGTGTATCAACGTATCAAATTTGTTGAGTGGACCAATGAAACATAATAAGTTTATTAGCAGTGCATCGAACGTATTAAACTTATCAATGAAGCACTTAAGTGTATAAGGATCGAAAGGGTATCGAGTGTTTCAAATAGAATCAATTGCAAGGAGTATCATCAAGGTGTTTTAGGTGTATCAAAAGGTATCAAGTGTATCAAGTTCCAAAGTTTATCAAGAAGTATATCAAATGTATATATCAAGTGTATCAAAGAATATCAGGTGTATCAGGGGATGTTATGTGTGTTATATGTATCAGGTATATCAAATGTGTATCAGTAACGAAAGCATTTGTGATATTTTACATCTTGTATATGTGGATTAGACTTTGTTTTTGCCATTTTTGCAAACAATA

Coding sequence (CDS)

ATGATTAGGATCAAGTTAATTGGAGAATTTTTACTGTCAACTAGGGAGTACCTTGTTTGGCTAAAATCTCCAGGCGAAGGTAAAGGTAGAGGAAAGCTGGCGAGCGACAGAGAAGGATCCGTGACATGCCATATGGGGACTCAGTTTTGCTTCCGCGTTTATGTTTCAGTGTTTTAA

Protein sequence

MIRIKLIGEFLLSTREYLVWLKSPGEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF

Homology

[Close]

BLAST of Cmc07g0194841 vs. NCBI nr
Match: KAA0033961.1 (DEAD-box ATP-dependent RNA helicase 32 [Cucumis melo var. makuwa] >TYK02583.1 DEAD-box ATP-dependent RNA helicase 32 [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 7.4e-14
Identity = 53/100 (53.00%), Postives = 54/100 (54.00%), Query Frame = 0


Query: 1  MIRIKLIGEFLLSTREYLVWLKSP------------------------------------ 59
          MIRIKLIGEFLLSTREYLVWLKSP                                    
Sbjct: 1  MIRIKLIGEFLLSTREYLVWLKSPDQHVLGAPPGHRRPDFRSYGSACCTCSGTCQRLGTI 60

[Close]

BLAST of Cmc07g0194841 vs. NCBI nr
Match: KAA0051087.1 (transposase [Cucumis melo var. makuwa] >TYK12105.1 transposase [Cucumis melo var. makuwa])

HSP 1 Score: 80.9 bits (198), Expect = 4.1e-12
Identity = 50/109 (45.87%), Postives = 52/109 (47.71%), Query Frame = 0


Query: 4   IKLIGEFLLSTREYLVWLKS---------------------------------------- 59
           IKLIGEFLLS REY VWLKS                                        
Sbjct: 725 IKLIGEFLLSLREYFVWLKSQESYLHGCPSGSLPIQECVVRRNRQSSMDIDMIRVIRRDP 784

[Close]

BLAST of Cmc07g0194841 vs. NCBI nr
Match: KAA0045385.1 (hypothetical protein E6C27_scaffold442G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 1.2e-11
Identity = 37/55 (67.27%), Postives = 42/55 (76.36%), Query Frame = 0


Query: 4  IKLIGEFLLSTREYLVWLKSPGEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 59
          I +I       R  +V +  PGEGKGRGKLASD+EGSVTCHMGTQFCFRVYV+VF
Sbjct: 3  INMIRVIRRDPRSLIVLVFPPGEGKGRGKLASDKEGSVTCHMGTQFCFRVYVAVF 57

[Close]

BLAST of Cmc07g0194841 vs. NCBI nr
Match: KAA0063966.1 (hypothetical protein E6C27_scaffold616G001210 [Cucumis melo var. makuwa])

HSP 1 Score: 76.6 bits (187), Expect = 7.7e-11
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 18 LVWLKSPGEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 59
          +V +   GEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF
Sbjct: 17 IVLVLPQGEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 57

[Close]

BLAST of Cmc07g0194841 vs. NCBI nr
Match: TYJ98810.1 (hypothetical protein E5676_scaffold703G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 1.3e-10
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0


Query: 25 GEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 59
          GEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF
Sbjct: 28 GEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 61

[Close]

BLAST of Cmc07g0194841 vs. ExPASy TrEMBL
Match: A0A5A7SWX3 (DEAD-box ATP-dependent RNA helicase 32 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold925G00360 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.6e-14
Identity = 53/100 (53.00%), Postives = 54/100 (54.00%), Query Frame = 0


Query: 1  MIRIKLIGEFLLSTREYLVWLKSP------------------------------------ 59
          MIRIKLIGEFLLSTREYLVWLKSP                                    
Sbjct: 1  MIRIKLIGEFLLSTREYLVWLKSPDQHVLGAPPGHRRPDFRSYGSACCTCSGTCQRLGTI 60

[Close]

BLAST of Cmc07g0194841 vs. ExPASy TrEMBL
Match: A0A5D3CKP0 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00380 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.0e-12
Identity = 50/109 (45.87%), Postives = 52/109 (47.71%), Query Frame = 0


Query: 4   IKLIGEFLLSTREYLVWLKS---------------------------------------- 59
           IKLIGEFLLS REY VWLKS                                        
Sbjct: 725 IKLIGEFLLSLREYFVWLKSQESYLHGCPSGSLPIQECVVRRNRQSSMDIDMIRVIRRDP 784

[Close]

BLAST of Cmc07g0194841 vs. ExPASy TrEMBL
Match: A0A5A7TVG7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold442G00010 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 5.7e-12
Identity = 37/55 (67.27%), Postives = 42/55 (76.36%), Query Frame = 0


Query: 4  IKLIGEFLLSTREYLVWLKSPGEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 59
          I +I       R  +V +  PGEGKGRGKLASD+EGSVTCHMGTQFCFRVYV+VF
Sbjct: 3  INMIRVIRRDPRSLIVLVFPPGEGKGRGKLASDKEGSVTCHMGTQFCFRVYVAVF 57

[Close]

BLAST of Cmc07g0194841 vs. ExPASy TrEMBL
Match: A0A5A7VC05 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G001210 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.7e-11
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 18 LVWLKSPGEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 59
          +V +   GEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF
Sbjct: 17 IVLVLPQGEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 57

[Close]

BLAST of Cmc07g0194841 vs. ExPASy TrEMBL
Match: A0A5A7VJ46 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1567G00510 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 6.3e-11
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0


Query: 25 GEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 59
          GEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF
Sbjct: 61 GEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 94

The following BLAST results are available for this feature:

BLAST of Cmc07g0194841 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033961.1	7.4e-14	53.00	DEAD-box ATP-dependent RNA helicase 32 [Cucumis melo var. makuwa] >TYK02583.1 DE...	[more]
KAA0051087.1	4.1e-12	45.87	transposase [Cucumis melo var. makuwa] >TYK12105.1 transposase [Cucumis melo var...	[more]
KAA0045385.1	1.2e-11	67.27	hypothetical protein E6C27_scaffold442G00010 [Cucumis melo var. makuwa]	[more]
KAA0063966.1	7.7e-11	85.37	hypothetical protein E6C27_scaffold616G001210 [Cucumis melo var. makuwa]	[more]
TYJ98810.1	1.3e-10	100.00	hypothetical protein E5676_scaffold703G00090 [Cucumis melo var. makuwa]	[more]

BLAST of Cmc07g0194841 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc07g0194841 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SWX3	3.6e-14	53.00	DEAD-box ATP-dependent RNA helicase 32 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A5D3CKP0	2.0e-12	45.87	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00380 PE...	[more]
A0A5A7TVG7	5.7e-12	67.27	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7VC05	3.7e-11	85.37	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7VJ46	6.3e-11	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Cmc07g0194841 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc07g0194841.1	Cmc07g0194841.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding