Cmc03g0063971.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc03g0063971.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Beta-galactosidase
Location	CMiso1.1chr03: 4510522 .. 4511241 (-)
Sequence length	651
RNA-Seq Expression	Cmc03g0063971.1
Synteny	Cmc03g0063971.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGTTGTTATGGAAGAGATGAAAGCTCTTGAAAAGAATAACACTTGGGAGATCTGTACCCTACCCAAGGGACACAAGTCCGTGGGATGCAAATGGGTGTTCACTCTCAAATACAAAGCAGATGGAACTCTTGACAGACACAAGGCAAGGTTAATTGCAAAAGGATTTACTCAGACCTATGGTGTTGATTATTCAGAAACTTTTTCTCTTGTTGCTTAGTTGAATACTGTCAGAGTCCTTCTTTCTGTTGCTGTAAACAAAGATTGGTCTCTATATCAGCTAGATGTTAAAAATGCTTTTTTGAATGGAGATCTAGTAGAGGAGGTATACATGAGCCCTCCGCCTGGTTTTGAAGCCCAGTTTGGTCAACAGGTTTGTAAACTTCAGAAATCCTTATATGGTCTGAAACAGTCACCCAAAGCATGGTTTGACAGATTTACTACTTTTTTCAAGTCCCAAGGATACAGTCAGGGACACTGTGATCACACTTTATTTACAAAAGTTTCCGAGACAAGGAAGATTGCAGTTCTGATAGTTTGTGTGGATAACATCGTTTTGTCTAGAGATGATCAGGCAGAAATTAGTCAACTTAAGCAGAGAATGAGTAATGAATTTGAAATCAAGGATTTAGGAAATCTGAAATATTTCCTTGGAATGGAGGTGGCCAGATCTAAAGAAGGCATCTCCGTGTCTCAGAGAAAACCCTTGATCTGCTAA

mRNA sequence

ATGAATGTTGTTATGGAAGAGATGAAAGCTCTTGAAAAGAATAACACTTGGGAGATCTGTACCCTACCCAAGGGACACAAGTCCGTGGGATGCAAATGGGTGTTCACTCTCAAATACAAAGCAGATGGAACTCTTGACAGACACAAGGCAAGGTTAATTGCAAAAGGATTTACTCAGACCTATGGTGTTGATTATTCAGAAACTTTTTCTCTTCTAGATGTTAAAAATGCTTTTTTGAATGGAGATCTAGTAGAGGAGGTATACATGAGCCCTCCGCCTGGTTTTGAAGCCCAGTTTGGTCAACAGGTTTGTAAACTTCAGAAATCCTTATATGGTCTGAAACAGTCACCCAAAGCATGGTTTGACAGATTTACTACTTTTTTCAAGTCCCAAGGATACAGTCAGGGACACTGTGATCACACTTTATTTACAAAAGTTTCCGAGACAAGGAAGATTGCAGTTCTGATAGTTTGTGTGGATAACATCGTTTTGTCTAGAGATGATCAGGCAGAAATTAGTCAACTTAAGCAGAGAATGAGTAATGAATTTGAAATCAAGGATTTAGGAAATCTGAAATATTTCCTTGGAATGGAGGTGGCCAGATCTAAAGAAGGCATCTCCGTGTCTCAGAGAAAACCCTTGATCTGCTAA

Coding sequence (CDS)

ATGAATGTTGTTATGGAAGAGATGAAAGCTCTTGAAAAGAATAACACTTGGGAGATCTGTACCCTACCCAAGGGACACAAGTCCGTGGGATGCAAATGGGTGTTCACTCTCAAATACAAAGCAGATGGAACTCTTGACAGACACAAGGCAAGGTTAATTGCAAAAGGATTTACTCAGACCTATGGTGTTGATTATTCAGAAACTTTTTCTCTTCTAGATGTTAAAAATGCTTTTTTGAATGGAGATCTAGTAGAGGAGGTATACATGAGCCCTCCGCCTGGTTTTGAAGCCCAGTTTGGTCAACAGGTTTGTAAACTTCAGAAATCCTTATATGGTCTGAAACAGTCACCCAAAGCATGGTTTGACAGATTTACTACTTTTTTCAAGTCCCAAGGATACAGTCAGGGACACTGTGATCACACTTTATTTACAAAAGTTTCCGAGACAAGGAAGATTGCAGTTCTGATAGTTTGTGTGGATAACATCGTTTTGTCTAGAGATGATCAGGCAGAAATTAGTCAACTTAAGCAGAGAATGAGTAATGAATTTGAAATCAAGGATTTAGGAAATCTGAAATATTTCCTTGGAATGGAGGTGGCCAGATCTAAAGAAGGCATCTCCGTGTCTCAGAGAAAACCCTTGATCTGCTAA

Protein sequence

MNVVMEEMKALEKNNTWEICTLPKGHKSVGCKWVFTLKYKADGTLDRHKARLIAKGFTQTYGVDYSETFSLLDVKNAFLNGDLVEEVYMSPPPGFEAQFGQQVCKLQKSLYGLKQSPKAWFDRFTTFFKSQGYSQGHCDHTLFTKVSETRKIAVLIVCVDNIVLSRDDQAEISQLKQRMSNEFEIKDLGNLKYFLGMEVARSKEGISVSQRKPLIC

Homology

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BLAST of Cmc03g0063971.1 vs. NCBI nr
Match: KAA0063166.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 379.0 bits (972), Expect = 2.7e-101
Identity = 189/234 (80.77%), Postives = 198/234 (84.62%), Query Frame = 0


Query: 2   NVVMEEMKALEKNNTWEICTLPKGHKSVGCKWVFTLKYKADGTLDRHKARLIAKGFTQTY 61
           N VMEEMKALEKN TWEIC LPKGHK+VGCKWVF+LKYKADGTLDRHKARL+AKGFTQTY
Sbjct: 593 NAVMEEMKALEKNRTWEICALPKGHKTVGCKWVFSLKYKADGTLDRHKARLVAKGFTQTY 652

Query: 62  GVDYSETFS-----------------------LLDVKNAFLNGDLVEEVYMSPPPGFEAQ 121
           G+DYSETFS                        LDVKNAFLNGDLVEEVYMSPPPGFEAQ
Sbjct: 653 GIDYSETFSPVAKLNTVRVLLSVAVNKDWPLYQLDVKNAFLNGDLVEEVYMSPPPGFEAQ 712

Query: 122 FGQQVCKLQKSLYGLKQSPKAWFDRFTTFFKSQGYSQGHCDHTLFTKVSETRKIAVLIVC 181
           FGQQVCKLQKSLYGLKQSP+AWFDRFTTF KSQGYSQGH DHTLFTK S+T KIA+LIV 
Sbjct: 713 FGQQVCKLQKSLYGLKQSPRAWFDRFTTFVKSQGYSQGHSDHTLFTKASKTGKIAILIVY 772

Query: 182 VDNIVLSRDDQAEISQLKQRMSNEFEIKDLGNLKYFLGMEVARSKEGISVSQRK 213
           VD IVL+ DDQ EISQLKQRM +EFEIKDLGNLKYFLGMEVARSKEGISVSQRK
Sbjct: 773 VDGIVLTGDDQTEISQLKQRMGDEFEIKDLGNLKYFLGMEVARSKEGISVSQRK 826

[Close]

BLAST of Cmc03g0063971.1 vs. NCBI nr
Match: TYK23097.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 378.6 bits (971), Expect = 3.5e-101
Identity = 192/234 (82.05%), Postives = 198/234 (84.62%), Query Frame = 0


Query: 2    NVVMEEMKALEKNNTWEICTLPKGHKSVGCKWVFTLKYKADGTLDRHKARLIAKGFTQTY 61
            N VMEEMKALEKNN  EIC LPKGHK VGCKWVFTLKYKADGTLDRHK RL+AKGFTQTY
Sbjct: 1261 NAVMEEMKALEKNNIGEICALPKGHKPVGCKWVFTLKYKADGTLDRHKTRLVAKGFTQTY 1320

Query: 62   GVDYSETFS-----------------------LLDVKNAFLNGDLVEEVYMSPPPGFEAQ 121
            GVDYSETFS                        LD+KNAFLNGDLVEEVYMSPPPGFEAQ
Sbjct: 1321 GVDYSETFSPVAKLNIVRVLLSVAVNKDWPLYQLDIKNAFLNGDLVEEVYMSPPPGFEAQ 1380

Query: 122  FGQQVCKLQKSLYGLKQSPKAWFDRFTTFFKSQGYSQGHCDHTLFTKVSETRKIAVLIVC 181
            FGQQVCKLQKSLYGLKQSP+AWFDRFTTF KSQGYSQGH DHTLFTKVSET KIAVLIV 
Sbjct: 1381 FGQQVCKLQKSLYGLKQSPRAWFDRFTTFVKSQGYSQGHSDHTLFTKVSETGKIAVLIVY 1440

Query: 182  VDNIVLSRDDQAEISQLKQRMSNEFEIKDLGNLKYFLGMEVARSKEGISVSQRK 213
            VD+IVLS DDQAEISQLKQR+ NEFEI+DLGNLKYFLGMEVARSKEGISVSQRK
Sbjct: 1441 VDDIVLSGDDQAEISQLKQRIGNEFEIEDLGNLKYFLGMEVARSKEGISVSQRK 1494

[Close]

BLAST of Cmc03g0063971.1 vs. NCBI nr
Match: KAA0025138.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 378.6 bits (971), Expect = 3.5e-101
Identity = 192/234 (82.05%), Postives = 198/234 (84.62%), Query Frame = 0


Query: 2    NVVMEEMKALEKNNTWEICTLPKGHKSVGCKWVFTLKYKADGTLDRHKARLIAKGFTQTY 61
            N VMEEMKALEKNN  EIC LPKGHK VGCKWVFTLKYKADGTLDRHK RL+AKGFTQTY
Sbjct: 1244 NAVMEEMKALEKNNIGEICALPKGHKPVGCKWVFTLKYKADGTLDRHKTRLVAKGFTQTY 1303

Query: 62   GVDYSETFS-----------------------LLDVKNAFLNGDLVEEVYMSPPPGFEAQ 121
            GVDYSETFS                        LD+KNAFLNGDLVEEVYMSPPPGFEAQ
Sbjct: 1304 GVDYSETFSPVAKLNIVRVLLSVAVNKDWPLYQLDIKNAFLNGDLVEEVYMSPPPGFEAQ 1363

Query: 122  FGQQVCKLQKSLYGLKQSPKAWFDRFTTFFKSQGYSQGHCDHTLFTKVSETRKIAVLIVC 181
            FGQQVCKLQKSLYGLKQSP+AWFDRFTTF KSQGYSQGH DHTLFTKVSET KIAVLIV 
Sbjct: 1364 FGQQVCKLQKSLYGLKQSPRAWFDRFTTFVKSQGYSQGHSDHTLFTKVSETGKIAVLIVY 1423

Query: 182  VDNIVLSRDDQAEISQLKQRMSNEFEIKDLGNLKYFLGMEVARSKEGISVSQRK 213
            VD+IVLS DDQAEISQLKQR+ NEFEI+DLGNLKYFLGMEVARSKEGISVSQRK
Sbjct: 1424 VDDIVLSGDDQAEISQLKQRIGNEFEIEDLGNLKYFLGMEVARSKEGISVSQRK 1477

[Close]

BLAST of Cmc03g0063971.1 vs. NCBI nr
Match: TYJ99952.1 (Beta-galactosidase [Cucumis melo var. makuwa] >TYK02395.1 Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 378.3 bits (970), Expect = 4.6e-101
Identity = 188/234 (80.34%), Postives = 199/234 (85.04%), Query Frame = 0


Query: 2    NVVMEEMKALEKNNTWEICTLPKGHKSVGCKWVFTLKYKADGTLDRHKARLIAKGFTQTY 61
            N VMEEMKALEKN TWEIC LPKGHK+VGCKWVF+LKYKADGTLDRHKARL+AKGFTQTY
Sbjct: 1109 NAVMEEMKALEKNRTWEICALPKGHKTVGCKWVFSLKYKADGTLDRHKARLVAKGFTQTY 1168

Query: 62   GVDYSETFS-----------------------LLDVKNAFLNGDLVEEVYMSPPPGFEAQ 121
            G+DYSETFS                        LDVKNAFLNGDLVEEVYMSPPPGFEAQ
Sbjct: 1169 GIDYSETFSPVAKLNTVRVLLSVAVNKDWPLYQLDVKNAFLNGDLVEEVYMSPPPGFEAQ 1228

Query: 122  FGQQVCKLQKSLYGLKQSPKAWFDRFTTFFKSQGYSQGHCDHTLFTKVSETRKIAVLIVC 181
            FGQ+VCKLQKSLYGLKQSP+AWFDRFTTF KSQGYSQGH DHTLFTK S+T KIA+LIV 
Sbjct: 1229 FGQEVCKLQKSLYGLKQSPRAWFDRFTTFVKSQGYSQGHSDHTLFTKASKTGKIAILIVY 1288

Query: 182  VDNIVLSRDDQAEISQLKQRMSNEFEIKDLGNLKYFLGMEVARSKEGISVSQRK 213
            VD+IVL+ DDQ EISQLKQRM +EFEIKDLGNLKYFLGMEVARSKEGISVSQRK
Sbjct: 1289 VDDIVLTGDDQTEISQLKQRMGDEFEIKDLGNLKYFLGMEVARSKEGISVSQRK 1342

[Close]

BLAST of Cmc03g0063971.1 vs. NCBI nr
Match: KAA0031941.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 378.3 bits (970), Expect = 4.6e-101
Identity = 188/234 (80.34%), Postives = 199/234 (85.04%), Query Frame = 0


Query: 2    NVVMEEMKALEKNNTWEICTLPKGHKSVGCKWVFTLKYKADGTLDRHKARLIAKGFTQTY 61
            N VMEEMKALEKN TWEIC LPKGHK+VGCKWVF+LKYKADGTLDRHKARL+AKGFTQTY
Sbjct: 1083 NAVMEEMKALEKNRTWEICALPKGHKTVGCKWVFSLKYKADGTLDRHKARLVAKGFTQTY 1142

Query: 62   GVDYSETFS-----------------------LLDVKNAFLNGDLVEEVYMSPPPGFEAQ 121
            G+DYSETFS                        LDVKNAFLNGDLVEEVYMSPPPGFEAQ
Sbjct: 1143 GIDYSETFSPVAKLNTVRVLLSVAVNKDWPLYQLDVKNAFLNGDLVEEVYMSPPPGFEAQ 1202

Query: 122  FGQQVCKLQKSLYGLKQSPKAWFDRFTTFFKSQGYSQGHCDHTLFTKVSETRKIAVLIVC 181
            FGQ+VCKLQKSLYGLKQSP+AWFDRFTTF KSQGYSQGH DHTLFTK S+T KIA+LIV 
Sbjct: 1203 FGQEVCKLQKSLYGLKQSPRAWFDRFTTFVKSQGYSQGHSDHTLFTKASKTGKIAILIVY 1262

Query: 182  VDNIVLSRDDQAEISQLKQRMSNEFEIKDLGNLKYFLGMEVARSKEGISVSQRK 213
            VD+IVL+ DDQ EISQLKQRM +EFEIKDLGNLKYFLGMEVARSKEGISVSQRK
Sbjct: 1263 VDDIVLTGDDQTEISQLKQRMGDEFEIKDLGNLKYFLGMEVARSKEGISVSQRK 1316

[Close]

BLAST of Cmc03g0063971.1 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 3.5e-43
Identity = 93/227 (40.97%), Postives = 134/227 (59.03%), Query Frame = 0


Query: 1    MNVVMEEMKALEKNNTWEICTLPKGHKSVGCKWVFTLKYKADGTLDRHKARLIAKGFTQT 60
            M  + EEM++L+KN T+++  LPKG + + CKWVF LK   D  L R+KARL+ KGF Q 
Sbjct: 827  MKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQK 886

Query: 61   YGVDYSETFS-----------------------LLDVKNAFLNGDLVEEVYMSPPPGFE- 120
             G+D+ E FS                        LDVK AFL+GDL EE+YM  P GFE 
Sbjct: 887  KGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEV 946

Query: 121  AQFGQQVCKLQKSLYGLKQSPKAWFDRFTTFFKSQGYSQGHCDHTLFTKVSETRKIAVLI 180
            A     VCKL KSLYGLKQ+P+ W+ +F +F KSQ Y + + D  ++ K        +L+
Sbjct: 947  AGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILL 1006

Query: 181  VCVDNIVLSRDDQAEISQLKQRMSNEFEIKDLGNLKYFLGMEVARSK 204
            + VD++++   D+  I++LK  +S  F++KDLG  +  LGM++ R +
Sbjct: 1007 LYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRER 1053

[Close]

BLAST of Cmc03g0063971.1 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.1e-41
Identity = 91/239 (38.08%), Postives = 137/239 (57.32%), Query Frame = 0


Query: 2    NVVMEEMKALEKNNTWEICTLPKGHKS-VGCKWVFTLKYKADGTLDRHKARLIAKGFTQT 61
            N +  E+ A   N+TW++   P  H + VGC+W+FT KY +DG+L+R+KARL+AKG+ Q 
Sbjct: 970  NAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQR 1029

Query: 62   YGVDYSETFS-----------------------LLDVKNAFLNGDLVEEVYMSPPPGF-E 121
             G+DY+ETFS                        LDV NAFL G L ++VYMS PPGF +
Sbjct: 1030 PGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFID 1089

Query: 122  AQFGQQVCKLQKSLYGLKQSPKAWFDRFTTFFKSQGYSQGHCDHTLFTKVSETRKIAVLI 181
                  VCKL+K+LYGLKQ+P+AW+     +  + G+     D +LF  +   + I  ++
Sbjct: 1090 KDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFV-LQRGKSIVYML 1149

Query: 182  VCVDNIVLSRDDQAEISQLKQRMSNEFEIKDLGNLKYFLGMEVARSKEGISVSQRKPLI 216
            V VD+I+++ +D   +      +S  F +KD   L YFLG+E  R   G+ +SQR+ ++
Sbjct: 1150 VYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYIL 1207

[Close]

BLAST of Cmc03g0063971.1 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 4.7e-40
Identity = 88/231 (38.10%), Postives = 135/231 (58.44%), Query Frame = 0


Query: 7    EMKALEKNNTWEICTLPKGHKS-VGCKWVFTLKYKADGTLDRHKARLIAKGFTQTYGVDY 66
            E+ A   N+TW++   P    + VGC+W+FT K+ +DG+L+R+KARL+AKG+ Q  G+DY
Sbjct: 958  EINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGYNQRPGLDY 1017

Query: 67   SETFS-----------------------LLDVKNAFLNGDLVEEVYMSPPPGF-EAQFGQ 126
            +ETFS                        LDV NAFL G L +EVYMS PPGF +     
Sbjct: 1018 AETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKDRPD 1077

Query: 127  QVCKLQKSLYGLKQSPKAWFDRFTTFFKSQGYSQGHCDHTLFTKVSETRKIAVLIVCVDN 186
             VC+L+K++YGLKQ+P+AW+    T+  + G+     D +LF  +   R I  ++V VD+
Sbjct: 1078 YVCRLRKAIYGLKQAPRAWYVELRTYLLTVGFVNSISDTSLFV-LQRGRSIIYMLVYVDD 1137

Query: 187  IVLSRDDQAEISQLKQRMSNEFEIKDLGNLKYFLGMEVARSKEGISVSQRK 213
            I+++ +D   +      +S  F +K+  +L YFLG+E  R  +G+ +SQR+
Sbjct: 1138 ILITGNDTVLLKHTLDALSQRFSVKEHEDLHYFLGIEAKRVPQGLHLSQRR 1187

[Close]

BLAST of Cmc03g0063971.1 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 142.5 bits (358), Expect = 5.5e-33
Identity = 79/229 (34.50%), Postives = 120/229 (52.40%), Query Frame = 0


Query: 7    EMKALEKNNTWEICTLPKGHKSVGCKWVFTLKYKADGTLDRHKARLIAKGFTQTYGVDYS 66
            E+ A + NNTW I   P+    V  +WVF++KY   G   R+KARL+A+GFTQ Y +DY 
Sbjct: 913  ELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYE 972

Query: 67   ETFS-----------------------LLDVKNAFLNGDLVEEVYMSPPPGFEAQFGQQV 126
            ETF+                        +DVK AFLNG L EE+YM  P G        V
Sbjct: 973  ETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGISCN-SDNV 1032

Query: 127  CKLQKSLYGLKQSPKAWFDRFTTFFKSQGYSQGHCDHTLF--TKVSETRKIAVLIVCVDN 186
            CKL K++YGLKQ+ + WF+ F    K   +     D  ++   K +    I VL+  VD+
Sbjct: 1033 CKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENIYVLLY-VDD 1092

Query: 187  IVLSRDDQAEISQLKQRMSNEFEIKDLGNLKYFLGMEVARSKEGISVSQ 211
            +V++  D   ++  K+ +  +F + DL  +K+F+G+ +   ++ I +SQ
Sbjct: 1093 VVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQ 1139

[Close]

BLAST of Cmc03g0063971.1 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 8.3e-13
Identity = 34/67 (50.75%), Postives = 44/67 (65.67%), Query Frame = 0


Query: 4   VMEEMKALEKNNTWEICTLPKGHKSVGCKWVFTLKYKADGTLDRHKARLIAKGFTQTYGV 63
           + EE+ AL +N TW +   P     +GCKWVF  K  +DGTLDR KARL+AKGF Q  G+
Sbjct: 44  MQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGI 103

Query: 64  DYSETFS 71
            + ET+S
Sbjct: 104 YFVETYS 110

[Close]

BLAST of Cmc03g0063971.1 vs. ExPASy TrEMBL
Match: A0A5A7V9P8 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold381G00520 PE=4 SV=1)

HSP 1 Score: 379.0 bits (972), Expect = 1.3e-101
Identity = 189/234 (80.77%), Postives = 198/234 (84.62%), Query Frame = 0


Query: 2   NVVMEEMKALEKNNTWEICTLPKGHKSVGCKWVFTLKYKADGTLDRHKARLIAKGFTQTY 61
           N VMEEMKALEKN TWEIC LPKGHK+VGCKWVF+LKYKADGTLDRHKARL+AKGFTQTY
Sbjct: 593 NAVMEEMKALEKNRTWEICALPKGHKTVGCKWVFSLKYKADGTLDRHKARLVAKGFTQTY 652

Query: 62  GVDYSETFS-----------------------LLDVKNAFLNGDLVEEVYMSPPPGFEAQ 121
           G+DYSETFS                        LDVKNAFLNGDLVEEVYMSPPPGFEAQ
Sbjct: 653 GIDYSETFSPVAKLNTVRVLLSVAVNKDWPLYQLDVKNAFLNGDLVEEVYMSPPPGFEAQ 712

Query: 122 FGQQVCKLQKSLYGLKQSPKAWFDRFTTFFKSQGYSQGHCDHTLFTKVSETRKIAVLIVC 181
           FGQQVCKLQKSLYGLKQSP+AWFDRFTTF KSQGYSQGH DHTLFTK S+T KIA+LIV 
Sbjct: 713 FGQQVCKLQKSLYGLKQSPRAWFDRFTTFVKSQGYSQGHSDHTLFTKASKTGKIAILIVY 772

Query: 182 VDNIVLSRDDQAEISQLKQRMSNEFEIKDLGNLKYFLGMEVARSKEGISVSQRK 213
           VD IVL+ DDQ EISQLKQRM +EFEIKDLGNLKYFLGMEVARSKEGISVSQRK
Sbjct: 773 VDGIVLTGDDQTEISQLKQRMGDEFEIKDLGNLKYFLGMEVARSKEGISVSQRK 826

[Close]

BLAST of Cmc03g0063971.1 vs. ExPASy TrEMBL
Match: A0A5A7SG80 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold124G00380 PE=3 SV=1)

HSP 1 Score: 378.6 bits (971), Expect = 1.7e-101
Identity = 192/234 (82.05%), Postives = 198/234 (84.62%), Query Frame = 0


Query: 2    NVVMEEMKALEKNNTWEICTLPKGHKSVGCKWVFTLKYKADGTLDRHKARLIAKGFTQTY 61
            N VMEEMKALEKNN  EIC LPKGHK VGCKWVFTLKYKADGTLDRHK RL+AKGFTQTY
Sbjct: 1244 NAVMEEMKALEKNNIGEICALPKGHKPVGCKWVFTLKYKADGTLDRHKTRLVAKGFTQTY 1303

Query: 62   GVDYSETFS-----------------------LLDVKNAFLNGDLVEEVYMSPPPGFEAQ 121
            GVDYSETFS                        LD+KNAFLNGDLVEEVYMSPPPGFEAQ
Sbjct: 1304 GVDYSETFSPVAKLNIVRVLLSVAVNKDWPLYQLDIKNAFLNGDLVEEVYMSPPPGFEAQ 1363

Query: 122  FGQQVCKLQKSLYGLKQSPKAWFDRFTTFFKSQGYSQGHCDHTLFTKVSETRKIAVLIVC 181
            FGQQVCKLQKSLYGLKQSP+AWFDRFTTF KSQGYSQGH DHTLFTKVSET KIAVLIV 
Sbjct: 1364 FGQQVCKLQKSLYGLKQSPRAWFDRFTTFVKSQGYSQGHSDHTLFTKVSETGKIAVLIVY 1423

Query: 182  VDNIVLSRDDQAEISQLKQRMSNEFEIKDLGNLKYFLGMEVARSKEGISVSQRK 213
            VD+IVLS DDQAEISQLKQR+ NEFEI+DLGNLKYFLGMEVARSKEGISVSQRK
Sbjct: 1424 VDDIVLSGDDQAEISQLKQRIGNEFEIEDLGNLKYFLGMEVARSKEGISVSQRK 1477

[Close]

BLAST of Cmc03g0063971.1 vs. ExPASy TrEMBL
Match: A0A5D3DHC0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G00790 PE=3 SV=1)

HSP 1 Score: 378.6 bits (971), Expect = 1.7e-101
Identity = 192/234 (82.05%), Postives = 198/234 (84.62%), Query Frame = 0


Query: 2    NVVMEEMKALEKNNTWEICTLPKGHKSVGCKWVFTLKYKADGTLDRHKARLIAKGFTQTY 61
            N VMEEMKALEKNN  EIC LPKGHK VGCKWVFTLKYKADGTLDRHK RL+AKGFTQTY
Sbjct: 1261 NAVMEEMKALEKNNIGEICALPKGHKPVGCKWVFTLKYKADGTLDRHKTRLVAKGFTQTY 1320

Query: 62   GVDYSETFS-----------------------LLDVKNAFLNGDLVEEVYMSPPPGFEAQ 121
            GVDYSETFS                        LD+KNAFLNGDLVEEVYMSPPPGFEAQ
Sbjct: 1321 GVDYSETFSPVAKLNIVRVLLSVAVNKDWPLYQLDIKNAFLNGDLVEEVYMSPPPGFEAQ 1380

Query: 122  FGQQVCKLQKSLYGLKQSPKAWFDRFTTFFKSQGYSQGHCDHTLFTKVSETRKIAVLIVC 181
            FGQQVCKLQKSLYGLKQSP+AWFDRFTTF KSQGYSQGH DHTLFTKVSET KIAVLIV 
Sbjct: 1381 FGQQVCKLQKSLYGLKQSPRAWFDRFTTFVKSQGYSQGHSDHTLFTKVSETGKIAVLIVY 1440

Query: 182  VDNIVLSRDDQAEISQLKQRMSNEFEIKDLGNLKYFLGMEVARSKEGISVSQRK 213
            VD+IVLS DDQAEISQLKQR+ NEFEI+DLGNLKYFLGMEVARSKEGISVSQRK
Sbjct: 1441 VDDIVLSGDDQAEISQLKQRIGNEFEIEDLGNLKYFLGMEVARSKEGISVSQRK 1494

[Close]

BLAST of Cmc03g0063971.1 vs. ExPASy TrEMBL
Match: A0A5D3BJK7 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G001020 PE=4 SV=1)

HSP 1 Score: 378.3 bits (970), Expect = 2.2e-101
Identity = 188/234 (80.34%), Postives = 199/234 (85.04%), Query Frame = 0


Query: 2    NVVMEEMKALEKNNTWEICTLPKGHKSVGCKWVFTLKYKADGTLDRHKARLIAKGFTQTY 61
            N VMEEMKALEKN TWEIC LPKGHK+VGCKWVF+LKYKADGTLDRHKARL+AKGFTQTY
Sbjct: 1109 NAVMEEMKALEKNRTWEICALPKGHKTVGCKWVFSLKYKADGTLDRHKARLVAKGFTQTY 1168

Query: 62   GVDYSETFS-----------------------LLDVKNAFLNGDLVEEVYMSPPPGFEAQ 121
            G+DYSETFS                        LDVKNAFLNGDLVEEVYMSPPPGFEAQ
Sbjct: 1169 GIDYSETFSPVAKLNTVRVLLSVAVNKDWPLYQLDVKNAFLNGDLVEEVYMSPPPGFEAQ 1228

Query: 122  FGQQVCKLQKSLYGLKQSPKAWFDRFTTFFKSQGYSQGHCDHTLFTKVSETRKIAVLIVC 181
            FGQ+VCKLQKSLYGLKQSP+AWFDRFTTF KSQGYSQGH DHTLFTK S+T KIA+LIV 
Sbjct: 1229 FGQEVCKLQKSLYGLKQSPRAWFDRFTTFVKSQGYSQGHSDHTLFTKASKTGKIAILIVY 1288

Query: 182  VDNIVLSRDDQAEISQLKQRMSNEFEIKDLGNLKYFLGMEVARSKEGISVSQRK 213
            VD+IVL+ DDQ EISQLKQRM +EFEIKDLGNLKYFLGMEVARSKEGISVSQRK
Sbjct: 1289 VDDIVLTGDDQTEISQLKQRMGDEFEIKDLGNLKYFLGMEVARSKEGISVSQRK 1342

[Close]

BLAST of Cmc03g0063971.1 vs. ExPASy TrEMBL
Match: A0A5D3C4T4 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10G00040 PE=4 SV=1)

HSP 1 Score: 378.3 bits (970), Expect = 2.2e-101
Identity = 188/234 (80.34%), Postives = 199/234 (85.04%), Query Frame = 0


Query: 2    NVVMEEMKALEKNNTWEICTLPKGHKSVGCKWVFTLKYKADGTLDRHKARLIAKGFTQTY 61
            N VMEEMKALEKN TWEIC LPKGHK+VGCKWVF+LKYKADGTLDRHKARL+AKGFTQTY
Sbjct: 1109 NAVMEEMKALEKNRTWEICALPKGHKTVGCKWVFSLKYKADGTLDRHKARLVAKGFTQTY 1168

Query: 62   GVDYSETFS-----------------------LLDVKNAFLNGDLVEEVYMSPPPGFEAQ 121
            G+DYSETFS                        LDVKNAFLNGDLVEEVYMSPPPGFEAQ
Sbjct: 1169 GIDYSETFSPVAKLNTVRVLLSVAVNKDWPLYQLDVKNAFLNGDLVEEVYMSPPPGFEAQ 1228

Query: 122  FGQQVCKLQKSLYGLKQSPKAWFDRFTTFFKSQGYSQGHCDHTLFTKVSETRKIAVLIVC 181
            FGQ+VCKLQKSLYGLKQSP+AWFDRFTTF KSQGYSQGH DHTLFTK S+T KIA+LIV 
Sbjct: 1229 FGQEVCKLQKSLYGLKQSPRAWFDRFTTFVKSQGYSQGHSDHTLFTKASKTGKIAILIVY 1288

Query: 182  VDNIVLSRDDQAEISQLKQRMSNEFEIKDLGNLKYFLGMEVARSKEGISVSQRK 213
            VD+IVL+ DDQ EISQLKQRM +EFEIKDLGNLKYFLGMEVARSKEGISVSQRK
Sbjct: 1289 VDDIVLTGDDQTEISQLKQRMGDEFEIKDLGNLKYFLGMEVARSKEGISVSQRK 1342

[Close]

BLAST of Cmc03g0063971.1 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 218.0 bits (554), Expect = 7.4e-57
Identity = 107/235 (45.53%), Postives = 153/235 (65.11%), Query Frame = 0


Query: 6   EEMKALEKNNTWEICTLPKGHKSVGCKWVFTLKYKADGTLDRHKARLIAKGFTQTYGVDY 65
           +E+ A+E  +TWEICTLP   K +GCKWV+ +KY +DGT++R+KARL+AKG+TQ  G+D+
Sbjct: 104 DEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGIDF 163

Query: 66  SETFS-----------------------LLDVKNAFLNGDLVEEVYMSPPPGFEAQFGQQ 125
            ETFS                        LD+ NAFLNGDL EE+YM  PPG+ A+ G  
Sbjct: 164 IETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDS 223

Query: 126 -----VCKLQKSLYGLKQSPKAWFDRFTTFFKSQGYSQGHCDHTLFTKVSETRKIAVLIV 185
                VC L+KS+YGLKQ+ + WF +F+      G+ Q H DHT F K++ T  + VL V
Sbjct: 224 LPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVL-V 283

Query: 186 CVDNIVLSRDDQAEISQLKQRMSNEFEIKDLGNLKYFLGMEVARSKEGISVSQRK 213
            VD+I++  ++ A + +LK ++ + F+++DLG LKYFLG+E+ARS  GI++ QRK
Sbjct: 284 YVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINICQRK 337

[Close]

BLAST of Cmc03g0063971.1 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 75.5 bits (184), Expect = 5.9e-14
Identity = 34/67 (50.75%), Postives = 44/67 (65.67%), Query Frame = 0


Query: 4   VMEEMKALEKNNTWEICTLPKGHKSVGCKWVFTLKYKADGTLDRHKARLIAKGFTQTYGV 63
           + EE+ AL +N TW +   P     +GCKWVF  K  +DGTLDR KARL+AKGF Q  G+
Sbjct: 44  MQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGI 103

Query: 64  DYSETFS 71
            + ET+S
Sbjct: 104 YFVETYS 110

[Close]

BLAST of Cmc03g0063971.1 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 42.4 bits (98), Expect = 5.6e-04
Identity = 20/58 (34.48%), Postives = 37/58 (63.79%), Query Frame = 0


Query: 155 LIVCVDNIVLSRDDQAEISQLKQRMSNEFEIKDLGNLKYFLGMEVARSKEGISVSQRK 213
           L++ VD+I+L+      ++ L  ++S+ F +KDLG + YFLG+++     G+ +SQ K
Sbjct: 3   LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTK 60

The following BLAST results are available for this feature:

BLAST of Cmc03g0063971.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063166.1	2.7e-101	80.77	Beta-galactosidase [Cucumis melo var. makuwa]	[more]
TYK23097.1	3.5e-101	82.05	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0025138.1	3.5e-101	82.05	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYJ99952.1	4.6e-101	80.34	Beta-galactosidase [Cucumis melo var. makuwa] >TYK02395.1 Beta-galactosidase [Cu...	[more]
KAA0031941.1	4.6e-101	80.34	Beta-galactosidase [Cucumis melo var. makuwa]	[more]

BLAST of Cmc03g0063971.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	3.5e-43	40.97	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q94HW2	1.1e-41	38.08	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	4.7e-40	38.10	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	5.5e-33	34.50	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P92520	8.3e-13	50.75	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc03g0063971.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V9P8	1.3e-101	80.77	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold381G0...	[more]
A0A5A7SG80	1.7e-101	82.05	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3DHC0	1.7e-101	82.05	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3BJK7	2.2e-101	80.34	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G0...	[more]
A0A5D3C4T4	2.2e-101	80.34	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10G00...	[more]

BLAST of Cmc03g0063971.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	7.4e-57	45.53	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	5.9e-14	50.75	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]
ATMG00810.1	5.6e-04	34.48	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 14..70 e-value: 3.9E-14 score: 52.8 coord: 72..211 e-value: 5.1E-36 score: 124.5
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 8..71 coord: 72..212
None	No IPR available	PANTHER	PTHR11439:SF351	CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8	coord: 8..71 coord: 72..212
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 13..212

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc03g0063971	Cmc03g0063971	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc03g0063971.1-exon	Cmc03g0063971.1-exon-CMiso1.1chr03:4510522..4510959	exon
Cmc03g0063971.1-exon	Cmc03g0063971.1-exon-CMiso1.1chr03:4511029..4511241	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc03g0063971.1-cds	Cmc03g0063971.1-cds-CMiso1.1chr03:4510522..4510959	CDS
Cmc03g0063971.1-cds	Cmc03g0063971.1-cds-CMiso1.1chr03:4511029..4511241	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc03g0063971.1	Cmc03g0063971.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0032456	endocytic recycling
biological_process	GO:0015031	protein transport
cellular_component	GO:0005768	endosome
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0016884	carbon-nitrogen ligase activity, with glutamine as amido-N-donor
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0003676	nucleic acid binding