MELO3C032204 (gene) Melon (DHL92) v4

Overview


Name	MELO3C032204
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Transcription factor GTE8-like isoform X3
Location	chr12: 13967371 .. 13968323 (+)
RNA-Seq Expression	MELO3C032204
Synteny	MELO3C032204

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAATGAGTCTTGAACAGTATGTAGAGACATACAAGGATCAATATTCTGTTGTAGTTAAAATTATATTCTATTTTATAGAGTCACTACAAGAAATCGGGATTTTTCCGACGCCAAAAAACGTCGGGAAAAGTGAAAAATATGTCGGGAAAGGATCTCCCGACGCAGTCCTCGGCGTCGGGACAAACGTCGAGGGAAGTGAGTCGGGATAGGCTTTCCCGACGCTGTATTGGTCACGCGTCGGGAAAGCCTCTCCCGACACCGTCTTTCTCGACGCAATCTACGACGTCGAGAAAGCCTCGTCTGCTTTTTCGACGCCATGTATTGCGTCGGGAAAGCCTCCCCCAACAGGCTTTACCGTGCAGCTTTGTTAAGGAACCATTTTGCCGACACTATACTGAAAGCTCGAGAAAAGGCACTTGAAAAGGTTCGTTAAACTTGAGATTTTTCTTGTTTGTCCAATGTTAGACCAACCCTATGATGCACAGACGCACACATATTCATTCAATGAAAGTTGTTTCAATAAAAAAAAATTCATTTAAGATATATTTGTTTTGAAAGTCATTGACTGACTTAACTACTGGTTGACAAACGGGATCTTGAAAAGTGAGAATGGAGAGAGAAGAACTTGAAAGACAGCAAAGAGAAGGTTGACGGTGAGCTACGGATGGAGGAAGGCTGAAGCTGAAGTTGCGGCCGCGGCGAGGGACGACAACGACGATGGAACGGATGGCGGCGAGCTATAGACGGCGACAAATGTTTCTCTCTTCTCCGAACCCTTTCCCTTTCGTTTTCAGTTCTGTGTAAAATAGAAACGAAATAAATATTCAGAGGATCTCCCGACGCACTAATTATGGCGTCGGGAAAACCTAGACCTTTTCCGACGCACTACGTACGGCGTCGGGAAAACCTAAACCTTTCCCGACACACTACTTACAGCGTCGGAAAAACCTAG

mRNA sequence

TTAATGAGTCTTGAACAGTATGTAGAGACATACAAGGATCAATATTCTGTTGTAGTTAAAATTATATTCTATTTTATAGAGTCACTACAAGAAATCGGGATTTTTCCGACGCCAAAAAACGTCGGGAAAAGTGAAAAATATGTCGGGAAAGGATCTCCCGACGCAGTCCTCGGCGTCGGGACAAACGTCGAGGGAAGTGAGTCGGGATAGGCTTTCCCGACGCTGTATTGGTCACGCGTCGGGAAAGCCTCTCCCGACACCGTCTTTCTCGACGCAATCTACGACGTCGAGAAAGCCTCGTCTGCTTTTTCGACGCCATGTATTGCGTCGGGAAAGCCTCCCCCAACAGGCTTTACCGTGCAGCTTTGTTAAGGAACCATTTTGCCGACACTATACTGAAAGCTCGAGAAAAGGCACTTGAAAAGGTTGACAAACGGGATCTTGAAAAGTGAGAATGGAGAGAGAAGAACTTGAAAGACAGCAAAGAGAAGGTTGACGGTGAGCTACGGATGGAGGAAGGCTGAAGCTGAAGTTGCGGCCGCGGCGAGGGACGACAACGACGATGGAACGGATGGCGGCGAGCTATAGACGGCGACAAATGTTTCTCTCTTCTCCGAACCCTTTCCCTTTCAAACGAAATAAATATTCAGAGGATCTCCCGACGCACTAATTATGGCGTCGGGAAAACCTAGACCTTTTCCGACGCACTACGTACGGCGTCGGGAAAACCTAAACCTTTCCCGACACACTACTTACAGCGTCGGAAAAACCTAG

Coding sequence (CDS)

ATGTCGGGAAAGGATCTCCCGACGCAGTCCTCGGCGTCGGGACAAACGTCGAGGGAAGTGAGTCGGGATAGGCTTTCCCGACGCTGTATTGGTCACGCGTCGGGAAAGCCTCTCCCGACACCGTCTTTCTCGACGCAATCTACGACGTCGAGAAAGCCTCGTCTGCTTTTTCGACGCCATGTATTGCGTCGGGAAAGCCTCCCCCAACAGGCTTTACCGTGCAGCTTTGTTAAGGAACCATTTTGCCGACACTATACTGAAAGCTCGAGAAAAGGCACTTGA

Protein sequence

MSGKDLPTQSSASGQTSREVSRDRLSRRCIGHASGKPLPTPSFSTQSTTSRKPRLLFRRHVLRRESLPQQALPCSFVKEPFCRHYTESSRKGT

Homology

[Close]

BLAST of MELO3C032204 vs. NCBI nr
Match: KAA0052254.1 (Nuclear protein X1 isoform 3 [Cucumis melo var. makuwa] >TYK01819.1 Nuclear protein X1 isoform 3 [Cucumis melo var. makuwa])

HSP 1 Score: 152.5 bits (384), Expect = 1.8e-33
Identity = 77/90 (85.56%), Postives = 81/90 (90.00%), Query Frame = 0


Query: 2   SGKDLPTQSSASGQTSREVSRDRLSRRCIGHASGKPLPTPSFSTQSTTSRKPRLLFRRHV 61
           SGKDLPTQSSAS QTS EVSRDRLSR C+G ASGKPLPTPSF  QSTTS KPRLL RRHV
Sbjct: 40  SGKDLPTQSSASRQTSGEVSRDRLSRSCVGQASGKPLPTPSFPMQSTTSGKPRLLSRRHV 99

Query: 62  LRRESLPQQALPCSFVKEPFCRHYTESSRK 92
           LRR+SLP+QALPCSFV+EPFCRHY ESSRK
Sbjct: 100 LRRKSLPRQALPCSFVEEPFCRHYIESSRK 129

[Close]

BLAST of MELO3C032204 vs. NCBI nr
Match: TYK29695.1 (hypothetical protein E5676_scaffold3607G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 151.8 bits (382), Expect = 3.0e-33
Identity = 80/92 (86.96%), Postives = 83/92 (90.22%), Query Frame = 0


Query: 1  MSGKDLPTQSSASGQTSREVSRDRLSRRCIGHASG-KPLPTPSFSTQSTTSRKPRLLFRR 60
          MSGKDLPTQSS SGQTSREVSRDRLSRR +GHASG KPL T SF TQ+TTS KPRLL RR
Sbjct: 8  MSGKDLPTQSSTSGQTSREVSRDRLSRRRVGHASGKKPLLTSSFPTQTTTSGKPRLLSRR 67

Query: 61 HVLRRESLPQQALPCSFVKEPFCRHYTESSRK 92
          HVLRRESLP+QALPCSFVKEP CRHYTESSRK
Sbjct: 68 HVLRRESLPRQALPCSFVKEPVCRHYTESSRK 99

[Close]

BLAST of MELO3C032204 vs. NCBI nr
Match: TYK00324.1 (uncharacterized protein E5676_scaffold1923G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 143.7 bits (361), Expect = 8.2e-31
Identity = 76/91 (83.52%), Postives = 78/91 (85.71%), Query Frame = 0


Query: 1  MSGKDLPTQSSASGQTSREVSRDRLSRRCIGHASGKPLPTPSFSTQSTTSRKPRLLFRRH 60
          MSGKDL TQSS SGQTS EVS DRLSRR    ASGKPLPTPSF  Q+TTS KPRLL RRH
Sbjct: 1  MSGKDLSTQSSVSGQTSGEVSWDRLSRRVTNTASGKPLPTPSFPMQTTTSGKPRLLSRRH 60

Query: 61 VLRRESLPQQALPCSFVKEPFCRHYTESSRK 92
          VLRRESLP+QALPCSFVKEPF RHYTESSRK
Sbjct: 61 VLRRESLPRQALPCSFVKEPFYRHYTESSRK 91

[Close]

BLAST of MELO3C032204 vs. NCBI nr
Match: TYK01596.1 (transcription factor GTE8-like isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 116.3 bits (290), Expect = 1.4e-22
Identity = 60/81 (74.07%), Postives = 65/81 (80.25%), Query Frame = 0


Query: 1  MSGKDLPTQSSASGQTSREVSRDRLSRRCIGHASGKPLPTPSFSTQSTTSRKPRLLFRRH 60
          M GKDLPTQSS SGQTS EVSRDRLSRRCIGHASGKPLPT SF  Q+TTS KPRLLFRRH
Sbjct: 1  MLGKDLPTQSSTSGQTSGEVSRDRLSRRCIGHASGKPLPTSSFPMQTTTSGKPRLLFRRH 60

Query: 61 VLRRESLPQQALPCSFVKEPF 82
          VL RESLP +    + ++  F
Sbjct: 61 VLHRESLPDRLYRAALLRNQF 81

[Close]

BLAST of MELO3C032204 vs. NCBI nr
Match: TYK09453.1 (transcription factor GTE10-like isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 106.7 bits (265), Expect = 1.1e-19
Identity = 56/81 (69.14%), Postives = 62/81 (76.54%), Query Frame = 0


Query: 1  MSGKDLPTQSSASGQTSREVSRDRLSRRCIGHASGKPLPTPSFSTQSTTSRKPRLLFRRH 60
          MSGKDLP QSSASGQTS EVS+DRLSRRC+GHASGKPLPT SF TQST S KP LL R  
Sbjct: 1  MSGKDLPMQSSASGQTSGEVSQDRLSRRCVGHASGKPLPTSSFPTQSTASGKPHLLSRHR 60

Query: 61 VLRRESLPQQALPCSFVKEPF 82
          VLRRES P +    + ++  F
Sbjct: 61 VLRRESSPDRLYRAALLRNRF 81

[Close]

BLAST of MELO3C032204 vs. ExPASy TrEMBL
Match: A0A5A7UA68 (Nuclear protein X1 isoform 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00600 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 8.5e-34
Identity = 77/90 (85.56%), Postives = 81/90 (90.00%), Query Frame = 0


Query: 2   SGKDLPTQSSASGQTSREVSRDRLSRRCIGHASGKPLPTPSFSTQSTTSRKPRLLFRRHV 61
           SGKDLPTQSSAS QTS EVSRDRLSR C+G ASGKPLPTPSF  QSTTS KPRLL RRHV
Sbjct: 40  SGKDLPTQSSASRQTSGEVSRDRLSRSCVGQASGKPLPTPSFPMQSTTSGKPRLLSRRHV 99

Query: 62  LRRESLPQQALPCSFVKEPFCRHYTESSRK 92
           LRR+SLP+QALPCSFV+EPFCRHY ESSRK
Sbjct: 100 LRRKSLPRQALPCSFVEEPFCRHYIESSRK 129

[Close]

BLAST of MELO3C032204 vs. ExPASy TrEMBL
Match: A0A5D3E311 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3607G00010 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.5e-33
Identity = 80/92 (86.96%), Postives = 83/92 (90.22%), Query Frame = 0


Query: 1  MSGKDLPTQSSASGQTSREVSRDRLSRRCIGHASG-KPLPTPSFSTQSTTSRKPRLLFRR 60
          MSGKDLPTQSS SGQTSREVSRDRLSRR +GHASG KPL T SF TQ+TTS KPRLL RR
Sbjct: 8  MSGKDLPTQSSTSGQTSREVSRDRLSRRRVGHASGKKPLLTSSFPTQTTTSGKPRLLSRR 67

Query: 61 HVLRRESLPQQALPCSFVKEPFCRHYTESSRK 92
          HVLRRESLP+QALPCSFVKEP CRHYTESSRK
Sbjct: 68 HVLRRESLPRQALPCSFVKEPVCRHYTESSRK 99

[Close]

BLAST of MELO3C032204 vs. ExPASy TrEMBL
Match: A0A5D3BM25 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1923G00020 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 4.0e-31
Identity = 76/91 (83.52%), Postives = 78/91 (85.71%), Query Frame = 0


Query: 1  MSGKDLPTQSSASGQTSREVSRDRLSRRCIGHASGKPLPTPSFSTQSTTSRKPRLLFRRH 60
          MSGKDL TQSS SGQTS EVS DRLSRR    ASGKPLPTPSF  Q+TTS KPRLL RRH
Sbjct: 1  MSGKDLSTQSSVSGQTSGEVSWDRLSRRVTNTASGKPLPTPSFPMQTTTSGKPRLLSRRH 60

Query: 61 VLRRESLPQQALPCSFVKEPFCRHYTESSRK 92
          VLRRESLP+QALPCSFVKEPF RHYTESSRK
Sbjct: 61 VLRRESLPRQALPCSFVKEPFYRHYTESSRK 91

[Close]

BLAST of MELO3C032204 vs. ExPASy TrEMBL
Match: A0A5D3BTQ2 (Transcription factor GTE8-like isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G001860 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 6.8e-23
Identity = 60/81 (74.07%), Postives = 65/81 (80.25%), Query Frame = 0


Query: 1  MSGKDLPTQSSASGQTSREVSRDRLSRRCIGHASGKPLPTPSFSTQSTTSRKPRLLFRRH 60
          M GKDLPTQSS SGQTS EVSRDRLSRRCIGHASGKPLPT SF  Q+TTS KPRLLFRRH
Sbjct: 1  MLGKDLPTQSSTSGQTSGEVSRDRLSRRCIGHASGKPLPTSSFPMQTTTSGKPRLLFRRH 60

Query: 61 VLRRESLPQQALPCSFVKEPF 82
          VL RESLP +    + ++  F
Sbjct: 61 VLHRESLPDRLYRAALLRNQF 81

[Close]

BLAST of MELO3C032204 vs. ExPASy TrEMBL
Match: A0A5D3CC68 (Transcription factor GTE10-like isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold499G00420 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 5.4e-20
Identity = 56/81 (69.14%), Postives = 62/81 (76.54%), Query Frame = 0


Query: 1  MSGKDLPTQSSASGQTSREVSRDRLSRRCIGHASGKPLPTPSFSTQSTTSRKPRLLFRRH 60
          MSGKDLP QSSASGQTS EVS+DRLSRRC+GHASGKPLPT SF TQST S KP LL R  
Sbjct: 1  MSGKDLPMQSSASGQTSGEVSQDRLSRRCVGHASGKPLPTSSFPTQSTASGKPHLLSRHR 60

Query: 61 VLRRESLPQQALPCSFVKEPF 82
          VLRRES P +    + ++  F
Sbjct: 61 VLRRESSPDRLYRAALLRNRF 81

The following BLAST results are available for this feature:

BLAST of MELO3C032204 vs.


Match Name	E-value	Identity	Description

BLAST of MELO3C032204 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0052254.1	1.8e-33	85.56	Nuclear protein X1 isoform 3 [Cucumis melo var. makuwa] >TYK01819.1 Nuclear prot...	[more]
TYK29695.1	3.0e-33	86.96	hypothetical protein E5676_scaffold3607G00010 [Cucumis melo var. makuwa]	[more]
TYK00324.1	8.2e-31	83.52	uncharacterized protein E5676_scaffold1923G00020 [Cucumis melo var. makuwa]	[more]
TYK01596.1	1.4e-22	74.07	transcription factor GTE8-like isoform X3 [Cucumis melo var. makuwa]	[more]
TYK09453.1	1.1e-19	69.14	transcription factor GTE10-like isoform X3 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C032204 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UA68	8.5e-34	85.56	Nuclear protein X1 isoform 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5D3E311	1.5e-33	86.96	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BM25	4.0e-31	83.52	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BTQ2	6.8e-23	74.07	Transcription factor GTE8-like isoform X3 OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A5D3CC68	5.4e-20	69.14	Transcription factor GTE10-like isoform X3 OS=Cucumis melo var. makuwa OX=119469...	[more]

BLAST of MELO3C032204 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..19

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C032204.1	MELO3C032204.1	mRNA