Cmc03g0084311 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc03g0084311
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	CMiso1.1chr03: 28589024 .. 28589998 (-)
RNA-Seq Expression	Cmc03g0084311
Synteny	Cmc03g0084311

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAAAAGGTATATGGATTTCAAAAGCCCTGGATCTCAAGCACAAGAAGGAACTTTCTTTGGATTAGAAGCTGCTTTTGAAGGTCTCGAGCCCGGGTAATTTACATTTCTCTTGAAATTCTTCGAATCTTAGATAAAAAATTGCAACATGAAACACAATGATATGATAATGATATCGTTCATTTCAGGTATAACCTGTCAATTCTATACAAAGGCACCGTCTTACTATTCTGTCTCACATTCTATCAAAACTCATACTTTGAAGGTAGTTTTGAAACGGTCATAAAAAGTGGAAGGAAGGAGTATGAAATTTTTTAAAATAAAGGATCTGAAGTTGATAGGATGCTCTTTTGTTCATTTAACCAACTAGAATGCCCTAGAATATGAACAGTTTTTTTTTTTTTTTTTTACTTTGAGGGATGATTAACTTGCAGATACCCTGGGGGTCCTCTGTTGAATCCTCTTGGCATTGCTAAAGATGTCAAGAATGCTCATGACTGGAAACTCAAGGAGATTAAGAATGGTTAAATTTTCCACTCACATCCTCATCAAATTTTTCGTCTATCGTTTTCCCGGATTAATCTTTGTTCGTTCAAATTACAGGACGGCTTGCGATGGTAGCCATGCTTGGGATCTTCGTGCAAGCTTATGTTACTCATACAGGGCCAATAGATAACCTTGTGGAGCACCTTTCTAATCCATGGCACAAGACTATTATCCAGACACTTTCAAGCTCAAGTCCTTAAAGAACAAGATGTTGAAACTTGATAGTTTCTCTACTCAATGAGCAAAATATAACATGACATTGGAGATTTATCAGCTAAAAAAGAGTACAGATGAAAGAACAAATGACCTTGTAATTTGATTTGATCAATACAACAGATCGGAAATTCGTTTTGATTTTTATATTTGTCCTTTCTGCTGCTGCTACCTATTTCAAACAAGAGATTAAACAAAAGCACAAACTAGAAGAGGTT

mRNA sequence

CTAAAAGGTATATGGATTTCAAAAGCCCTGGATCTCAAGCACAAGAAGGAACTTTCTTTGGATTAGAAGCTGCTTTTGAAGGTCTCGAGCCCGGATACCCTGGGGGTCCTCTGTTGAATCCTCTTGGCATTGCTAAAGATGTCAAGAATGCTCATGACTGGAAACTCAAGGAGATTAAGAATGGACGGCTTGCGATGGTAGCCATGCTTGGGATCTTCGTGCAAGCTTATGTTACTCATACAGGGCCAATAGATAACCTTGTGGAGCACCTTTCTAATCCATGGCACAAGACTATTATCCAGACACTTTCAAGCTCAAGTCCTTAAAGAACAAGATGTTGAAACTTGATAGTTTCTCTACTCAATGAGCAAAATATAACATGACATTGGAGATTTATCAGCTAAAAAAGAGTACAGATGAAAGAACAAATGACCTTGTAATTTGATTTGATCAATACAACAGATCGGAAATTCGTTTTGATTTTTATATTTGTCCTTTCTGCTGCTGCTACCTATTTCAAACAAGAGATTAAACAAAAGCACAAACTAGAAGAGGTT

Coding sequence (CDS)

ATGGATTTCAAAAGCCCTGGATCTCAAGCACAAGAAGGAACTTTCTTTGGATTAGAAGCTGCTTTTGAAGGTCTCGAGCCCGGATACCCTGGGGGTCCTCTGTTGAATCCTCTTGGCATTGCTAAAGATGTCAAGAATGCTCATGACTGGAAACTCAAGGAGATTAAGAATGGACGGCTTGCGATGGTAGCCATGCTTGGGATCTTCGTGCAAGCTTATGTTACTCATACAGGGCCAATAGATAACCTTGTGGAGCACCTTTCTAATCCATGGCACAAGACTATTATCCAGACACTTTCAAGCTCAAGTCCTTAA

Protein sequence

MDFKSPGSQAQEGTFFGLEAAFEGLEPGYPGGPLLNPLGIAKDVKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTLSSSSP

Homology

[Close]

BLAST of Cmc03g0084311 vs. NCBI nr
Match: XP_008444623.1 (PREDICTED: photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucumis melo] >KAA0060903.1 photosystem I chlorophyll a/b-binding protein 5 [Cucumis melo var. makuwa])

HSP 1 Score: 219.2 bits (557), Expect = 1.7e-53
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MDFKSPGSQAQEGTFFGLEAAFEGLEPGYPGGPLLNPLGIAKDVKNAHDWKLKEIKNGRL 60
           MDFKSPGSQAQEGTFFGLEAAFEGLEPGYPGGPLLNPLGIAKDVKNAHDWKLKEIKNGRL
Sbjct: 157 MDFKSPGSQAQEGTFFGLEAAFEGLEPGYPGGPLLNPLGIAKDVKNAHDWKLKEIKNGRL 216

Query: 61  AMVAMLGIFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTLSSSSP 105
           AMVAMLGIFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTLSSSSP
Sbjct: 217 AMVAMLGIFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTLSSSSP 260

[Close]

BLAST of Cmc03g0084311 vs. NCBI nr
Match: XP_004150882.1 (photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucumis sativus] >KGN62506.1 hypothetical protein Csa_022315 [Cucumis sativus])

HSP 1 Score: 217.2 bits (552), Expect = 6.5e-53
Identity = 102/104 (98.08%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MDFKSPGSQAQEGTFFGLEAAFEGLEPGYPGGPLLNPLGIAKDVKNAHDWKLKEIKNGRL 60
           MDFKSPGSQAQEGTFFGLEAAF+GLEPGYPGGPLLNPLGIAKD+KNAHDWKLKEIKNGRL
Sbjct: 156 MDFKSPGSQAQEGTFFGLEAAFKGLEPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRL 215

Query: 61  AMVAMLGIFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTLSSSSP 105
           AMVAMLGIFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTLSSSSP
Sbjct: 216 AMVAMLGIFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTLSSSSP 259

[Close]

BLAST of Cmc03g0084311 vs. NCBI nr
Match: XP_022144175.1 (photosystem I chlorophyll a/b-binding protein 5, chloroplastic isoform X1 [Momordica charantia])

HSP 1 Score: 212.6 bits (540), Expect = 1.6e-51
Identity = 99/104 (95.19%), Postives = 102/104 (98.08%), Query Frame = 0


Query: 1   MDFKSPGSQAQEGTFFGLEAAFEGLEPGYPGGPLLNPLGIAKDVKNAHDWKLKEIKNGRL 60
           MDFKSPGSQAQEGTFFGLEAA EGLEPGYPGGPLLNPLG+AKD+KNAHDWKLKEIKNGRL
Sbjct: 174 MDFKSPGSQAQEGTFFGLEAALEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRL 233

Query: 61  AMVAMLGIFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTLSSSSP 105
           AMVAM+GIFVQAYVTH GPIDNLVEHLSNPWHKTIIQTLSSSSP
Sbjct: 234 AMVAMVGIFVQAYVTHAGPIDNLVEHLSNPWHKTIIQTLSSSSP 277

[Close]

BLAST of Cmc03g0084311 vs. NCBI nr
Match: XP_022144176.1 (photosystem I chlorophyll a/b-binding protein 5, chloroplastic isoform X2 [Momordica charantia])

HSP 1 Score: 212.6 bits (540), Expect = 1.6e-51
Identity = 99/104 (95.19%), Postives = 102/104 (98.08%), Query Frame = 0


Query: 1   MDFKSPGSQAQEGTFFGLEAAFEGLEPGYPGGPLLNPLGIAKDVKNAHDWKLKEIKNGRL 60
           MDFKSPGSQAQEGTFFGLEAA EGLEPGYPGGPLLNPLG+AKD+KNAHDWKLKEIKNGRL
Sbjct: 170 MDFKSPGSQAQEGTFFGLEAALEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRL 229

Query: 61  AMVAMLGIFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTLSSSSP 105
           AMVAM+GIFVQAYVTH GPIDNLVEHLSNPWHKTIIQTLSSSSP
Sbjct: 230 AMVAMVGIFVQAYVTHAGPIDNLVEHLSNPWHKTIIQTLSSSSP 273

[Close]

BLAST of Cmc03g0084311 vs. NCBI nr
Match: XP_038886221.1 (photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Benincasa hispida])

HSP 1 Score: 211.5 bits (537), Expect = 3.6e-51
Identity = 99/101 (98.02%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MDFKSPGSQAQEGTFFGLEAAFEGLEPGYPGGPLLNPLGIAKDVKNAHDWKLKEIKNGRL 60
           MDFKSPGSQAQEGTFFGLEAAFEGLEPGYPGGPLLNPLGIAKD+KNAH+WKLKEIKNGRL
Sbjct: 162 MDFKSPGSQAQEGTFFGLEAAFEGLEPGYPGGPLLNPLGIAKDIKNAHEWKLKEIKNGRL 221

Query: 61  AMVAMLGIFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTLSS 102
           AMVAMLGIFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTLSS
Sbjct: 222 AMVAMLGIFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTLSS 262

[Close]

BLAST of Cmc03g0084311 vs. ExPASy Swiss-Prot
Match: Q9C639 (Photosystem I chlorophyll a/b-binding protein 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA5 PE=1 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 8.6e-48
Identity = 91/104 (87.50%), Postives = 98/104 (94.23%), Query Frame = 0


Query: 1   MDFKSPGSQAQEGT-FFGLEAAFEGLEPGYPGGPLLNPLGIAKDVKNAHDWKLKEIKNGR 60
           MDF SPGSQA+EG+ FFGLEAA EGLEPGYPGGPLLNPLG+AKDV+NAHDWKLKEIKNGR
Sbjct: 152 MDFVSPGSQAKEGSFFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGR 211

Query: 61  LAMVAMLGIFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTLSSSS 104
           LAM+AMLG FVQA VTHTGPIDNLVEHLSNPWHKTIIQTL +S+
Sbjct: 212 LAMMAMLGFFVQASVTHTGPIDNLVEHLSNPWHKTIIQTLFTST 255

[Close]

BLAST of Cmc03g0084311 vs. ExPASy Swiss-Prot
Match: P27522 (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAB8 PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 6.2e-22
Identity = 51/99 (51.52%), Postives = 68/99 (68.69%), Query Frame = 0


Query: 2   DFKSPGSQAQEGTFFGLEAAFEGL-EPGYPGGPLLNPLGIAKDVKNAHDWKLKEIKNGRL 61
           D+  PGS  ++  F GLE    G  +P YPGGPL NPLG  KD K+  + KLKEIKNGRL
Sbjct: 173 DWAKPGSMGKQ-YFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRL 232

Query: 62  AMVAMLGIFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTL 100
           AM+A+LG F+QA VT  GP  NL++HL++P +  ++ +L
Sbjct: 233 AMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNVLTSL 270

[Close]

BLAST of Cmc03g0084311 vs. ExPASy Swiss-Prot
Match: Q32904 (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum OX=3888 GN=lhca3 PE=1 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 5.2e-21
Identity = 48/99 (48.48%), Postives = 66/99 (66.67%), Query Frame = 0


Query: 2   DFKSPGSQAQEGTFFGLEAAFEGL-EPGYPGGPLLNPLGIAKDVKNAHDWKLKEIKNGRL 61
           D+  PGS  ++  F GLE  F G   P YPGGP  NPLG  KD K+  + KLKE+KNGRL
Sbjct: 175 DWAKPGSMGKQ-YFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRL 234

Query: 62  AMVAMLGIFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTL 100
           AM+A+LG F+Q  VT  GP  NL++H+++P +  ++ +L
Sbjct: 235 AMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNNVLTSL 272

[Close]

BLAST of Cmc03g0084311 vs. ExPASy Swiss-Prot
Match: Q9SY97 (Photosystem I chlorophyll a/b-binding protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA3 PE=1 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 8.9e-21
Identity = 48/99 (48.48%), Postives = 66/99 (66.67%), Query Frame = 0


Query: 2   DFKSPGSQAQEGTFFGLEAAFEGL-EPGYPGGPLLNPLGIAKDVKNAHDWKLKEIKNGRL 61
           D+ +PGS  ++  F GLE    G   P YPGGP  NPLG  KD K+  + KLKE+KNGRL
Sbjct: 173 DWYNPGSMGKQ-YFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRL 232

Query: 62  AMVAMLGIFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTL 100
           AM+A+LG F+Q  VT  GP  NL++HL++P +  ++ +L
Sbjct: 233 AMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNNVLTSL 270

[Close]

BLAST of Cmc03g0084311 vs. ExPASy Swiss-Prot
Match: Q9SQL2 (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum OX=3888 GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.7e-17
Identity = 50/103 (48.54%), Postives = 64/103 (62.14%), Query Frame = 0


Query: 2   DFKSPGSQAQEGTF--FGLEAAFEGLEPGYPGGPLLNPLGIAKDVKNAHDWKLKEIKNGR 61
           D K+PGS  Q+  F  + L A     E GYPGG + NPL  A  +    + K KEI NGR
Sbjct: 159 DIKNPGSVNQDPIFKQYSLPAG----EVGYPGG-IFNPLNFAPTL----EAKEKEIANGR 218

Query: 62  LAMVAMLGIFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTLSSS 103
           LAM+A LG  +Q  VT  GP DNL++H+S+PWH TI+QTL  +
Sbjct: 219 LAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTLGGN 252

[Close]

BLAST of Cmc03g0084311 vs. ExPASy TrEMBL
Match: A0A5A7UY53 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00360 PE=3 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 8.3e-54
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MDFKSPGSQAQEGTFFGLEAAFEGLEPGYPGGPLLNPLGIAKDVKNAHDWKLKEIKNGRL 60
           MDFKSPGSQAQEGTFFGLEAAFEGLEPGYPGGPLLNPLGIAKDVKNAHDWKLKEIKNGRL
Sbjct: 157 MDFKSPGSQAQEGTFFGLEAAFEGLEPGYPGGPLLNPLGIAKDVKNAHDWKLKEIKNGRL 216

Query: 61  AMVAMLGIFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTLSSSSP 105
           AMVAMLGIFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTLSSSSP
Sbjct: 217 AMVAMLGIFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTLSSSSP 260

[Close]

BLAST of Cmc03g0084311 vs. ExPASy TrEMBL
Match: A0A1S3BBL1 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103487892 PE=3 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 8.3e-54
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MDFKSPGSQAQEGTFFGLEAAFEGLEPGYPGGPLLNPLGIAKDVKNAHDWKLKEIKNGRL 60
           MDFKSPGSQAQEGTFFGLEAAFEGLEPGYPGGPLLNPLGIAKDVKNAHDWKLKEIKNGRL
Sbjct: 157 MDFKSPGSQAQEGTFFGLEAAFEGLEPGYPGGPLLNPLGIAKDVKNAHDWKLKEIKNGRL 216

Query: 61  AMVAMLGIFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTLSSSSP 105
           AMVAMLGIFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTLSSSSP
Sbjct: 217 AMVAMLGIFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTLSSSSP 260

[Close]

BLAST of Cmc03g0084311 vs. ExPASy TrEMBL
Match: A0A0A0LRB4 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_2G357290 PE=3 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 3.2e-53
Identity = 102/104 (98.08%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MDFKSPGSQAQEGTFFGLEAAFEGLEPGYPGGPLLNPLGIAKDVKNAHDWKLKEIKNGRL 60
           MDFKSPGSQAQEGTFFGLEAAF+GLEPGYPGGPLLNPLGIAKD+KNAHDWKLKEIKNGRL
Sbjct: 156 MDFKSPGSQAQEGTFFGLEAAFKGLEPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRL 215

Query: 61  AMVAMLGIFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTLSSSSP 105
           AMVAMLGIFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTLSSSSP
Sbjct: 216 AMVAMLGIFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTLSSSSP 259

[Close]

BLAST of Cmc03g0084311 vs. ExPASy TrEMBL
Match: A0A6J1CQX2 (Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111013928 PE=3 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 7.8e-52
Identity = 99/104 (95.19%), Postives = 102/104 (98.08%), Query Frame = 0


Query: 1   MDFKSPGSQAQEGTFFGLEAAFEGLEPGYPGGPLLNPLGIAKDVKNAHDWKLKEIKNGRL 60
           MDFKSPGSQAQEGTFFGLEAA EGLEPGYPGGPLLNPLG+AKD+KNAHDWKLKEIKNGRL
Sbjct: 174 MDFKSPGSQAQEGTFFGLEAALEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRL 233

Query: 61  AMVAMLGIFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTLSSSSP 105
           AMVAM+GIFVQAYVTH GPIDNLVEHLSNPWHKTIIQTLSSSSP
Sbjct: 234 AMVAMVGIFVQAYVTHAGPIDNLVEHLSNPWHKTIIQTLSSSSP 277

[Close]

BLAST of Cmc03g0084311 vs. ExPASy TrEMBL
Match: A0A6J1CSJ3 (Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111013928 PE=3 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 7.8e-52
Identity = 99/104 (95.19%), Postives = 102/104 (98.08%), Query Frame = 0


Query: 1   MDFKSPGSQAQEGTFFGLEAAFEGLEPGYPGGPLLNPLGIAKDVKNAHDWKLKEIKNGRL 60
           MDFKSPGSQAQEGTFFGLEAA EGLEPGYPGGPLLNPLG+AKD+KNAHDWKLKEIKNGRL
Sbjct: 170 MDFKSPGSQAQEGTFFGLEAALEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRL 229

Query: 61  AMVAMLGIFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTLSSSSP 105
           AMVAM+GIFVQAYVTH GPIDNLVEHLSNPWHKTIIQTLSSSSP
Sbjct: 230 AMVAMVGIFVQAYVTHAGPIDNLVEHLSNPWHKTIIQTLSSSSP 273

[Close]

BLAST of Cmc03g0084311 vs. TAIR 10
Match: AT1G45474.1 (photosystem I light harvesting complex gene 5 )

HSP 1 Score: 190.7 bits (483), Expect = 6.1e-49
Identity = 91/104 (87.50%), Postives = 98/104 (94.23%), Query Frame = 0


Query: 1   MDFKSPGSQAQEGT-FFGLEAAFEGLEPGYPGGPLLNPLGIAKDVKNAHDWKLKEIKNGR 60
           MDF SPGSQA+EG+ FFGLEAA EGLEPGYPGGPLLNPLG+AKDV+NAHDWKLKEIKNGR
Sbjct: 152 MDFVSPGSQAKEGSFFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGR 211

Query: 61  LAMVAMLGIFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTLSSSS 104
           LAM+AMLG FVQA VTHTGPIDNLVEHLSNPWHKTIIQTL +S+
Sbjct: 212 LAMMAMLGFFVQASVTHTGPIDNLVEHLSNPWHKTIIQTLFTST 255

[Close]

BLAST of Cmc03g0084311 vs. TAIR 10
Match: AT1G45474.2 (photosystem I light harvesting complex gene 5 )

HSP 1 Score: 190.7 bits (483), Expect = 6.1e-49
Identity = 91/104 (87.50%), Postives = 98/104 (94.23%), Query Frame = 0


Query: 1   MDFKSPGSQAQEGT-FFGLEAAFEGLEPGYPGGPLLNPLGIAKDVKNAHDWKLKEIKNGR 60
           MDF SPGSQA+EG+ FFGLEAA EGLEPGYPGGPLLNPLG+AKDV+NAHDWKLKEIKNGR
Sbjct: 152 MDFVSPGSQAKEGSFFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGR 211

Query: 61  LAMVAMLGIFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTLSSSS 104
           LAM+AMLG FVQA VTHTGPIDNLVEHLSNPWHKTIIQTL +S+
Sbjct: 212 LAMMAMLGFFVQASVTHTGPIDNLVEHLSNPWHKTIIQTLFTST 255

[Close]

BLAST of Cmc03g0084311 vs. TAIR 10
Match: AT1G61520.1 (photosystem I light harvesting complex gene 3 )

HSP 1 Score: 100.9 bits (250), Expect = 6.3e-22
Identity = 48/99 (48.48%), Postives = 66/99 (66.67%), Query Frame = 0


Query: 2   DFKSPGSQAQEGTFFGLEAAFEGL-EPGYPGGPLLNPLGIAKDVKNAHDWKLKEIKNGRL 61
           D+ +PGS  ++  F GLE    G   P YPGGP  NPLG  KD K+  + KLKE+KNGRL
Sbjct: 173 DWYNPGSMGKQ-YFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRL 232

Query: 62  AMVAMLGIFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTL 100
           AM+A+LG F+Q  VT  GP  NL++HL++P +  ++ +L
Sbjct: 233 AMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNNVLTSL 270

[Close]

BLAST of Cmc03g0084311 vs. TAIR 10
Match: AT1G61520.2 (photosystem I light harvesting complex gene 3 )

HSP 1 Score: 100.9 bits (250), Expect = 6.3e-22
Identity = 48/99 (48.48%), Postives = 66/99 (66.67%), Query Frame = 0


Query: 2   DFKSPGSQAQEGTFFGLEAAFEGL-EPGYPGGPLLNPLGIAKDVKNAHDWKLKEIKNGRL 61
           D+ +PGS  ++  F GLE    G   P YPGGP  NPLG  KD K+  + KLKE+KNGRL
Sbjct: 118 DWYNPGSMGKQ-YFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRL 177

Query: 62  AMVAMLGIFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTL 100
           AM+A+LG F+Q  VT  GP  NL++HL++P +  ++ +L
Sbjct: 178 AMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNNVLTSL 215

[Close]

BLAST of Cmc03g0084311 vs. TAIR 10
Match: AT1G61520.3 (photosystem I light harvesting complex gene 3 )

HSP 1 Score: 100.9 bits (250), Expect = 6.3e-22
Identity = 48/99 (48.48%), Postives = 66/99 (66.67%), Query Frame = 0


Query: 2   DFKSPGSQAQEGTFFGLEAAFEGL-EPGYPGGPLLNPLGIAKDVKNAHDWKLKEIKNGRL 61
           D+ +PGS  ++  F GLE    G   P YPGGP  NPLG  KD K+  + KLKE+KNGRL
Sbjct: 173 DWYNPGSMGKQ-YFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRL 232

Query: 62  AMVAMLGIFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTL 100
           AM+A+LG F+Q  VT  GP  NL++HL++P +  ++ +L
Sbjct: 233 AMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNNVLTSL 270

The following BLAST results are available for this feature:

BLAST of Cmc03g0084311 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008444623.1	1.7e-53	100.00	PREDICTED: photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucum...	[more]
XP_004150882.1	6.5e-53	98.08	photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucumis sativus]...	[more]
XP_022144175.1	1.6e-51	95.19	photosystem I chlorophyll a/b-binding protein 5, chloroplastic isoform X1 [Momor...	[more]
XP_022144176.1	1.6e-51	95.19	photosystem I chlorophyll a/b-binding protein 5, chloroplastic isoform X2 [Momor...	[more]
XP_038886221.1	3.6e-51	98.02	photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Benincasa hispid...	[more]

BLAST of Cmc03g0084311 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C639	8.6e-48	87.50	Photosystem I chlorophyll a/b-binding protein 5, chloroplastic OS=Arabidopsis th...	[more]
P27522	6.2e-22	51.52	Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum OX=4081...	[more]
Q32904	5.2e-21	48.48	Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum OX=3888 GN=lhc...	[more]
Q9SY97	8.9e-21	48.48	Photosystem I chlorophyll a/b-binding protein 3-1, chloroplastic OS=Arabidopsis ...	[more]
Q9SQL2	2.7e-17	48.54	Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum OX=3888 GN=lh...	[more]

BLAST of Cmc03g0084311 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UY53	8.3e-54	100.00	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3BBL1	8.3e-54	100.00	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A0A0LRB4	3.2e-53	98.08	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa...	[more]
A0A6J1CQX2	7.8e-52	95.19	Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN...	[more]
A0A6J1CSJ3	7.8e-52	95.19	Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN...	[more]

BLAST of Cmc03g0084311 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G45474.1	6.1e-49	87.50	photosystem I light harvesting complex gene 5	[more]
AT1G45474.2	6.1e-49	87.50	photosystem I light harvesting complex gene 5	[more]
AT1G61520.1	6.3e-22	48.48	photosystem I light harvesting complex gene 3	[more]
AT1G61520.2	6.3e-22	48.48	photosystem I light harvesting complex gene 3	[more]
AT1G61520.3	6.3e-22	48.48	photosystem I light harvesting complex gene 3	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 5..103 e-value: 3.0E-30 score: 107.5
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 15..73 e-value: 2.4E-15 score: 57.4
None	No IPR available	PANTHER	PTHR21649:SF67	PHOTOSYSTEM I CHLOROPHYLL A/B-BINDING PROTEIN 5, CHLOROPLASTIC	coord: 1..101
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 20..101
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 1..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc03g0084311.1	Cmc03g0084311.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009768	photosynthesis, light harvesting in photosystem I
biological_process	GO:0009409	response to cold
biological_process	GO:0009644	response to high light intensity
biological_process	GO:0009645	response to low light intensity stimulus
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009782	photosystem I antenna complex
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0031409	pigment binding
molecular_function	GO:0042803	protein homodimerization activity