Cmc01g0020991 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0020991
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr01: 19524333 .. 19524848 (-)
RNA-Seq Expression	Cmc01g0020991
Synteny	Cmc01g0020991

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTGTGTATGGTTCTAAGGATTTGATTCTTACAAGATACATAGACTCTGACTTTCAGACTGATAGAGATTCTAGGAAATCTACTTCAGGTTCAGTGTTCACTCTTAACGGAGGAGCTGTAGTTTGGAGAAGTATCAAGCAAGGATGTATTGCTGACTCCACTATGGAGGCAGAGTATGTTGCAGCTTGTGAAGCTGCCAAAGAGGCTGTTTGGCTTAGAAAATTCTTGATTGATTTGGAAGTAGTTCCAAACATGTCAAAGCCAATTACTCTTTACTGTGATAATAGTGGGACTGTGGTTAATTCTAGGGAGCGCAGAAGTCACAAGCGTGGAAAGCATATTGAGCGCAAGTATCACCTGATTCGAGAGATAGAACGTCGAGGGGATGTGATCGTCACACAGATAGCTTCGACACACAATGTTGCTGATCCGTTTACAAAGCCCCTCACGGCTAAGGTGTTTGAGGGTCACCTAGAGAGTCTGGGTCTACGTGACATGCCACATTTAATCTAG

mRNA sequence

ATGCTTGTGTATGGTTCTAAGGATTTGATTCTTACAAGATACATAGACTCTGACTTTCAGACTGATAGAGATTCTAGGAAATCTACTTCAGGTTCAGTGTTCACTCTTAACGGAGGAGCTGTAGTTTGGAGAAGTATCAAGCAAGGATGTATTGCTGACTCCACTATGGAGGCAGAGTATGTTGCAGCTTGTGAAGCTGCCAAAGAGGCTGTTTGGCTTAGAAAATTCTTGATTGATTTGGAAGTAGTTCCAAACATGTCAAAGCCAATTACTCTTTACTGTGATAATAGTGGGACTGTGGTTAATTCTAGGGAGCGCAGAAGTCACAAGCGTGGAAAGCATATTGAGCGCAAGTATCACCTGATTCGAGAGATAGAACGTCGAGGGGATGTGATCGTCACACAGATAGCTTCGACACACAATGTTGCTGATCCGTTTACAAAGCCCCTCACGGCTAAGGTGTTTGAGGGTCACCTAGAGAGTCTGGGTCTACGTGACATGCCACATTTAATCTAG

Coding sequence (CDS)

ATGCTTGTGTATGGTTCTAAGGATTTGATTCTTACAAGATACATAGACTCTGACTTTCAGACTGATAGAGATTCTAGGAAATCTACTTCAGGTTCAGTGTTCACTCTTAACGGAGGAGCTGTAGTTTGGAGAAGTATCAAGCAAGGATGTATTGCTGACTCCACTATGGAGGCAGAGTATGTTGCAGCTTGTGAAGCTGCCAAAGAGGCTGTTTGGCTTAGAAAATTCTTGATTGATTTGGAAGTAGTTCCAAACATGTCAAAGCCAATTACTCTTTACTGTGATAATAGTGGGACTGTGGTTAATTCTAGGGAGCGCAGAAGTCACAAGCGTGGAAAGCATATTGAGCGCAAGTATCACCTGATTCGAGAGATAGAACGTCGAGGGGATGTGATCGTCACACAGATAGCTTCGACACACAATGTTGCTGATCCGTTTACAAAGCCCCTCACGGCTAAGGTGTTTGAGGGTCACCTAGAGAGTCTGGGTCTACGTGACATGCCACATTTAATCTAG

Protein sequence

MLVYGSKDLILTRYIDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLIDLEVVPNMSKPITLYCDNSGTVVNSRERRSHKRGKHIERKYHLIREIERRGDVIVTQIASTHNVADPFTKPLTAKVFEGHLESLGLRDMPHLI

Homology

[Close]

BLAST of Cmc01g0020991 vs. NCBI nr
Match: KAA0062799.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 327.8 bits (839), Expect = 5.6e-86
Identity = 163/171 (95.32%), Postives = 164/171 (95.91%), Query Frame = 0


Query: 1   MLVYGSKDLILTRYIDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEY 60
           MLVYGSKDLILTRYIDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEY
Sbjct: 390 MLVYGSKDLILTRYIDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEY 449

Query: 61  VAACEAAKEAVWLRKFLIDLEVVPNMSKPITLYCDNSGTVVNSRERRSHKRGKHIERKYH 120
           +AACEAAKEAVWLRKFLIDLEVVPNM KPITLYCDNSG VVNSRE RSHKRGKHIERKYH
Sbjct: 450 LAACEAAKEAVWLRKFLIDLEVVPNMLKPITLYCDNSGAVVNSREPRSHKRGKHIERKYH 509

Query: 121 LIREIERRGDVIVTQIASTHNVADPFTKPLTAKVFEGHLESLGLRDMPHLI 172
           LIREIE RGDVIVTQIA THNV DPFTKPLTAKVFEGHL SLGLRDMPHLI
Sbjct: 510 LIREIEHRGDVIVTQIALTHNVGDPFTKPLTAKVFEGHLGSLGLRDMPHLI 560

[Close]

BLAST of Cmc01g0020991 vs. NCBI nr
Match: TYJ96755.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 327.8 bits (839), Expect = 5.6e-86
Identity = 163/171 (95.32%), Postives = 164/171 (95.91%), Query Frame = 0


Query: 1   MLVYGSKDLILTRYIDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEY 60
           MLVYGSKDLILTRYIDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEY
Sbjct: 611 MLVYGSKDLILTRYIDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEY 670

Query: 61  VAACEAAKEAVWLRKFLIDLEVVPNMSKPITLYCDNSGTVVNSRERRSHKRGKHIERKYH 120
           +AACEAAKEAVWLRKFLIDLEVVPNM KPITLYCDNSG VVNSRE RSHKRGKHIERKYH
Sbjct: 671 LAACEAAKEAVWLRKFLIDLEVVPNMLKPITLYCDNSGAVVNSREPRSHKRGKHIERKYH 730

Query: 121 LIREIERRGDVIVTQIASTHNVADPFTKPLTAKVFEGHLESLGLRDMPHLI 172
           LIREIE RGDVIVTQIA THNV DPFTKPLTAKVFEGHL SLGLRDMPHLI
Sbjct: 731 LIREIEHRGDVIVTQIALTHNVGDPFTKPLTAKVFEGHLGSLGLRDMPHLI 781

[Close]

BLAST of Cmc01g0020991 vs. NCBI nr
Match: KAA0046416.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 323.9 bits (829), Expect = 8.1e-85
Identity = 161/170 (94.71%), Postives = 161/170 (94.71%), Query Frame = 0


Query: 1   MLVYGSKDLILTRYIDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEY 60
           MLVYGSKDLILT Y DSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCI DSTMEAEY
Sbjct: 339 MLVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIVDSTMEAEY 398

Query: 61  VAACEAAKEAVWLRKFLIDLEVVPNMSKPITLYCDNSGTVVNSRERRSHKRGKHIERKYH 120
           VAACEAAKEAVWLR FLIDLEVVPNMSKPITLYCDNSG V NSRE RSHKRGKHIERKYH
Sbjct: 399 VAACEAAKEAVWLRNFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHKRGKHIERKYH 458

Query: 121 LIREIERRGDVIVTQIASTHNVADPFTKPLTAKVFEGHLESLGLRDMPHL 171
           LIREI  RGDVIVTQIASTHNVADPFTKPLTAKVFEGHLESLGLRDMPHL
Sbjct: 459 LIREIVHRGDVIVTQIASTHNVADPFTKPLTAKVFEGHLESLGLRDMPHL 508

[Close]

BLAST of Cmc01g0020991 vs. NCBI nr
Match: TYJ97618.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 323.6 bits (828), Expect = 1.1e-84
Identity = 161/169 (95.27%), Postives = 161/169 (95.27%), Query Frame = 0


Query: 2    LVYGSKDLILTRYIDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 61
            LVYGSKDLILT Y DSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV
Sbjct: 959  LVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 1018

Query: 62   AACEAAKEAVWLRKFLIDLEVVPNMSKPITLYCDNSGTVVNSRERRSHKRGKHIERKYHL 121
            AACEAAKEAVWLR FLIDLEVVPNMSKPITLYCDNSG V NSRE RSHKRGKHIERKYHL
Sbjct: 1019 AACEAAKEAVWLRNFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHKRGKHIERKYHL 1078

Query: 122  IREIERRGDVIVTQIASTHNVADPFTKPLTAKVFEGHLESLGLRDMPHL 171
            IREI  RGDVIVTQIASTHNVADPFTKPLTAKVFEGHLESLGLRDMPHL
Sbjct: 1079 IREIVHRGDVIVTQIASTHNVADPFTKPLTAKVFEGHLESLGLRDMPHL 1127

[Close]

BLAST of Cmc01g0020991 vs. NCBI nr
Match: KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 323.6 bits (828), Expect = 1.1e-84
Identity = 161/169 (95.27%), Postives = 161/169 (95.27%), Query Frame = 0


Query: 2    LVYGSKDLILTRYIDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 61
            LVYGSKDLILT Y DSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV
Sbjct: 1173 LVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 1232

Query: 62   AACEAAKEAVWLRKFLIDLEVVPNMSKPITLYCDNSGTVVNSRERRSHKRGKHIERKYHL 121
            AACEAAKEAVWLR FLIDLEVVPNMSKPITLYCDNSG V NSRE RSHKRGKHIERKYHL
Sbjct: 1233 AACEAAKEAVWLRNFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHKRGKHIERKYHL 1292

Query: 122  IREIERRGDVIVTQIASTHNVADPFTKPLTAKVFEGHLESLGLRDMPHL 171
            IREI  RGDVIVTQIASTHNVADPFTKPLTAKVFEGHLESLGLRDMPHL
Sbjct: 1293 IREIVHRGDVIVTQIASTHNVADPFTKPLTAKVFEGHLESLGLRDMPHL 1341

[Close]

BLAST of Cmc01g0020991 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 8.0e-27
Identity = 66/163 (40.49%), Postives = 96/163 (58.90%), Query Frame = 0


Query: 2    LVYGSKDLILTRYIDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 61
            L +G  D IL  Y D+D   D D+RKS++G +FT +GGA+ W+S  Q C+A ST EAEY+
Sbjct: 1166 LCFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYI 1225

Query: 62   AACEAAKEAVWLRKFLIDLEVVPNMSKPITLYCDNSGTVVNSRERRSHKRGKHIERKYHL 121
            AA E  KE +WL++FL +L +     K   +YCD+   +  S+    H R KHI+ +YH 
Sbjct: 1226 AATETGKEMIWLKRFLQELGL---HQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHW 1285

Query: 122  IREIERRGDVIVTQIASTHNVADPFTKPLTAKVFEGHLESLGL 165
            IRE+     + V +I++  N AD  TK +    FE   E +G+
Sbjct: 1286 IREMVDDESLKVLKISTNENPADMLTKVVPRNKFELCKELVGM 1325

[Close]

BLAST of Cmc01g0020991 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 101.3 bits (251), Expect = 1.1e-20
Identity = 56/152 (36.84%), Postives = 85/152 (55.92%), Query Frame = 0


Query: 14   YIDSDFQTDRDSRKSTSGSVFTL-NGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVW 73
            Y+DSD+      RKST+G +F + +   + W + +Q  +A S+ EAEY+A  EA +EA+W
Sbjct: 1251 YVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALW 1310

Query: 74   LRKFLIDLEVVPNMSKPITLYCDNSGTVVNSRERRSHKRGKHIERKYHLIREIERRGDVI 133
            L+  L  + +   +  PI +Y DN G +  +     HKR KHI+ KYH  RE  +   + 
Sbjct: 1311 LKFLLTSINI--KLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVIC 1370

Query: 134  VTQIASTHNVADPFTKPLTAKVFEGHLESLGL 165
            +  I + + +AD FTKPL A  F    + LGL
Sbjct: 1371 LEYIPTENQLADIFTKPLPAARFVELRDKLGL 1400

[Close]

BLAST of Cmc01g0020991 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 8.1e-11
Identity = 35/63 (55.56%), Postives = 44/63 (69.84%), Query Frame = 0


Query: 11  LTRYIDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEA 70
           L  Y D+D+  D +SR+STSG +F LNGG V WRS KQ  +A S+ E EY+A  EA +EA
Sbjct: 71  LVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEYMALSEATQEA 130

Query: 71  VWL 74
           VWL
Sbjct: 131 VWL 133

[Close]

BLAST of Cmc01g0020991 vs. ExPASy TrEMBL
Match: A0A5D3BE74 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold986G00490 PE=4 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 2.7e-86
Identity = 163/171 (95.32%), Postives = 164/171 (95.91%), Query Frame = 0


Query: 1   MLVYGSKDLILTRYIDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEY 60
           MLVYGSKDLILTRYIDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEY
Sbjct: 611 MLVYGSKDLILTRYIDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEY 670

Query: 61  VAACEAAKEAVWLRKFLIDLEVVPNMSKPITLYCDNSGTVVNSRERRSHKRGKHIERKYH 120
           +AACEAAKEAVWLRKFLIDLEVVPNM KPITLYCDNSG VVNSRE RSHKRGKHIERKYH
Sbjct: 671 LAACEAAKEAVWLRKFLIDLEVVPNMLKPITLYCDNSGAVVNSREPRSHKRGKHIERKYH 730

Query: 121 LIREIERRGDVIVTQIASTHNVADPFTKPLTAKVFEGHLESLGLRDMPHLI 172
           LIREIE RGDVIVTQIA THNV DPFTKPLTAKVFEGHL SLGLRDMPHLI
Sbjct: 731 LIREIEHRGDVIVTQIALTHNVGDPFTKPLTAKVFEGHLGSLGLRDMPHLI 781

[Close]

BLAST of Cmc01g0020991 vs. ExPASy TrEMBL
Match: A0A5A7VB15 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold357G00160 PE=4 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 2.7e-86
Identity = 163/171 (95.32%), Postives = 164/171 (95.91%), Query Frame = 0


Query: 1   MLVYGSKDLILTRYIDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEY 60
           MLVYGSKDLILTRYIDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEY
Sbjct: 390 MLVYGSKDLILTRYIDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEY 449

Query: 61  VAACEAAKEAVWLRKFLIDLEVVPNMSKPITLYCDNSGTVVNSRERRSHKRGKHIERKYH 120
           +AACEAAKEAVWLRKFLIDLEVVPNM KPITLYCDNSG VVNSRE RSHKRGKHIERKYH
Sbjct: 450 LAACEAAKEAVWLRKFLIDLEVVPNMLKPITLYCDNSGAVVNSREPRSHKRGKHIERKYH 509

Query: 121 LIREIERRGDVIVTQIASTHNVADPFTKPLTAKVFEGHLESLGLRDMPHLI 172
           LIREIE RGDVIVTQIA THNV DPFTKPLTAKVFEGHL SLGLRDMPHLI
Sbjct: 510 LIREIEHRGDVIVTQIALTHNVGDPFTKPLTAKVFEGHLGSLGLRDMPHLI 560

[Close]

BLAST of Cmc01g0020991 vs. ExPASy TrEMBL
Match: A0A5A7TWI0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G001610 PE=4 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 3.9e-85
Identity = 161/170 (94.71%), Postives = 161/170 (94.71%), Query Frame = 0


Query: 1   MLVYGSKDLILTRYIDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEY 60
           MLVYGSKDLILT Y DSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCI DSTMEAEY
Sbjct: 339 MLVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIVDSTMEAEY 398

Query: 61  VAACEAAKEAVWLRKFLIDLEVVPNMSKPITLYCDNSGTVVNSRERRSHKRGKHIERKYH 120
           VAACEAAKEAVWLR FLIDLEVVPNMSKPITLYCDNSG V NSRE RSHKRGKHIERKYH
Sbjct: 399 VAACEAAKEAVWLRNFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHKRGKHIERKYH 458

Query: 121 LIREIERRGDVIVTQIASTHNVADPFTKPLTAKVFEGHLESLGLRDMPHL 171
           LIREI  RGDVIVTQIASTHNVADPFTKPLTAKVFEGHLESLGLRDMPHL
Sbjct: 459 LIREIVHRGDVIVTQIASTHNVADPFTKPLTAKVFEGHLESLGLRDMPHL 508

[Close]

BLAST of Cmc01g0020991 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 5.1e-85
Identity = 161/169 (95.27%), Postives = 161/169 (95.27%), Query Frame = 0


Query: 2    LVYGSKDLILTRYIDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 61
            LVYGSKDLILT Y DSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV
Sbjct: 1174 LVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 1233

Query: 62   AACEAAKEAVWLRKFLIDLEVVPNMSKPITLYCDNSGTVVNSRERRSHKRGKHIERKYHL 121
            AACEAAKEAVWLR FLIDLEVVPNMSKPITLYCDNSG V NSRE RSHKRGKHIERKYHL
Sbjct: 1234 AACEAAKEAVWLRNFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHKRGKHIERKYHL 1293

Query: 122  IREIERRGDVIVTQIASTHNVADPFTKPLTAKVFEGHLESLGLRDMPHL 171
            IREI  RGDVIVTQIASTHNVADPFTKPLTAKVFEGHLESLGLRDMPHL
Sbjct: 1294 IREIVHRGDVIVTQIASTHNVADPFTKPLTAKVFEGHLESLGLRDMPHL 1342

[Close]

BLAST of Cmc01g0020991 vs. ExPASy TrEMBL
Match: A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 5.1e-85
Identity = 161/169 (95.27%), Postives = 161/169 (95.27%), Query Frame = 0


Query: 2    LVYGSKDLILTRYIDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 61
            LVYGSKDLILT Y DSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV
Sbjct: 1174 LVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 1233

Query: 62   AACEAAKEAVWLRKFLIDLEVVPNMSKPITLYCDNSGTVVNSRERRSHKRGKHIERKYHL 121
            AACEAAKEAVWLR FLIDLEVVPNMSKPITLYCDNSG V NSRE RSHKRGKHIERKYHL
Sbjct: 1234 AACEAAKEAVWLRNFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHKRGKHIERKYHL 1293

Query: 122  IREIERRGDVIVTQIASTHNVADPFTKPLTAKVFEGHLESLGLRDMPHL 171
            IREI  RGDVIVTQIASTHNVADPFTKPLTAKVFEGHLESLGLRDMPHL
Sbjct: 1294 IREIVHRGDVIVTQIASTHNVADPFTKPLTAKVFEGHLESLGLRDMPHL 1342

[Close]

BLAST of Cmc01g0020991 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 79.7 bits (195), Expect = 2.5e-15
Identity = 45/124 (36.29%), Postives = 72/124 (58.06%), Query Frame = 0


Query: 2   LVYGSK-DLILTRYIDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEY 61
           L Y S+ ++ L  + D+ FQ+ +D+R+ST+G    L    + W+S KQ  ++ S+ EAEY
Sbjct: 432 LFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEY 491

Query: 62  VAACEAAKEAVWLRKFLIDLEVVPNMSKPITLYCDNSGTVVNSRERRSHKRGKHIERKYH 121
            A   A  E +WL +F  +L++   +SKP  L+CDN+  +  +     H+R KHIE   H
Sbjct: 492 RALSFATDEMMWLAQFFRELQL--PLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCH 551

Query: 122 LIRE 125
            +RE
Sbjct: 552 SVRE 553

The following BLAST results are available for this feature:

BLAST of Cmc01g0020991 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062799.1	5.6e-86	95.32	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYJ96755.1	5.6e-86	95.32	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0046416.1	8.1e-85	94.71	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYJ97618.1	1.1e-84	95.27	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0048404.1	1.1e-84	95.27	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc01g0020991 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	8.0e-27	40.49	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.1e-20	36.84	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P0CV72	8.1e-11	55.56	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]

BLAST of Cmc01g0020991 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BE74	2.7e-86	95.32	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold986G0049...	[more]
A0A5A7VB15	2.7e-86	95.32	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold357G0016...	[more]
A0A5A7TWI0	3.9e-85	94.71	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G0016...	[more]
A0A5A7SMH8	5.1e-85	95.27	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]
A0A5D3CPJ6	5.1e-85	95.27	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004...	[more]

BLAST of Cmc01g0020991 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	2.5e-15	36.29	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439:SF355	CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8	coord: 32..164
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 32..164
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 14..153 e-value: 4.1498E-64 score: 191.528

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0020991.1	Cmc01g0020991.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding