Cmc01g0026011 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0026011
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr01: 27015268 .. 27016335 (+)
RNA-Seq Expression	Cmc01g0026011
Synteny	Cmc01g0026011

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGACAATTCCAAGGAATGGTGGGTAGACACTGGGGCTACTTGTCATATTTGTGCTAACAAGAATATGTTCACATCATATGTGTTAGTCTCTAGTGGAGAACAATTATTTATGGGTAACTCATCTACTTCAAAGGTTGAGGGACAAGGAAGAGTGATTCCTAAGATGACATCTGGCAAGGAACTAACTCTCAACAATGTGCTTCATGTTCCTGACACTCACAAGAACTTGATTTCTGGTTCATTGCTTAGTAAGAATGGCTTTAAGTTGGTCTTTGTATCTGGTAAATTTGTATTTTTCAAGAATAAGATGTATATGGGAATGGATTATTTGAGTGATGGTCTGTTTAAATTAAATGTAATCGAAGTTGTACCAAAAAGTATTAATAATAATAAAGTATCTACTTTTGCTTATATTGTTGAGTCATTTGTTTGGCATAGCAGACTAGGACATGTCAACTTCAATTCTTTGCTTAGGCTAATTAATACGAAATTGATTCCAAAATTCACTTTTGATACAAATCATAGATGTGAAGTATGTGTGGAATCAAAAATGACCAAAGCACCTTTTCATTCCACTGAGAGATTGACCAAACCTTTAGAGTTAATTCACAGTGATGTTTGTGACTTGAAATTTGTGCAAACTAAAGGTGGGAAAAAGTATTTTATTACTTTTATAGATGATTACACAAGATATTGTTATGTTTATTTGCTGAAAAGCAAAGATGAGGCAATTGAAGTGTTTAAGCTTTATAAAAAAGAGATTGAAAATCAACTTCGCACAAAAATTAAGGCATTAAGAAGTCATCGAGGTGGTGAATATCGTCCTACTTTCGAACAATTTTGTCCAGAATATGGCATTATTCACCAAACTATTGCTCCTTACTCACCTCAATCCAATGGAATTGTTGAACGAAAAAATCGAACACTTAAGGAAATGATGAACGCAATGCTTATAAGTTCAAGTTTACCCCAAAATTTGTGGGGAGAAGCTTTGTTGACAGAAAATTACTTATTAAACAGGATACCTCATAAGAAGTCACAAAATATTCCTTATGAAAAATAG

mRNA sequence

ATGGTGGACAATTCCAAGGAATGGTGGGTAGACACTGGGGCTACTTGTCATATTTGTGCTAACAAGAATATGTTCACATCATATGTGTTAGTCTCTAGTGGAGAACAATTATTTATGGGTAACTCATCTACTTCAAAGGTTGAGGGACAAGGAAGAGTGATTCCTAAGATGACATCTGGCAAGGAACTAACTCTCAACAATGTGCTTCATGTTCCTGACACTCACAAGAACTTGATTTCTGGTTCATTGCTTAGTAAGAATGGCTTTAAGTTGGTCTTTGTATCTGGTAAATTTGTATTTTTCAAGAATAAGATGTATATGGGAATGGATTATTTGAGTGATGGTCTGTTTAAATTAAATGTAATCGAAGTTGTACCAAAAAGTATTAATAATAATAAAGTATCTACTTTTGCTTATATTGTTGAGTCATTTGTTTGGCATAGCAGACTAGGACATGTCAACTTCAATTCTTTGCTTAGGCTAATTAATACGAAATTGATTCCAAAATTCACTTTTGATACAAATCATAGATGTGAAGTATGTGTGGAATCAAAAATGACCAAAGCACCTTTTCATTCCACTGAGAGATTGACCAAACCTTTAGAGTTAATTCACAGTGATGTTTGTGACTTGAAATTTGTGCAAACTAAAGGTGGGAAAAAGTATTTTATTACTTTTATAGATGATTACACAAGATATTGTTATGTTTATTTGCTGAAAAGCAAAGATGAGGCAATTGAAGTGTTTAAGCTTTATAAAAAAGAGATTGAAAATCAACTTCGCACAAAAATTAAGGCATTAAGAAGTCATCGAGGTGGTGAATATCGTCCTACTTTCGAACAATTTTGTCCAGAATATGGCATTATTCACCAAACTATTGCTCCTTACTCACCTCAATCCAATGGAATTGTTGAACGAAAAAATCGAACACTTAAGGAAATGATGAACGCAATGCTTATAAGTTCAAGTTTACCCCAAAATTTGTGGGGAGAAGCTTTGTTGACAGAAAATTACTTATTAAACAGGATACCTCATAAGAAGTCACAAAATATTCCTTATGAAAAATAG

Coding sequence (CDS)

ATGGTGGACAATTCCAAGGAATGGTGGGTAGACACTGGGGCTACTTGTCATATTTGTGCTAACAAGAATATGTTCACATCATATGTGTTAGTCTCTAGTGGAGAACAATTATTTATGGGTAACTCATCTACTTCAAAGGTTGAGGGACAAGGAAGAGTGATTCCTAAGATGACATCTGGCAAGGAACTAACTCTCAACAATGTGCTTCATGTTCCTGACACTCACAAGAACTTGATTTCTGGTTCATTGCTTAGTAAGAATGGCTTTAAGTTGGTCTTTGTATCTGGTAAATTTGTATTTTTCAAGAATAAGATGTATATGGGAATGGATTATTTGAGTGATGGTCTGTTTAAATTAAATGTAATCGAAGTTGTACCAAAAAGTATTAATAATAATAAAGTATCTACTTTTGCTTATATTGTTGAGTCATTTGTTTGGCATAGCAGACTAGGACATGTCAACTTCAATTCTTTGCTTAGGCTAATTAATACGAAATTGATTCCAAAATTCACTTTTGATACAAATCATAGATGTGAAGTATGTGTGGAATCAAAAATGACCAAAGCACCTTTTCATTCCACTGAGAGATTGACCAAACCTTTAGAGTTAATTCACAGTGATGTTTGTGACTTGAAATTTGTGCAAACTAAAGGTGGGAAAAAGTATTTTATTACTTTTATAGATGATTACACAAGATATTGTTATGTTTATTTGCTGAAAAGCAAAGATGAGGCAATTGAAGTGTTTAAGCTTTATAAAAAAGAGATTGAAAATCAACTTCGCACAAAAATTAAGGCATTAAGAAGTCATCGAGGTGGTGAATATCGTCCTACTTTCGAACAATTTTGTCCAGAATATGGCATTATTCACCAAACTATTGCTCCTTACTCACCTCAATCCAATGGAATTGTTGAACGAAAAAATCGAACACTTAAGGAAATGATGAACGCAATGCTTATAAGTTCAAGTTTACCCCAAAATTTGTGGGGAGAAGCTTTGTTGACAGAAAATTACTTATTAAACAGGATACCTCATAAGAAGTCACAAAATATTCCTTATGAAAAATAG

Protein sequence

MVDNSKEWWVDTGATCHICANKNMFTSYVLVSSGEQLFMGNSSTSKVEGQGRVIPKMTSGKELTLNNVLHVPDTHKNLISGSLLSKNGFKLVFVSGKFVFFKNKMYMGMDYLSDGLFKLNVIEVVPKSINNNKVSTFAYIVESFVWHSRLGHVNFNSLLRLINTKLIPKFTFDTNHRCEVCVESKMTKAPFHSTERLTKPLELIHSDVCDLKFVQTKGGKKYFITFIDDYTRYCYVYLLKSKDEAIEVFKLYKKEIENQLRTKIKALRSHRGGEYRPTFEQFCPEYGIIHQTIAPYSPQSNGIVERKNRTLKEMMNAMLISSSLPQNLWGEALLTENYLLNRIPHKKSQNIPYEK

Homology

[Close]

BLAST of Cmc01g0026011 vs. NCBI nr
Match: RVW26252.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 525.4 bits (1352), Expect = 3.8e-145
Identity = 251/335 (74.93%), Postives = 291/335 (86.87%), Query Frame = 0


Query: 1   MVDNSKEWWVDTGATCHICANKNMFTSYVLVSSGEQLFMGNSSTSKVEGQGRVIPKMTSG 60
           +V N+KEWWVDTGATCHIC+NK MF++Y  V   E+LFMGNSS+SKVEG+G+VI KMTSG
Sbjct: 301 IVGNTKEWWVDTGATCHICSNKWMFSTYKPVEQNEELFMGNSSSSKVEGRGKVILKMTSG 360

Query: 61  KELTLNNVLHVPDTHKNLISGSLLSKNGFKLVFVSGKFVFFKNKMYMGMDYLSDGLFKLN 120
           KELTLN+VLHVPD HKNL+SGSLLSKNGFKLVFVS KFV  KN+M++G  YLSDGLFK+N
Sbjct: 361 KELTLNDVLHVPDIHKNLVSGSLLSKNGFKLVFVSDKFVLTKNEMFVGKGYLSDGLFKMN 420

Query: 121 VIEVVPKSINNNKVSTFAYIVESF-VWHSRLGHVNFNSLLRLINTKLIPKFTFDTNHRCE 180
           V+ VVPKSINNNK+ + AY++ES  +WH RLGHVN+++L RLI+   +PKF  DTNH+CE
Sbjct: 421 VMTVVPKSINNNKIDSSAYLLESSNIWHGRLGHVNYDTLRRLIHLDYLPKFNIDTNHKCE 480

Query: 181 VCVESKMTKAPFHSTERLTKPLELIHSDVCDLKFVQTKGGKKYFITFIDDYTRYCYVYLL 240
            CVESK+TK PFHS ER T+PL+LIH+D+CDLKFVQT+GGKKYFITFIDD TRYCYVYLL
Sbjct: 481 TCVESKLTKVPFHSVERSTEPLDLIHNDICDLKFVQTRGGKKYFITFIDDCTRYCYVYLL 540

Query: 241 KSKDEAIEVFKLYKKEIENQLRTKIKALRSHRGGEYRPTFEQFCPEYGIIHQTIAPYSPQ 300
           +SKDEAIE+FK YK E+ENQL  KIKA+RS RGGEY   FE+FC E+GIIHQT APYSPQ
Sbjct: 541 QSKDEAIEMFKHYKNEVENQLSKKIKAIRSDRGGEYESLFEEFCLEHGIIHQTTAPYSPQ 600

Query: 301 SNGIVERKNRTLKEMMNAMLISSSLPQNLWGEALL 335
           SNGI E KNRTLKEMMNAML+SS LPQNLWGEALL
Sbjct: 601 SNGIAECKNRTLKEMMNAMLLSSGLPQNLWGEALL 635

[Close]

BLAST of Cmc01g0026011 vs. NCBI nr
Match: CAN66576.1 (hypothetical protein VITISV_016964 [Vitis vinifera])

HSP 1 Score: 491.5 bits (1264), Expect = 6.1e-135
Identity = 236/320 (73.75%), Postives = 276/320 (86.25%), Query Frame = 0


Query: 4   NSKEWWVDTGATCHICANKNMFTSYVLVSSGEQLFMGNSSTSKVEGQGRVIPKMTSGKEL 63
           N+KEWWVDTGAT HIC+NK MF++Y  V   E+LFMGNSS+SK+EG+G+VI KMTSGKEL
Sbjct: 459 NTKEWWVDTGATRHICSNKWMFSTYKPVEQNEELFMGNSSSSKIEGRGKVILKMTSGKEL 518

Query: 64  TLNNVLHVPDTHKNLISGSLLSKNGFKLVFVSGKFVFFKNKMYMGMDYLSDGLFKLNVIE 123
           TLN+VLHVPD  KNL+SGSLLSKNGFKLVFVS KFV  KN+M++G  YLSDGLFK+NV+ 
Sbjct: 519 TLNDVLHVPDICKNLVSGSLLSKNGFKLVFVSDKFVLTKNEMFVGKGYLSDGLFKMNVMT 578

Query: 124 VVPKSINNNKVSTFAYIVESF-VWHSRLGHVNFNSLLRLINTKLIPKFTFDTNHRCEVCV 183
           VVPKSINNNK+ + AY+++S  +WH RLGHVN+++L RLI+   +PKF  D NH+CE CV
Sbjct: 579 VVPKSINNNKIDSSAYLLKSSNIWHGRLGHVNYDTLCRLIHLDYLPKFNIDPNHKCETCV 638

Query: 184 ESKMTKAPFHSTERLTKPLELIHSDVCDLKFVQTKGGKKYFITFIDDYTRYCYVYLLKSK 243
           ESK+TK PFHS ER T+PL+L HSD+CDLKFVQT+GGKKYFITFIDD TRYCYVYLLKSK
Sbjct: 639 ESKLTKVPFHSVERSTEPLDLFHSDICDLKFVQTRGGKKYFITFIDDCTRYCYVYLLKSK 698

Query: 244 DEAIEVFKLYKKEIENQLRTKIKALRSHRGGEYRPTFEQFCPEYGIIHQTIAPYSPQSNG 303
           DEAIE+FK YK E+ENQL  KIKA+RS RGGEY   FE+FC E+GIIHQTIAPYSPQSNG
Sbjct: 699 DEAIEMFKHYKIEVENQLSKKIKAIRSDRGGEYESPFEEFCLEHGIIHQTIAPYSPQSNG 758

Query: 304 IVERKNRTLKEMMNAMLISS 323
           + ERKNRTLKEMMNAML+SS
Sbjct: 759 MAERKNRTLKEMMNAMLLSS 778

[Close]

BLAST of Cmc01g0026011 vs. NCBI nr
Match: RVX20631.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 489.2 bits (1258), Expect = 3.0e-134
Identity = 229/352 (65.06%), Postives = 289/352 (82.10%), Query Frame = 0


Query: 4   NSKEWWVDTGATCHICANKNMFTSYVLVSSGEQLFMGNSSTSKVEGQGRVIPKMTSGKEL 63
           N KEWW+DTGAT H+C++K MF+++  + +GE++FMGNS+TS+++GQG+VI KMTSGKEL
Sbjct: 332 NPKEWWIDTGATRHVCSDKKMFSTFEPIENGEKVFMGNSATSEIKGQGKVILKMTSGKEL 391

Query: 64  TLNNVLHVPDTHKNLISGSLLSKNGFKLVFVSGKFVFFKNKMYMGMDYLSDGLFKLNVIE 123
           TL NVL+VP+ HKNL+SGSLL+ +GF+LVF S KFV  K+ MY+G  Y+SDG++KLNV+ 
Sbjct: 392 TLTNVLYVPEIHKNLVSGSLLNNHGFRLVFESNKFVLSKSGMYVGKGYMSDGMWKLNVMT 451

Query: 124 VVPKSINNNKVSTFAYIVESF-VWHSRLGHVNFNSLLRLINTKLIPKFTFDTNHRCEVCV 183
           ++    N NK ST  Y++ES  +WH RLGHVN+++L RLIN   IP F  ++NH+CE CV
Sbjct: 452 IIKS--NMNKASTSTYMLESSNLWHGRLGHVNYDTLRRLINLNHIPTFQINSNHKCETCV 511

Query: 184 ESKMTKAPFHSTERLTKPLELIHSDVCDLKFVQTKGGKKYFITFIDDYTRYCYVYLLKSK 243
           E+K+T++ F S ER T+PL+LIHSD+CDLKFVQT+GG KYFITF+DD T+YCYVYLLKSK
Sbjct: 512 EAKLTRSSFQSVERNTEPLDLIHSDICDLKFVQTRGGNKYFITFVDDSTKYCYVYLLKSK 571

Query: 244 DEAIEVFKLYKKEIENQLRTKIKALRSHRGGEYRPTFEQFCPEYGIIHQTIAPYSPQSNG 303
           DEAIE F LYK E+ENQL  KIK LRS RGGEY   F   C ++GIIH+T APYSPQSNG
Sbjct: 572 DEAIEKFVLYKNEVENQLNKKIKVLRSDRGGEYESPFVDTCAQHGIIHETTAPYSPQSNG 631

Query: 304 IVERKNRTLKEMMNAMLISSSLPQNLWGEALLTENYLLNRIPHKKSQNIPYE 355
           + ERKNRTLKEMMNAMLISSSLPQN+WGEA+LT NYLLN++P KK++  PYE
Sbjct: 632 VAERKNRTLKEMMNAMLISSSLPQNMWGEAILTANYLLNKVPKKKAEKTPYE 681

[Close]

BLAST of Cmc01g0026011 vs. NCBI nr
Match: RVW57504.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 486.1 bits (1250), Expect = 2.6e-133
Identity = 229/352 (65.06%), Postives = 287/352 (81.53%), Query Frame = 0


Query: 4   NSKEWWVDTGATCHICANKNMFTSYVLVSSGEQLFMGNSSTSKVEGQGRVIPKMTSGKEL 63
           N KEWW+DTGAT H+C++K MF+++  + +GE++FMGNS+TS+++GQG+VI KMTSGKEL
Sbjct: 123 NPKEWWIDTGATRHVCSDKKMFSTFEPIENGERVFMGNSATSEIKGQGKVILKMTSGKEL 182

Query: 64  TLNNVLHVPDTHKNLISGSLLSKNGFKLVFVSGKFVFFKNKMYMGMDYLSDGLFKLNVIE 123
           TL NVL+VP   KNL+SGSLL+ +GF+LVF S KFV  K+ MY+G  Y+SDG++KLNV+ 
Sbjct: 183 TLTNVLYVPKIRKNLVSGSLLNNHGFRLVFESNKFVLSKSGMYVGKGYMSDGMWKLNVMT 242

Query: 124 VVPKSINNNKVSTFAYIVESF-VWHSRLGHVNFNSLLRLINTKLIPKFTFDTNHRCEVCV 183
           ++    N NK ST  Y++ES  +WH RLGHVN+++L RLIN   IP F  ++NH+CE CV
Sbjct: 243 IIKS--NMNKASTSTYMLESSNLWHGRLGHVNYDTLRRLINLNHIPTFQINSNHKCETCV 302

Query: 184 ESKMTKAPFHSTERLTKPLELIHSDVCDLKFVQTKGGKKYFITFIDDYTRYCYVYLLKSK 243
           E+K+T++ F S ER T+PL+LIHSD+CDLKFVQT+GG KYFITFIDD T+YCYVYLLKSK
Sbjct: 303 EAKLTRSSFQSVERNTEPLDLIHSDICDLKFVQTRGGNKYFITFIDDSTKYCYVYLLKSK 362

Query: 244 DEAIEVFKLYKKEIENQLRTKIKALRSHRGGEYRPTFEQFCPEYGIIHQTIAPYSPQSNG 303
           DEAIE F LYK E+ENQL  KIK LRS RGGEY   F   C ++GIIH+T APYSPQSNG
Sbjct: 363 DEAIEKFVLYKNEVENQLNKKIKVLRSDRGGEYESPFVDICAQHGIIHETTAPYSPQSNG 422

Query: 304 IVERKNRTLKEMMNAMLISSSLPQNLWGEALLTENYLLNRIPHKKSQNIPYE 355
           + ERKNRTLKEMMNAMLISSSLPQN+WGEA+LT NYLLN++P KK++  PYE
Sbjct: 423 VAERKNRTLKEMMNAMLISSSLPQNMWGEAILTANYLLNKVPKKKAEKTPYE 472

[Close]

BLAST of Cmc01g0026011 vs. NCBI nr
Match: RVW43863.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 485.0 bits (1247), Expect = 5.7e-133
Identity = 226/352 (64.20%), Postives = 287/352 (81.53%), Query Frame = 0


Query: 4   NSKEWWVDTGATCHICANKNMFTSYVLVSSGEQLFMGNSSTSKVEGQGRVIPKMTSGKEL 63
           N KEWW+DTGAT H+C++K MF+++  + +GE++FMGNS+TS+++GQG+VI KMTSGKEL
Sbjct: 294 NPKEWWIDTGATRHVCSDKKMFSTFEPIENGEKVFMGNSATSEIKGQGKVILKMTSGKEL 353

Query: 64  TLNNVLHVPDTHKNLISGSLLSKNGFKLVFVSGKFVFFKNKMYMGMDYLSDGLFKLNVIE 123
           TL NVL+VP+  KNL+SGSLL+ +GF+LVF S KF+  K+ MY+G  Y+SDG++KLNV+ 
Sbjct: 354 TLTNVLYVPEIRKNLVSGSLLNNHGFRLVFESNKFILSKSGMYVGKGYMSDGMWKLNVMA 413

Query: 124 VVPKSINNNKVSTFAYIVESF-VWHSRLGHVNFNSLLRLINTKLIPKFTFDTNHRCEVCV 183
           ++    N NK ST  Y++ES  +WH RLGHVN+++L RLIN   IP F  ++NH+CE C 
Sbjct: 414 IIKS--NMNKASTSTYMLESSNLWHGRLGHVNYDTLRRLINLNHIPTFQINSNHKCETCA 473

Query: 184 ESKMTKAPFHSTERLTKPLELIHSDVCDLKFVQTKGGKKYFITFIDDYTRYCYVYLLKSK 243
           E+K+T++ F S ER T+PL+LIHSD+CDLKFVQT+GG KYFITF+DD T+YCYVYLLKSK
Sbjct: 474 EAKLTRSSFQSVERNTEPLDLIHSDICDLKFVQTRGGNKYFITFVDDSTKYCYVYLLKSK 533

Query: 244 DEAIEVFKLYKKEIENQLRTKIKALRSHRGGEYRPTFEQFCPEYGIIHQTIAPYSPQSNG 303
           DEAIE F LYK E+ENQL  KIK LRS RGGEY   F   C ++GIIH+T APYSPQSNG
Sbjct: 534 DEAIEKFVLYKNEVENQLNKKIKVLRSDRGGEYESPFVDICAQHGIIHETTAPYSPQSNG 593

Query: 304 IVERKNRTLKEMMNAMLISSSLPQNLWGEALLTENYLLNRIPHKKSQNIPYE 355
           + ERKNRTLKEMMNAMLISSSLPQN+WGEA+LT NYLLN++P KK++  PYE
Sbjct: 594 VAERKNRTLKEMMNAMLISSSLPQNMWGEAILTANYLLNKVPKKKAEKTPYE 643

[Close]

BLAST of Cmc01g0026011 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 7.7e-56
Identity = 124/340 (36.47%), Postives = 187/340 (55.00%), Query Frame = 0


Query: 7   EWWVDTGATCHICANKNMFTSYVLVSSGEQLFMGNSSTSKVEGQGRVIPKMTSGKELTLN 66
           EW VDT A+ H    +++F  YV    G  + MGN+S SK+ G G +  K   G  L L 
Sbjct: 293 EWVVDTAASHHATPVRDLFCRYVAGDFG-TVKMGNTSYSKIAGIGDICIKTNVGCTLVLK 352

Query: 67  NVLHVPDTHKNLISGSLLSKNGFKLVFVSGKFVFFKNKMYMGMDYLSDGLFKLNVIEVVP 126
           +V HVPD   NLISG  L ++G++  F + K+   K  + +        L++ N      
Sbjct: 353 DVRHVPDLRMNLISGIALDRDGYESYFANQKWRLTKGSLVIAKGVARGTLYRTNA----- 412

Query: 127 KSINNNKVSTFAYIVESFVWHSRLGHVNFNSLLRLINTKLIPKFTFDTNHRCEVCVESKM 186
             I   +++     +   +WH R+GH++   L  L    LI      T   C+ C+  K 
Sbjct: 413 -EICQGELNAAQDEISVDLWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQ 472

Query: 187 TKAPFH-STERLTKPLELIHSDVCDLKFVQTKGGKKYFITFIDDYTRYCYVYLLKSKDEA 246
            +  F  S+ER    L+L++SDVC    +++ GG KYF+TFIDD +R  +VY+LK+KD+ 
Sbjct: 473 HRVSFQTSSERKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQV 532

Query: 247 IEVFKLYKKEIENQLRTKIKALRSHRGGEYRP-TFEQFCPEYGIIHQTIAPYSPQSNGIV 306
            +VF+ +   +E +   K+K LRS  GGEY    FE++C  +GI H+   P +PQ NG+ 
Sbjct: 533 FQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVA 592

Query: 307 ERKNRTLKEMMNAMLISSSLPQNLWGEALLTENYLLNRIP 345
           ER NRT+ E + +ML  + LP++ WGEA+ T  YL+NR P
Sbjct: 593 ERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSP 625

[Close]

BLAST of Cmc01g0026011 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 6.5e-39
Identity = 116/366 (31.69%), Postives = 187/366 (51.09%), Query Frame = 0


Query: 4   NSKEWWVDTGATCHICANKNMFTSYVLVSSGEQLFMGNSSTSKVEGQGRV-IPKMTSGKE 63
           N+  W +D+GAT HI ++ N  + +   + G+ + + + ST  +   G   +P  TS + 
Sbjct: 306 NANNWLLDSGATHHITSDFNNLSFHQPYTGGDDVMIADGSTIPITHTGSASLP--TSSRS 365

Query: 64  LTLNNVLHVPDTHKNLIS-GSLLSKNGFKLVFVSGKFVFFKNKMYMGMDYL----SDGLF 123
           L LN VL+VP+ HKNLIS   L + N   + F    F      +  G+  L     D L+
Sbjct: 366 LDLNKVLYVPNIHKNLISVYRLCNTNRVSVEFFPASFQV--KDLNTGVPLLQGKTKDELY 425

Query: 124 KLNVIEVVPKSINNNKVSTFAYIVESFV---WHSRLGHVNFNSLLRLINTKLIPKFTFDT 183
           +  +        ++  VS FA          WHSRLGH +   L  +I+   +P    + 
Sbjct: 426 EWPI-------ASSQAVSMFASPCSKATHSSWHSRLGHPSLAILNSVISNHSLP--VLNP 485

Query: 184 NHR---CEVCVESKMTKAPF-HSTERLTKPLELIHSDVCDLKFVQTKGGKKYFITFIDDY 243
           +H+   C  C  +K  K PF +ST   +KPLE I+SDV     +      +Y++ F+D +
Sbjct: 486 SHKLLSCSDCFINKSHKVPFSNSTITSSKPLEYIYSDVWSSPILSI-DNYRYYVIFVDHF 545

Query: 244 TRYCYVYLLKSKDEAIEVFKLYKKEIENQLRTKIKALRSHRGGEYRPTFEQFCPEYGIIH 303
           TRY ++Y LK K +  + F ++K  +EN+ +T+I  L S  GGE+      +  ++GI H
Sbjct: 546 TRYTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNGGEF-VVLRDYLSQHGISH 605

Query: 304 QTIAPYSPQSNGIVERKNRTLKEMMNAMLISSSLPQNLWGEALLTENYLLNRIPHKKSQ- 356
            T  P++P+ NG+ ERK+R + EM   +L  +S+P+  W  A     YL+NR+P    Q 
Sbjct: 606 FTSPPHTPEHNGLSERKHRHIVEMGLTLLSHASVPKTYWPYAFSVAVYLINRLPTPLLQL 656

[Close]

BLAST of Cmc01g0026011 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.5e-38
Identity = 112/362 (30.94%), Postives = 185/362 (51.10%), Query Frame = 0


Query: 4   NSKEWWVDTGATCHICANKNMFTSYVLVSSGEQLFMGNSSTSKVEGQGRVIPKMTSGKEL 63
           +S  W +D+GAT HI ++ N  + +   + G+ + + + ST  +   G      T  + L
Sbjct: 327 SSNNWLLDSGATHHITSDFNNLSLHQPYTGGDDVMVADGSTIPISHTGST-SLSTKSRPL 386

Query: 64  TLNNVLHVPDTHKNLIS-GSLLSKNGFKLVFVSGKFVFFKNKMYMGMDYL----SDGLFK 123
            L+N+L+VP+ HKNLIS   L + NG  + F    F      +  G+  L     D L++
Sbjct: 387 NLHNILYVPNIHKNLISVYRLCNANGVSVEFFPASFQV--KDLNTGVPLLQGKTKDELYE 446

Query: 124 LNVIEVVPKSINNNKVSTFAYIVESFVWHSRLGHVNFNSLLRLINTKLIPKFTFDTNHR- 183
             +    P S+  +  S   +      WH+RLGH   + L  +I+   +     + +H+ 
Sbjct: 447 WPIASSQPVSLFASPSSKATH----SSWHARLGHPAPSILNSVISNYSLS--VLNPSHKF 506

Query: 184 --CEVCVESKMTKAPF-HSTERLTKPLELIHSDVCDLKFVQTKGGKKYFITFIDDYTRYC 243
             C  C+ +K  K PF  ST   T+PLE I+SDV     + +    +Y++ F+D +TRY 
Sbjct: 507 LSCSDCLINKSNKVPFSQSTINSTRPLEYIYSDVWSSP-ILSHDNYRYYVIFVDHFTRYT 566

Query: 244 YVYLLKSKDEAIEVFKLYKKEIENQLRTKIKALRSHRGGEYRPTFEQFCPEYGIIHQTIA 303
           ++Y LK K +  E F  +K  +EN+ +T+I    S  GGE+   +E F  ++GI H T  
Sbjct: 567 WLYPLKQKSQVKETFITFKNLLENRFQTRIGTFYSDNGGEFVALWEYF-SQHGISHLTSP 626

Query: 304 PYSPQSNGIVERKNRTLKEMMNAMLISSSLPQNLWGEALLTENYLLNRIPHKKSQ-NIPY 356
           P++P+ NG+ ERK+R + E    +L  +S+P+  W  A     YL+NR+P    Q   P+
Sbjct: 627 PHTPEHNGLSERKHRHIVETGLTLLSHASIPKTYWPYAFAVAVYLINRLPTPLLQLESPF 677

[Close]

BLAST of Cmc01g0026011 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 156.4 bits (394), Expect = 6.1e-37
Identity = 104/357 (29.13%), Postives = 167/357 (46.78%), Query Frame = 0


Query: 10  VDTGATCHICANKNMFTSYVLVSSGEQLFMGNSSTSKVEGQGRVIPKMTSGKELTLNNVL 69
           +D+GA+ H+  +++++T  V V    ++ +       +    R I ++ +  E+TL +VL
Sbjct: 291 LDSGASDHLINDESLYTDSVEVVPPLKIAVAKQG-EFIYATKRGIVRLRNDHEITLEDVL 350

Query: 70  HVPDTHKNLISGSLLSKNGFKLVFVSGKFVFFKNKMYMGMDYLSDGLFKLNVIEVVPKSI 129
              +   NL+S   L + G  + F        KN + +  +  S  L  + VI     SI
Sbjct: 351 FCKEAAGNLMSVKRLQEAGMSIEFDKSGVTISKNGLMVVKN--SGMLNNVPVINFQAYSI 410

Query: 130 NNNKVSTFAYIVESFVWHSRLGHVNFNSLLRLINTKLIPKFTFDTN-----HRCEVCVES 189
           N    + F       +WH R GH++   LL +    +    +   N       CE C+  
Sbjct: 411 NAKHKNNFR------LWHERFGHISDGKLLEIKRKNMFSDQSLLNNLELSCEICEPCLNG 470

Query: 190 KMTKAPFHSTE---RLTKPLELIHSDVCDLKFVQTKGGKKYFITFIDDYTRYCYVYLLKS 249
           K  + PF   +    + +PL ++HSDVC      T   K YF+ F+D +T YC  YL+K 
Sbjct: 471 KQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKY 530

Query: 250 KDEAIEVFKLYKKEIENQLRTKIKALRSHRGGEYRPT-FEQFCPEYGIIHQTIAPYSPQS 309
           K +   +F+ +  + E     K+  L    G EY      QFC + GI +    P++PQ 
Sbjct: 531 KSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQL 590

Query: 310 NGIVERKNRTLKEMMNAMLISSSLPQNLWGEALLTENYLLNRIPHK---KSQNIPYE 355
           NG+ ER  RT+ E    M+  + L ++ WGEA+LT  YL+NRIP +    S   PYE
Sbjct: 591 NGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYE 638

[Close]

BLAST of Cmc01g0026011 vs. ExPASy Swiss-Prot
Match: Q12491 (Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-B PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.5e-14
Identity = 89/358 (24.86%), Postives = 142/358 (39.66%), Query Frame = 0


Query: 27  SYVLVSSGEQLFMG--NSSTSKVEGQGRVIPKMTSGK--------ELTLNNVLHVPDTHK 86
           S  LV S   L     NS  + V+ Q + IP    G           T    LH P+   
Sbjct: 461 SQTLVRSAHYLHHATPNSEINIVDAQKQDIPINAIGNLHFNFQNGTKTSIKALHTPNIAY 520

Query: 87  NLISGSLLSKNGFKLVF-----------VSGKFVFFKNKMYMGMDYLSDGLFKLNVIEVV 146
           +L+S S L+       F           V    V   +  ++   YL         I  V
Sbjct: 521 DLLSLSELANQNITACFTRNTLERSDGTVLAPIVKHGDFYWLSKKYLIPSHISKLTINNV 580

Query: 147 PKSINNNKVSTFAYIVESFVWHSRLGHVNFNSLLRLINTKLIP-------KFTFDTNHRC 206
            KS + NK   + Y     + H  LGH NF S+ + +    +        +++  + ++C
Sbjct: 581 NKSKSVNK---YPYP----LIHRMLGHANFRSIQKSLKKNAVTYLKESDIEWSNASTYQC 640

Query: 207 EVCVESKMTKAPFHSTERLT-----KPLELIHSDVCDLKFVQTKGGKKYFITFIDDYTRY 266
             C+  K TK       RL      +P + +H+D+        K    YFI+F D+ TR+
Sbjct: 641 PDCLIGKSTKHRHVKGSRLKYQESYEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKTRF 700

Query: 267 CYVYLL--KSKDEAIEVFKLYKKEIENQLRTKIKALRSHRGGEY-RPTFEQFCPEYGIIH 326
            +VY L  + ++  + VF      I+NQ   ++  ++  RG EY   T  +F    GI  
Sbjct: 701 QWVYPLHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITA 760

Query: 327 QTIAPYSPQSNGIVERKNRTLKEMMNAMLISSSLPQNLWGEALLTENYLLNRIPHKKS 349
                   +++G+ ER NRTL      +L  S LP +LW  A+     + N +   K+
Sbjct: 761 CYTTTADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSLVSPKN 811

[Close]

BLAST of Cmc01g0026011 vs. ExPASy TrEMBL
Match: A0A438CSS8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_823 PE=4 SV=1)

HSP 1 Score: 525.4 bits (1352), Expect = 1.8e-145
Identity = 251/335 (74.93%), Postives = 291/335 (86.87%), Query Frame = 0


Query: 1   MVDNSKEWWVDTGATCHICANKNMFTSYVLVSSGEQLFMGNSSTSKVEGQGRVIPKMTSG 60
           +V N+KEWWVDTGATCHIC+NK MF++Y  V   E+LFMGNSS+SKVEG+G+VI KMTSG
Sbjct: 301 IVGNTKEWWVDTGATCHICSNKWMFSTYKPVEQNEELFMGNSSSSKVEGRGKVILKMTSG 360

Query: 61  KELTLNNVLHVPDTHKNLISGSLLSKNGFKLVFVSGKFVFFKNKMYMGMDYLSDGLFKLN 120
           KELTLN+VLHVPD HKNL+SGSLLSKNGFKLVFVS KFV  KN+M++G  YLSDGLFK+N
Sbjct: 361 KELTLNDVLHVPDIHKNLVSGSLLSKNGFKLVFVSDKFVLTKNEMFVGKGYLSDGLFKMN 420

Query: 121 VIEVVPKSINNNKVSTFAYIVESF-VWHSRLGHVNFNSLLRLINTKLIPKFTFDTNHRCE 180
           V+ VVPKSINNNK+ + AY++ES  +WH RLGHVN+++L RLI+   +PKF  DTNH+CE
Sbjct: 421 VMTVVPKSINNNKIDSSAYLLESSNIWHGRLGHVNYDTLRRLIHLDYLPKFNIDTNHKCE 480

Query: 181 VCVESKMTKAPFHSTERLTKPLELIHSDVCDLKFVQTKGGKKYFITFIDDYTRYCYVYLL 240
            CVESK+TK PFHS ER T+PL+LIH+D+CDLKFVQT+GGKKYFITFIDD TRYCYVYLL
Sbjct: 481 TCVESKLTKVPFHSVERSTEPLDLIHNDICDLKFVQTRGGKKYFITFIDDCTRYCYVYLL 540

Query: 241 KSKDEAIEVFKLYKKEIENQLRTKIKALRSHRGGEYRPTFEQFCPEYGIIHQTIAPYSPQ 300
           +SKDEAIE+FK YK E+ENQL  KIKA+RS RGGEY   FE+FC E+GIIHQT APYSPQ
Sbjct: 541 QSKDEAIEMFKHYKNEVENQLSKKIKAIRSDRGGEYESLFEEFCLEHGIIHQTTAPYSPQ 600

Query: 301 SNGIVERKNRTLKEMMNAMLISSSLPQNLWGEALL 335
           SNGI E KNRTLKEMMNAML+SS LPQNLWGEALL
Sbjct: 601 SNGIAECKNRTLKEMMNAMLLSSGLPQNLWGEALL 635

[Close]

BLAST of Cmc01g0026011 vs. ExPASy TrEMBL
Match: A0A2N9F9L9 (Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS11453 PE=4 SV=1)

HSP 1 Score: 513.8 bits (1322), Expect = 5.6e-142
Identity = 246/355 (69.30%), Postives = 292/355 (82.25%), Query Frame = 0


Query: 1   MVDNSKEWWVDTGATCHICANKNMFTSYVLVSSGEQLFMGNSSTSKVEGQGRVIPKMTSG 60
           +V N+ EWWVDTGAT HIC++K MF++Y  V  GEQLFMGNSSTSKVEG+G+V+ KM+SG
Sbjct: 11  LVKNTNEWWVDTGATRHICSDKKMFSTYQSVGYGEQLFMGNSSTSKVEGKGKVVLKMSSG 70

Query: 61  KELTLNNVLHVPDTHKNLISGSLLSKNGFKLVFVSGKFVFFKNKMYMGMDYLSDGLFKLN 120
           KELTLN+VLHVPD  KNL+SGSLLSKNGF+LVF S KF+  K+ M +G  YLSDGLFK+N
Sbjct: 71  KELTLNDVLHVPDIRKNLVSGSLLSKNGFQLVFESDKFLLTKSGMLVGKGYLSDGLFKMN 130

Query: 121 VIEVVPKSINNNKVSTFAYIVESF-VWHSRLGHVNFNSLLRLINTKLIPKFTFDTNHRCE 180
           V+ +VP  IN NK  + AY++ES  VWH RLGHVNF +L RL+N  L+PKF  DTNH+CE
Sbjct: 131 VMTIVP--INENKNKSSAYLLESSNVWHGRLGHVNFGTLHRLVNLNLLPKFQIDTNHKCE 190

Query: 181 VCVESKMTKAPFHSTERLTKPLELIHSDVCDLKFVQTKGGKKYFITFIDDYTRYCYVYLL 240
            CVE+K+T+ PFHS ER + PLELIHSDVCDLKFVQT+GG+KYF+TFIDD TRYCYVYLL
Sbjct: 191 TCVEAKLTRTPFHSIERSSDPLELIHSDVCDLKFVQTRGGRKYFVTFIDDCTRYCYVYLL 250

Query: 241 KSKDEAIEVFKLYKKEIENQLRTKIKALRSHRGGEYRPTFEQFCPEYGIIHQTIAPYSPQ 300
           +SKDEA+E F  YKKE+ENQL  KIK LRS RGGEY   F +FC ++GI+HQT APYSPQ
Sbjct: 251 RSKDEALESFIHYKKEVENQLNKKIKVLRSDRGGEYESPFGEFCSQHGIVHQTTAPYSPQ 310

Query: 301 SNGIVERKNRTLKEMMNAMLISSSLPQNLWGEALLTENYLLNRIPHKKSQNIPYE 355
            NG+ ERKNRTLKEMMNAMLISS LPQNLWGEA+L+ NY+LN++P KK    PYE
Sbjct: 311 QNGVAERKNRTLKEMMNAMLISSGLPQNLWGEAILSANYILNKLPQKKLDKTPYE 363

[Close]

BLAST of Cmc01g0026011 vs. ExPASy TrEMBL
Match: A0A2N9HDE2 (Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS37572 PE=4 SV=1)

HSP 1 Score: 510.8 bits (1314), Expect = 4.7e-141
Identity = 245/355 (69.01%), Postives = 291/355 (81.97%), Query Frame = 0


Query: 1   MVDNSKEWWVDTGATCHICANKNMFTSYVLVSSGEQLFMGNSSTSKVEGQGRVIPKMTSG 60
           +V N+ EWWVDTGAT HIC++K MF++Y  V  GEQLFMGNSSTSKVEG+G+V+ KM+SG
Sbjct: 11  LVKNTNEWWVDTGATRHICSDKKMFSTYQSVGYGEQLFMGNSSTSKVEGKGKVVLKMSSG 70

Query: 61  KELTLNNVLHVPDTHKNLISGSLLSKNGFKLVFVSGKFVFFKNKMYMGMDYLSDGLFKLN 120
           KELTLN+VLHVPD  KNL+SGSLLSKNGF+LVF S KF+  K+ M +G  YLSDGLFK+N
Sbjct: 71  KELTLNDVLHVPDIRKNLVSGSLLSKNGFQLVFESDKFLLTKSGMLVGKGYLSDGLFKMN 130

Query: 121 VIEVVPKSINNNKVSTFAYIVESF-VWHSRLGHVNFNSLLRLINTKLIPKFTFDTNHRCE 180
           V+ +VP  IN NK  + AY++ES  VWH RLGHVNF +L RL+N  L+PKF  DTNH+CE
Sbjct: 131 VMTIVP--INENKNKSSAYLLESSNVWHGRLGHVNFGTLHRLVNLNLLPKFQIDTNHKCE 190

Query: 181 VCVESKMTKAPFHSTERLTKPLELIHSDVCDLKFVQTKGGKKYFITFIDDYTRYCYVYLL 240
            CVE+K+T+  FHS ER + PLELIHSDVCDLKFVQT+GG+KYF+TFIDD TRYCYVYLL
Sbjct: 191 TCVEAKLTRTSFHSIERSSDPLELIHSDVCDLKFVQTRGGRKYFVTFIDDCTRYCYVYLL 250

Query: 241 KSKDEAIEVFKLYKKEIENQLRTKIKALRSHRGGEYRPTFEQFCPEYGIIHQTIAPYSPQ 300
           +SKDEA+E F  YKKE+ENQL  KIK LRS RGGEY   F +FC ++GI+HQT APYSPQ
Sbjct: 251 RSKDEALESFIHYKKEVENQLNKKIKVLRSDRGGEYESPFGEFCSQHGIVHQTTAPYSPQ 310

Query: 301 SNGIVERKNRTLKEMMNAMLISSSLPQNLWGEALLTENYLLNRIPHKKSQNIPYE 355
            NG+ ERKNRTLKEMMNAMLISS LPQNLWGEA+L+ NY+LN++P KK    PYE
Sbjct: 311 QNGVAERKNRTLKEMMNAMLISSGLPQNLWGEAILSANYILNKLPQKKLDKTPYE 363

[Close]

BLAST of Cmc01g0026011 vs. ExPASy TrEMBL
Match: A0A2N9GRE4 (Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS29910 PE=4 SV=1)

HSP 1 Score: 509.2 bits (1310), Expect = 1.4e-140
Identity = 245/355 (69.01%), Postives = 290/355 (81.69%), Query Frame = 0


Query: 1   MVDNSKEWWVDTGATCHICANKNMFTSYVLVSSGEQLFMGNSSTSKVEGQGRVIPKMTSG 60
           +V N+ EWWVDTGAT HIC++K MF++Y  V  GEQLFMGNSSTSKVEG+G+V+ KM+SG
Sbjct: 11  LVKNTNEWWVDTGATRHICSDKKMFSTYQSVGYGEQLFMGNSSTSKVEGKGKVVLKMSSG 70

Query: 61  KELTLNNVLHVPDTHKNLISGSLLSKNGFKLVFVSGKFVFFKNKMYMGMDYLSDGLFKLN 120
           KELTLN+VLHVPD  KNL+SGSLLSKNGF+LVF S KF+  K+ M +G  YLSDGLFK+N
Sbjct: 71  KELTLNDVLHVPDIRKNLVSGSLLSKNGFQLVFESDKFLLTKSGMLVGKGYLSDGLFKMN 130

Query: 121 VIEVVPKSINNNKVSTFAYIVESF-VWHSRLGHVNFNSLLRLINTKLIPKFTFDTNHRCE 180
           V+ +VP  IN NK  + AY++ES  VWH RLGHVNF +L RL+N  L+PKF  DTNH+CE
Sbjct: 131 VMTIVP--INENKNKSSAYLLESSNVWHGRLGHVNFGTLHRLVNLNLLPKFQIDTNHKCE 190

Query: 181 VCVESKMTKAPFHSTERLTKPLELIHSDVCDLKFVQTKGGKKYFITFIDDYTRYCYVYLL 240
            CVE+K+T+  FHS ER + PLELIHSDVCDLKFVQT+GG+KYF+TFIDD TRYCYVYLL
Sbjct: 191 TCVEAKLTRTSFHSIERSSDPLELIHSDVCDLKFVQTRGGRKYFVTFIDDCTRYCYVYLL 250

Query: 241 KSKDEAIEVFKLYKKEIENQLRTKIKALRSHRGGEYRPTFEQFCPEYGIIHQTIAPYSPQ 300
           +SKDEA+E F  YKKE+ENQL  KIK LRS RGGEY   F  FC ++GI+HQT APYSPQ
Sbjct: 251 RSKDEALESFIHYKKEVENQLNKKIKVLRSDRGGEYESPFGGFCSQHGIVHQTTAPYSPQ 310

Query: 301 SNGIVERKNRTLKEMMNAMLISSSLPQNLWGEALLTENYLLNRIPHKKSQNIPYE 355
            NG+ ERKNRTLKEMMNAMLISS LPQNLWGEA+L+ NY+LN++P KK    PYE
Sbjct: 311 QNGVAERKNRTLKEMMNAMLISSGLPQNLWGEAILSANYILNKLPQKKLDKTPYE 363

[Close]

BLAST of Cmc01g0026011 vs. ExPASy TrEMBL
Match: A0A2N9IDC7 (Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS49793 PE=4 SV=1)

HSP 1 Score: 508.1 bits (1307), Expect = 3.1e-140
Identity = 244/355 (68.73%), Postives = 289/355 (81.41%), Query Frame = 0


Query: 1   MVDNSKEWWVDTGATCHICANKNMFTSYVLVSSGEQLFMGNSSTSKVEGQGRVIPKMTSG 60
           +V N+ EWWVDTGAT HIC++K MF++Y  V  GEQLFMGNSSTSKVEG+G+V+ KM+SG
Sbjct: 11  LVKNTNEWWVDTGATRHICSDKKMFSTYQSVGYGEQLFMGNSSTSKVEGKGKVVLKMSSG 70

Query: 61  KELTLNNVLHVPDTHKNLISGSLLSKNGFKLVFVSGKFVFFKNKMYMGMDYLSDGLFKLN 120
           KELTLN+VLHVPD  KNL+SGSLLSKNGF+LVF S KF+  K+ M +G  YLSDGLFK+N
Sbjct: 71  KELTLNDVLHVPDIRKNLVSGSLLSKNGFQLVFESDKFLLTKSGMLVGKGYLSDGLFKMN 130

Query: 121 VIEVVPKSINNNKVSTFAYIVESF-VWHSRLGHVNFNSLLRLINTKLIPKFTFDTNHRCE 180
           V+ +VP  IN NK  + AY++ES  VWH RLGHVNF +L RL+N  L+PKF  DTNH+CE
Sbjct: 131 VMTIVP--INENKNKSSAYLLESSNVWHGRLGHVNFGTLHRLVNLNLLPKFQIDTNHKCE 190

Query: 181 VCVESKMTKAPFHSTERLTKPLELIHSDVCDLKFVQTKGGKKYFITFIDDYTRYCYVYLL 240
            CVE+K+T+  FHS ER   PLELIHSDVCDLKFVQT+GG+KYF+TFIDD T+YCYVYLL
Sbjct: 191 TCVEAKLTRTSFHSIERSNDPLELIHSDVCDLKFVQTRGGRKYFVTFIDDCTKYCYVYLL 250

Query: 241 KSKDEAIEVFKLYKKEIENQLRTKIKALRSHRGGEYRPTFEQFCPEYGIIHQTIAPYSPQ 300
           +SKDEA+E F  YKKE+ENQL  KIK LRS RGGEY   F +FC ++GI+HQT APYSPQ
Sbjct: 251 RSKDEALESFIHYKKEVENQLNKKIKVLRSDRGGEYESPFGEFCSQHGIVHQTTAPYSPQ 310

Query: 301 SNGIVERKNRTLKEMMNAMLISSSLPQNLWGEALLTENYLLNRIPHKKSQNIPYE 355
            NG+ ERKNRTLKEMMNAMLISS LPQNLWGEA+L  NY+LN++P KK    PYE
Sbjct: 311 QNGVAERKNRTLKEMMNAMLISSGLPQNLWGEAILFANYILNKLPQKKLDKTPYE 363

The following BLAST results are available for this feature:

BLAST of Cmc01g0026011 vs. NCBI nr


Match Name	E-value	Identity	Description
RVW26252.1	3.8e-145	74.93	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
CAN66576.1	6.1e-135	73.75	hypothetical protein VITISV_016964 [Vitis vinifera]	[more]
RVX20631.1	3.0e-134	65.06	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW57504.1	2.6e-133	65.06	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW43863.1	5.7e-133	64.20	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]

BLAST of Cmc01g0026011 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	7.7e-56	36.47	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	6.5e-39	31.69	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	1.5e-38	30.94	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P04146	6.1e-37	29.13	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q12491	1.5e-14	24.86	Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc01g0026011 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438CSS8	1.8e-145	74.93	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A2N9F9L9	5.6e-142	69.30	Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB...	[more]
A0A2N9HDE2	4.7e-141	69.01	Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB...	[more]
A0A2N9GRE4	1.4e-140	69.01	Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB...	[more]
A0A2N9IDC7	3.1e-140	68.73	Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB...	[more]

BLAST of Cmc01g0026011 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 127..186 e-value: 1.3E-14 score: 53.8
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 198..298 e-value: 8.5E-16 score: 58.1
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 196..355 score: 25.530264
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 193..355 e-value: 3.9E-41 score: 142.5
None	No IPR available	PANTHER	PTHR47592	PBF68 PROTEIN	coord: 1..108
None	No IPR available	PANTHER	PTHR47592:SF5	OS08G0421300 PROTEIN	coord: 1..108
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 196..354

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0026011.1	Cmc01g0026011.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding