Cmc03g0070031 (gene) Melon (Charmono) v1.1

Overview
NameCmc03g0070031
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
LocationCMiso1.1chr03: 15683599 .. 15684249 (+)
RNA-Seq ExpressionCmc03g0070031
SyntenyCmc03g0070031
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGATTTCGATGAAATTTTAGGCATGGATTGGTTGTCAACTAACCATGCAACCATAGACTGTTTTAATAAGGAAGTAGTCTTTAACCCTCCTTCCGGGGATAAGTTTAAGTTTAGAGGAGCAGGCATGGTAGGTATACCCAAGGTCATCTCAGCAATGAAGGCGAGTAAGCTACTTAGCCAGGGTACTTGGGGTATCTTGGCGAACGTAGTAGATATGGCAGAACCAGAAGTTTCCCTATCTTCCGAACCAGTAGTAAGGGAGTACCCTGACGTTTTCCCCGACGAACTCCCAGGACTTCCGCCTCCCAGGGAGGTAGACTTCGCCATTGAGTTAGAGCCCGGCACCGCCCCTATCTCTAGAGCTCCTTACAGAATGGCCCCAGCCGAGTTAAAGGAGTTGAAAGTCCAGTTACAGGAGCTGTTGGACAAGGGCTTTATCCGGCCCAGTGTATCACCTTGGGGAGCCCCAGTGTTGTTCGTGAAGAAGAAGGATGGGTCGATGCGCCTTTGCATTGACTACCGAGAATTGAACAAGGTGACAGTTAAGAACCGCTACCCCTTACCCAGAATCGAGGACCTGTTCGACCAGTTACAGGGGCCACCGTCTTTTCCAAGATCGACCTGCGATCAGGCTATCACCAGTTGA

mRNA sequence

ATGCAAGATTTCGATGAAATTTTAGGCATGGATTGGTTGTCAACTAACCATGCAACCATAGACTGTTTTAATAAGGAAGTAGTCTTTAACCCTCCTTCCGGGGATAAGTTTAAGTTTAGAGGAGCAGGCATGGTAGGTATACCCAAGGTCATCTCAGCAATGAAGGCGAGTAAGCTACTTAGCCAGGGTACTTGGGGTATCTTGGCGAACGTAGTAGATATGGCAGAACCAGAAGTTTCCCTATCTTCCGAACCAGTAGTAAGGGAGTACCCTGACGTTTTCCCCGACGAACTCCCAGGACTTCCGCCTCCCAGGGAGGTAGACTTCGCCATTGAGTTAGAGCCCGGCACCGCCCCTATCTCTAGAGCTCCTTACAGAATGGCCCCAGCCGAGTTAAAGGAGTTGAAAGTCCAGTTACAGGAGCTGTTGGACAAGGGCTTTATCCGGCCCAGTGTATCACCTTGGGGAGCCCCAGTGTTGTTCGTGAAGAAGAAGGATGGGTCGATGCGCCTTTGCATTGACTACCGAGAATTGAACAAGGTGACAGTTAAGAACCGCTACCCCTTACCCAGAATCGAGGACCTGTTCGACCAGTTACAGGGGCCACCGTCTTTTCCAAGATCGACCTGCGATCAGGCTATCACCAGTTGA

Coding sequence (CDS)

ATGCAAGATTTCGATGAAATTTTAGGCATGGATTGGTTGTCAACTAACCATGCAACCATAGACTGTTTTAATAAGGAAGTAGTCTTTAACCCTCCTTCCGGGGATAAGTTTAAGTTTAGAGGAGCAGGCATGGTAGGTATACCCAAGGTCATCTCAGCAATGAAGGCGAGTAAGCTACTTAGCCAGGGTACTTGGGGTATCTTGGCGAACGTAGTAGATATGGCAGAACCAGAAGTTTCCCTATCTTCCGAACCAGTAGTAAGGGAGTACCCTGACGTTTTCCCCGACGAACTCCCAGGACTTCCGCCTCCCAGGGAGGTAGACTTCGCCATTGAGTTAGAGCCCGGCACCGCCCCTATCTCTAGAGCTCCTTACAGAATGGCCCCAGCCGAGTTAAAGGAGTTGAAAGTCCAGTTACAGGAGCTGTTGGACAAGGGCTTTATCCGGCCCAGTGTATCACCTTGGGGAGCCCCAGTGTTGTTCGTGAAGAAGAAGGATGGGTCGATGCGCCTTTGCATTGACTACCGAGAATTGAACAAGGTGACAGTTAAGAACCGCTACCCCTTACCCAGAATCGAGGACCTGTTCGACCAGTTACAGGGGCCACCGTCTTTTCCAAGATCGACCTGCGATCAGGCTATCACCAGTTGA

Protein sequence

MQDFDEILGMDWLSTNHATIDCFNKEVVFNPPSGDKFKFRGAGMVGIPKVISAMKASKLLSQGTWGILANVVDMAEPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIEDLFDQLQGPPSFPRSTCDQAITS
Homology
[Close]
BLAST of Cmc03g0070031 vs. NCBI nr
Match: KAA0025917.1 (pol protein [Cucumis melo var. makuwa] >KAA0042949.1 pol protein [Cucumis melo var. makuwa] >KAA0048622.1 pol protein [Cucumis melo var. makuwa] >KAA0056306.1 pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 410.2 bits (1053), Expect = 1.1e-110
Identity = 201/207 (97.10%), Postives = 202/207 (97.58%), Query Frame = 0 

Query: 1   MQDFDEILGMDWLSTNHATIDCFNKEVVFNPPSGDKFKFRGAGMVGIPKVISAMKASKLL 60
           MQDFD ILGMDWLSTNHATIDCFNKEVVFNPPSGDKFKFRGAGMVGIPKVISAMKASKLL
Sbjct: 490 MQDFDVILGMDWLSTNHATIDCFNKEVVFNPPSGDKFKFRGAGMVGIPKVISAMKASKLL 549

Query: 61  SQGTWGILANVVDMAEPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPI 120
           SQGTWGILANVVDMAEPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPI
Sbjct: 550 SQGTWGILANVVDMAEPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPI 609

Query: 121 SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK 180
           SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK
Sbjct: 610 SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK 669

Query: 181 VTVKNRYPLPRIEDLFDQLQGPPSFPR 208
           VTVKNRYPLPRIEDLFDQLQG   F +
Sbjct: 670 VTVKNRYPLPRIEDLFDQLQGATVFSK 696

[Close]
BLAST of Cmc03g0070031 vs. NCBI nr
Match: KAA0025998.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 389.0 bits (998), Expect = 2.6e-104
Identity = 191/207 (92.27%), Postives = 195/207 (94.20%), Query Frame = 0 

Query: 1   MQDFDEILGMDWLSTNHATIDCFNKEVVFNPPSGDKFKFRGAGMVGIPKVISAMKASKLL 60
           MQDFD ILGMDWLS NHA IDCF KEVVFNPPSG  FKFRGAGMV IPKVISAMKASKLL
Sbjct: 473 MQDFDVILGMDWLSANHANIDCFGKEVVFNPPSGASFKFRGAGMVCIPKVISAMKASKLL 532

Query: 61  SQGTWGILANVVDMAEPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPI 120
           SQGTWGILA+VVD+ EPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPI
Sbjct: 533 SQGTWGILASVVDVREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPI 592

Query: 121 SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK 180
           SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK
Sbjct: 593 SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK 652

Query: 181 VTVKNRYPLPRIEDLFDQLQGPPSFPR 208
           VTVKNRYPLPRI+DLFDQLQG   F +
Sbjct: 653 VTVKNRYPLPRIDDLFDQLQGATVFSK 679

[Close]
BLAST of Cmc03g0070031 vs. NCBI nr
Match: KAA0059723.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 389.0 bits (998), Expect = 2.6e-104
Identity = 191/207 (92.27%), Postives = 195/207 (94.20%), Query Frame = 0 

Query: 1   MQDFDEILGMDWLSTNHATIDCFNKEVVFNPPSGDKFKFRGAGMVGIPKVISAMKASKLL 60
           MQDFD ILGMDWLS NHA IDCF KEVVFNPPSG  FKFRGAGMV IPKVISAMKASKLL
Sbjct: 447 MQDFDVILGMDWLSANHANIDCFGKEVVFNPPSGASFKFRGAGMVCIPKVISAMKASKLL 506

Query: 61  SQGTWGILANVVDMAEPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPI 120
           SQGTWGILA+VVD+ EPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPI
Sbjct: 507 SQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPI 566

Query: 121 SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK 180
           SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK
Sbjct: 567 SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK 626

Query: 181 VTVKNRYPLPRIEDLFDQLQGPPSFPR 208
           VTVKNRYPLPRI+DLFDQLQG   F +
Sbjct: 627 VTVKNRYPLPRIDDLFDQLQGATVFSK 653

[Close]
BLAST of Cmc03g0070031 vs. NCBI nr
Match: TYK01306.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 389.0 bits (998), Expect = 2.6e-104
Identity = 191/207 (92.27%), Postives = 195/207 (94.20%), Query Frame = 0 

Query: 1   MQDFDEILGMDWLSTNHATIDCFNKEVVFNPPSGDKFKFRGAGMVGIPKVISAMKASKLL 60
           MQDFD ILGMDWLS NHA IDCF KEVVFNPPSG  FKFRGAGMV IPKVISAMKASKLL
Sbjct: 433 MQDFDVILGMDWLSANHANIDCFGKEVVFNPPSGASFKFRGAGMVCIPKVISAMKASKLL 492

Query: 61  SQGTWGILANVVDMAEPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPI 120
           SQGTWGILA+VVD+ EPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPI
Sbjct: 493 SQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPI 552

Query: 121 SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK 180
           SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK
Sbjct: 553 SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK 612

Query: 181 VTVKNRYPLPRIEDLFDQLQGPPSFPR 208
           VTVKNRYPLPRI+DLFDQLQG   F +
Sbjct: 613 VTVKNRYPLPRIDDLFDQLQGATVFSK 639

[Close]
BLAST of Cmc03g0070031 vs. NCBI nr
Match: KAA0060745.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 387.9 bits (995), Expect = 5.8e-104
Identity = 190/207 (91.79%), Postives = 195/207 (94.20%), Query Frame = 0 

Query: 1   MQDFDEILGMDWLSTNHATIDCFNKEVVFNPPSGDKFKFRGAGMVGIPKVISAMKASKLL 60
           MQDFD ILGMDWLS NHA IDCF KEVVFNPPSG  FKFRGAGMV IPKVISAMKASKLL
Sbjct: 445 MQDFDVILGMDWLSANHANIDCFGKEVVFNPPSGASFKFRGAGMVCIPKVISAMKASKLL 504

Query: 61  SQGTWGILANVVDMAEPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPI 120
           SQGTWGILA+VVD+ EPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPI
Sbjct: 505 SQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPI 564

Query: 121 SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK 180
           SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK
Sbjct: 565 SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK 624

Query: 181 VTVKNRYPLPRIEDLFDQLQGPPSFPR 208
           VTVKNRYPLP+I+DLFDQLQG   F +
Sbjct: 625 VTVKNRYPLPKIDDLFDQLQGATVFSK 651

[Close]
BLAST of Cmc03g0070031 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 90.9 bits (224), Expect = 1.9e-17
Identity = 52/159 (32.70%), Postives = 86/159 (54.09%), Query Frame = 0 

Query: 55  KASKLLSQGTWGILANVVDMAEPEVSLSSEP---------VVREYPDVFPDELPGLPPPR 114
           +AS L   G +  + + +   EP  +  S           + ++Y ++  ++LP  P P 
Sbjct: 520 EASILEEDGKYSNVVSTIQSVEPNATDHSNKDTFCTLPVWLQQKYREIIRNDLP--PRPA 579

Query: 115 EVD-----FAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVL 174
           +++       IE++PG       PY +     +E+   +Q+LLD  FI PS SP  +PV+
Sbjct: 580 DINNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVV 639

Query: 175 FVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIEDLFDQL 200
            V KKDG+ RLC+DYR LNK T+ + +PLPRI++L  ++
Sbjct: 640 LVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRI 676

[Close]
BLAST of Cmc03g0070031 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 90.9 bits (224), Expect = 1.9e-17
Identity = 52/159 (32.70%), Postives = 86/159 (54.09%), Query Frame = 0 

Query: 55  KASKLLSQGTWGILANVVDMAEPEVSLSSEP---------VVREYPDVFPDELPGLPPPR 114
           +AS L   G +  + + +   EP  +  S           + ++Y ++  ++LP  P P 
Sbjct: 546 EASILEEDGKYSNVVSTIQSVEPNATDHSNKDTFCTLPVWLQQKYREIIRNDLP--PRPA 605

Query: 115 EVD-----FAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVL 174
           +++       IE++PG       PY +     +E+   +Q+LLD  FI PS SP  +PV+
Sbjct: 606 DINNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVV 665

Query: 175 FVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIEDLFDQL 200
            V KKDG+ RLC+DYR LNK T+ + +PLPRI++L  ++
Sbjct: 666 LVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRI 702

[Close]
BLAST of Cmc03g0070031 vs. ExPASy Swiss-Prot
Match: P10394 (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 6.4e-13
Identity = 42/132 (31.82%), Postives = 71/132 (53.79%), Query Frame = 0 

Query: 88  REYPDVFPDELPGLPPPREVDFAIELEPGTA--------------PISRAPYRMAPAELK 147
           + +P++F  +L  +       FA+E EP T               P+    YR   ++++
Sbjct: 269 KNFPELFKSQLENICSEYIDIFALESEPITVNNLYKQQLRLKDDEPVYTKNYRSPHSQVE 328

Query: 148 ELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDG------SMRLCIDYRELNKVTVKNRY 200
           E++ Q+Q+L+    + PSVS + +P+L V KK          RL IDYR++NK  + +++
Sbjct: 329 EIQAQVQKLIKDKIVEPSVSQYNSPLLLVPKKSSPNSDKKKWRLVIDYRQINKKLLADKF 388

[Close]
BLAST of Cmc03g0070031 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 5.4e-12
Identity = 44/142 (30.99%), Postives = 77/142 (54.23%), Query Frame = 0 

Query: 68  LANVVDMAEPEVSLSSEPVVREYPDVFPD-ELPGLPPP-REVDFAIELEPGTAPISRAPY 127
           ++N+V   EPE+      + +E+ D+  +     LP P + ++F +EL      +    Y
Sbjct: 365 VSNIV--KEPEL----PDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRNY 424

Query: 128 RMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKN 187
            + P +++ +  ++ + L  G IR S +    PV+FV KK+G++R+ +DY+ LNK    N
Sbjct: 425 PLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPN 484

Query: 188 RYPLPRIEDLFDQLQGPPSFPR 208
            YPLP IE L  ++QG   F +
Sbjct: 485 IYPLPLIEQLLAKIQGSTIFTK 500

[Close]
BLAST of Cmc03g0070031 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 5.4e-12
Identity = 44/142 (30.99%), Postives = 77/142 (54.23%), Query Frame = 0 

Query: 68  LANVVDMAEPEVSLSSEPVVREYPDVFPD-ELPGLPPP-REVDFAIELEPGTAPISRAPY 127
           ++N+V   EPE+      + +E+ D+  +     LP P + ++F +EL      +    Y
Sbjct: 365 VSNIV--KEPEL----PDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRNY 424

Query: 128 RMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKN 187
            + P +++ +  ++ + L  G IR S +    PV+FV KK+G++R+ +DY+ LNK    N
Sbjct: 425 PLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPN 484

Query: 188 RYPLPRIEDLFDQLQGPPSFPR 208
            YPLP IE L  ++QG   F +
Sbjct: 485 IYPLPLIEQLLAKIQGSTIFTK 500

[Close]
BLAST of Cmc03g0070031 vs. ExPASy TrEMBL
Match: A0A5A7TP01 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1484G00070 PE=4 SV=1)

HSP 1 Score: 410.2 bits (1053), Expect = 5.3e-111
Identity = 201/207 (97.10%), Postives = 202/207 (97.58%), Query Frame = 0 

Query: 1   MQDFDEILGMDWLSTNHATIDCFNKEVVFNPPSGDKFKFRGAGMVGIPKVISAMKASKLL 60
           MQDFD ILGMDWLSTNHATIDCFNKEVVFNPPSGDKFKFRGAGMVGIPKVISAMKASKLL
Sbjct: 490 MQDFDVILGMDWLSTNHATIDCFNKEVVFNPPSGDKFKFRGAGMVGIPKVISAMKASKLL 549

Query: 61  SQGTWGILANVVDMAEPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPI 120
           SQGTWGILANVVDMAEPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPI
Sbjct: 550 SQGTWGILANVVDMAEPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPI 609

Query: 121 SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK 180
           SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK
Sbjct: 610 SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK 669

Query: 181 VTVKNRYPLPRIEDLFDQLQGPPSFPR 208
           VTVKNRYPLPRIEDLFDQLQG   F +
Sbjct: 670 VTVKNRYPLPRIEDLFDQLQGATVFSK 696

[Close]
BLAST of Cmc03g0070031 vs. ExPASy TrEMBL
Match: A0A5A7SIJ5 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G003210 PE=4 SV=1)

HSP 1 Score: 389.0 bits (998), Expect = 1.3e-104
Identity = 191/207 (92.27%), Postives = 195/207 (94.20%), Query Frame = 0 

Query: 1   MQDFDEILGMDWLSTNHATIDCFNKEVVFNPPSGDKFKFRGAGMVGIPKVISAMKASKLL 60
           MQDFD ILGMDWLS NHA IDCF KEVVFNPPSG  FKFRGAGMV IPKVISAMKASKLL
Sbjct: 473 MQDFDVILGMDWLSANHANIDCFGKEVVFNPPSGASFKFRGAGMVCIPKVISAMKASKLL 532

Query: 61  SQGTWGILANVVDMAEPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPI 120
           SQGTWGILA+VVD+ EPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPI
Sbjct: 533 SQGTWGILASVVDVREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPI 592

Query: 121 SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK 180
           SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK
Sbjct: 593 SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK 652

Query: 181 VTVKNRYPLPRIEDLFDQLQGPPSFPR 208
           VTVKNRYPLPRI+DLFDQLQG   F +
Sbjct: 653 VTVKNRYPLPRIDDLFDQLQGATVFSK 679

[Close]
BLAST of Cmc03g0070031 vs. ExPASy TrEMBL
Match: A0A5A7UUX8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1395G00080 PE=4 SV=1)

HSP 1 Score: 389.0 bits (998), Expect = 1.3e-104
Identity = 191/207 (92.27%), Postives = 195/207 (94.20%), Query Frame = 0 

Query: 1   MQDFDEILGMDWLSTNHATIDCFNKEVVFNPPSGDKFKFRGAGMVGIPKVISAMKASKLL 60
           MQDFD ILGMDWLS NHA IDCF KEVVFNPPSG  FKFRGAGMV IPKVISAMKASKLL
Sbjct: 447 MQDFDVILGMDWLSANHANIDCFGKEVVFNPPSGASFKFRGAGMVCIPKVISAMKASKLL 506

Query: 61  SQGTWGILANVVDMAEPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPI 120
           SQGTWGILA+VVD+ EPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPI
Sbjct: 507 SQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPI 566

Query: 121 SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK 180
           SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK
Sbjct: 567 SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK 626

Query: 181 VTVKNRYPLPRIEDLFDQLQGPPSFPR 208
           VTVKNRYPLPRI+DLFDQLQG   F +
Sbjct: 627 VTVKNRYPLPRIDDLFDQLQGATVFSK 653

[Close]
BLAST of Cmc03g0070031 vs. ExPASy TrEMBL
Match: A0A5D3BSV9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold827G00060 PE=4 SV=1)

HSP 1 Score: 389.0 bits (998), Expect = 1.3e-104
Identity = 191/207 (92.27%), Postives = 195/207 (94.20%), Query Frame = 0 

Query: 1   MQDFDEILGMDWLSTNHATIDCFNKEVVFNPPSGDKFKFRGAGMVGIPKVISAMKASKLL 60
           MQDFD ILGMDWLS NHA IDCF KEVVFNPPSG  FKFRGAGMV IPKVISAMKASKLL
Sbjct: 433 MQDFDVILGMDWLSANHANIDCFGKEVVFNPPSGASFKFRGAGMVCIPKVISAMKASKLL 492

Query: 61  SQGTWGILANVVDMAEPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPI 120
           SQGTWGILA+VVD+ EPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPI
Sbjct: 493 SQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPI 552

Query: 121 SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK 180
           SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK
Sbjct: 553 SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK 612

Query: 181 VTVKNRYPLPRIEDLFDQLQGPPSFPR 208
           VTVKNRYPLPRI+DLFDQLQG   F +
Sbjct: 613 VTVKNRYPLPRIDDLFDQLQGATVFSK 639

[Close]
BLAST of Cmc03g0070031 vs. ExPASy TrEMBL
Match: A0A5A7V4E4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold72G00400 PE=4 SV=1)

HSP 1 Score: 387.9 bits (995), Expect = 2.8e-104
Identity = 190/207 (91.79%), Postives = 195/207 (94.20%), Query Frame = 0 

Query: 1   MQDFDEILGMDWLSTNHATIDCFNKEVVFNPPSGDKFKFRGAGMVGIPKVISAMKASKLL 60
           MQDFD ILGMDWLS NHA IDCF KEVVFNPPSG  FKFRGAGMV IPKVISAMKASKLL
Sbjct: 445 MQDFDVILGMDWLSANHANIDCFGKEVVFNPPSGASFKFRGAGMVCIPKVISAMKASKLL 504

Query: 61  SQGTWGILANVVDMAEPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPI 120
           SQGTWGILA+VVD+ EPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPI
Sbjct: 505 SQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPI 564

Query: 121 SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK 180
           SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK
Sbjct: 565 SRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK 624

Query: 181 VTVKNRYPLPRIEDLFDQLQGPPSFPR 208
           VTVKNRYPLP+I+DLFDQLQG   F +
Sbjct: 625 VTVKNRYPLPKIDDLFDQLQGATVFSK 651

The following BLAST results are available for this feature:
BLAST of Cmc03g0070031 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0025917.11.1e-11097.10pol protein [Cucumis melo var. makuwa] >KAA0042949.1 pol protein [Cucumis melo v... [more]
KAA0025998.12.6e-10492.27pol protein [Cucumis melo var. makuwa][more]
KAA0059723.12.6e-10492.27pol protein [Cucumis melo var. makuwa][more]
TYK01306.12.6e-10492.27pol protein [Cucumis melo var. makuwa][more]
KAA0060745.15.8e-10491.79pol protein [Cucumis melo var. makuwa][more]
BLAST of Cmc03g0070031 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q993151.9e-1732.70Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
Q7LHG51.9e-1732.70Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
P103946.4e-1331.82Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaste... [more]
Q9UR075.4e-1230.99Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24... [more]
P0CT415.4e-1230.99Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24... [more]
BLAST of Cmc03g0070031 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TP015.3e-11197.10Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold14... [more]
A0A5A7SIJ51.3e-10492.27Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34... [more]
A0A5A7UUX81.3e-10492.27Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13... [more]
A0A5D3BSV91.3e-10492.27Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold82... [more]
A0A5A7V4E42.8e-10491.79Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold72... [more]
BLAST of Cmc03g0070031 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR043128Reverse transcriptase/Diguanylate cyclase domainGENE3D3.30.70.270coord: 187..201
e-value: 1.1E-37
score: 131.4
IPR021109Aspartic peptidase domain superfamilyGENE3D2.40.70.10Acid Proteasescoord: 1..39
e-value: 1.9E-5
score: 26.3
NoneNo IPR availablePFAMPF08284RVP_2coord: 1..32
e-value: 1.4E-8
score: 34.6
NoneNo IPR availableGENE3D3.10.10.10HIV Type 1 Reverse Transcriptase, subunit A, domain 1coord: 108..186
e-value: 1.1E-37
score: 131.4
NoneNo IPR availablePANTHERPTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINcoord: 3..186
NoneNo IPR availablePANTHERPTHR24559:SF330RNA-DIRECTED DNA POLYMERASE HOMOLOGcoord: 3..186
NoneNo IPR availableCDDcd01647RT_LTRcoord: 146..211
e-value: 4.67826E-29
score: 104.985
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 86..201

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc03g0070031.1Cmc03g0070031.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006508 proteolysis
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
molecular_function GO:0004190 aspartic-type endopeptidase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003964 RNA-directed DNA polymerase activity
molecular_function GO:0008270 zinc ion binding