MELO3C035602 (gene) Melon (DHL92) v4

Overview


Name	MELO3C035602
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Protein GL2-INTERACTING REPRESSOR 1
Location	chr12: 12756794 .. 12757057 (-)
RNA-Seq Expression	MELO3C035602
Synteny	MELO3C035602

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCAAAGCTTCAACAATTCAAAGTCGGAATCGATATCACAAGATCTATCATTAGCAATATCTAATTCAACAATTGAAGATCCCTCAACAGTGACTATGGTGCTATTAGGATGCACTCGATGCCTCATGTACATCATGTCTTCTAAATTAGATCTTAAATGTCCTAAGTGTAACAACACTACGCTACTTGATATATTTAATTTGACCAATCAAGTATCTCGAGGAAATTTTGTCGATATGTCACCTGATGTTACTAAATGA

mRNA sequence

ATGGGTCAAAGCTTCAACAATTCAAAGTCGGAATCGATATCACAAGATCTATCATTAGCAATATCTAATTCAACAATTGAAGATCCCTCAACAGTGACTATGGTGCTATTAGGATGCACTCGATGCCTCATGTACATCATGTCTTCTAAATTAGATCTTAAATGTCCTAAGTGTAACAACACTACGCTACTTGATATATTTAATTTGACCAATCAAGTATCTCGAGGAAATTTTGTCGATATGTCACCTGATGTTACTAAATGA

Coding sequence (CDS)

ATGGGTCAAAGCTTCAACAATTCAAAGTCGGAATCGATATCACAAGATCTATCATTAGCAATATCTAATTCAACAATTGAAGATCCCTCAACAGTGACTATGGTGCTATTAGGATGCACTCGATGCCTCATGTACATCATGTCTTCTAAATTAGATCTTAAATGTCCTAAGTGTAACAACACTACGCTACTTGATATATTTAATTTGACCAATCAAGTATCTCGAGGAAATTTTGTCGATATGTCACCTGATGTTACTAAATGA

Protein sequence

MGQSFNNSKSESISQDLSLAISNSTIEDPSTVTMVLLGCTRCLMYIMSSKLDLKCPKCNNTTLLDIFNLTNQVSRGNFVDMSPDVTK

Homology

[Close]

BLAST of MELO3C035602 vs. ExPASy Swiss-Prot
Match: Q9FNI1 (Protein GL2-INTERACTING REPRESSOR 1 OS=Arabidopsis thaliana OX=3702 GN=GIR1 PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.6e-07
Identity = 27/45 (60.00%), Postives = 32/45 (71.11%), Query Frame = 0


Query: 29  PSTVTMVLLGCTRCLMYIMSSKLDLKCPKCNNTTLLDIF--NLTN 72
           P T +MVL+GC RCLMY+M S+ D KCPKC +T LLD    N TN
Sbjct: 61  PETTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHENATN 105

[Close]

BLAST of MELO3C035602 vs. ExPASy Swiss-Prot
Match: Q9SRN4 (Protein GL2-INTERACTING REPRESSOR 2 OS=Arabidopsis thaliana OX=3702 GN=GIR2 PE=1 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 2.0e-05
Identity = 32/64 (50.00%), Postives = 41/64 (64.06%), Query Frame = 0


Query: 3  QSFNNSKSESISQDLSLAISNSTIEDPSTVT-MVLLGCTRCLMYIMSSKLDLKCPKCNNT 62
          +S N S + S S  +S   S +  E+  T+T MVL+GC RCLMY+M S  D KCPKC +T
Sbjct: 31 RSPNRSNTTSPSSCVS---SETNQEENETITSMVLVGCPRCLMYVMLSDDDPKCPKCKST 90

Query: 63 TLLD 66
           LLD
Sbjct: 91 VLLD 91

[Close]

BLAST of MELO3C035602 vs. NCBI nr
Match: KAG6583700.1 (hypothetical protein SDJN03_19632, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019351.1 hypothetical protein SDJN02_18311 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 98.2 bits (243), Expect = 3.7e-17
Identity = 47/66 (71.21%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 22 SNSTIEDPSTVTMVLLGCTRCLMYIMSSKLDLKCPKCNNTTLLDIFNLTNQVSRGNFVDM 81
          S+S  ED +T  MVLLGCT+CLMY+MSSK DLKCPKCNNTTLLD+ NL NQ S+ N VDM
Sbjct: 18 SSSKTEDATTSVMVLLGCTQCLMYVMSSKFDLKCPKCNNTTLLDVHNLANQASKKNLVDM 77

Query: 82 SPDVTK 88
          S DV K
Sbjct: 78 SIDVAK 83

[Close]

BLAST of MELO3C035602 vs. NCBI nr
Match: XP_010683626.1 (PREDICTED: histone-lysine N-methyltransferase, H3 lysine-79 specific [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 62.4 bits (150), Expect = 2.2e-06
Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = 0


Query: 1   MGQSFNNSKSESISQDLSLAISNSTIEDPSTVTMVLLGCTRCLMYIMSSKLDLKCPKCNN 60
           M ++ + S+S S+S   S   S  ++  P T +MVL+GC RCLMY+M S+ D KCPKC +
Sbjct: 111 MRRAESPSRSASVSPPSSCVSSEISMNSPETTSMVLVGCPRCLMYVMLSEEDPKCPKCKS 170

Query: 61  TTLLDIFNLTNQVSRGN 78
           T LLD  +  N  +  N
Sbjct: 171 TVLLDFMHDNNDNNNNN 187

[Close]

BLAST of MELO3C035602 vs. NCBI nr
Match: KMT06681.1 (hypothetical protein BVRB_7g158450 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 62.4 bits (150), Expect = 2.2e-06
Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = 0


Query: 1  MGQSFNNSKSESISQDLSLAISNSTIEDPSTVTMVLLGCTRCLMYIMSSKLDLKCPKCNN 60
          M ++ + S+S S+S   S   S  ++  P T +MVL+GC RCLMY+M S+ D KCPKC +
Sbjct: 17 MRRAESPSRSASVSPPSSCVSSEISMNSPETTSMVLVGCPRCLMYVMLSEEDPKCPKCKS 76

Query: 61 TTLLDIFNLTNQVSRGN 78
          T LLD  +  N  +  N
Sbjct: 77 TVLLDFMHDNNDNNNNN 93

[Close]

BLAST of MELO3C035602 vs. NCBI nr
Match: PNX88389.1 (hypothetical protein L195_g044492, partial [Trifolium pratense])

HSP 1 Score: 60.1 bits (144), Expect = 1.1e-05
Identity = 29/64 (45.31%), Postives = 41/64 (64.06%), Query Frame = 0


Query: 8   SKSESISQDLSLAISNSTIEDPSTVTMVLLGCTRCLMYIMSSKLDLKCPKCNNTTLLDIF 67
           ++S S+S   S   S +    P  ++M+L+GC RCLMY+M S+ D KCPKC++T LLD  
Sbjct: 47  TRSASVSPPSSCVSSENGSNSPEAISMLLVGCPRCLMYVMLSENDPKCPKCHSTVLLDFL 106

Query: 68  NLTN 72
           N  N
Sbjct: 107 NTEN 110

[Close]

BLAST of MELO3C035602 vs. NCBI nr
Match: XP_010104801.1 (uncharacterized protein LOC21401814 [Morus notabilis] >EXC01942.1 hypothetical protein L484_018856 [Morus notabilis])

HSP 1 Score: 59.3 bits (142), Expect = 1.9e-05
Identity = 32/66 (48.48%), Postives = 42/66 (63.64%), Query Frame = 0


Query: 10  SESISQDLSLAISNSTIEDPSTVTMVLLGCTRCLMYIMSSKLDLKCPKCNNTTLLDIFNL 69
           S  ++QD SL  SNS    P   +MVL+GC RCLMY+M S+ D KCPKC +T LLD  + 
Sbjct: 47  SSELNQDDSLRYSNS----PEATSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHD 106

Query: 70  TNQVSR 76
            N  ++
Sbjct: 107 NNATTQ 108

[Close]

BLAST of MELO3C035602 vs. ExPASy TrEMBL
Match: A0A7N2R1P8 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 4.1e-06
Identity = 35/78 (44.87%), Postives = 49/78 (62.82%), Query Frame = 0


Query: 10  SESISQDLSL---AISNSTIE------DPSTVTMVLLGCTRCLMYIMSSKLDLKCPKCNN 69
           S S S D+S+    +S+  +E       P + +MVL+GC RCLMY+M S++D KCPKC +
Sbjct: 31  STSFSSDMSIESSCVSSEPVETLQCPSSPDSTSMVLVGCPRCLMYVMLSEVDPKCPKCKS 90

Query: 70  TTLLDIFNLTN-QVSRGN 78
           T LLD F   N + +RGN
Sbjct: 91  TALLDFFKEENSKNNRGN 108

[Close]

BLAST of MELO3C035602 vs. ExPASy TrEMBL
Match: A0A2K3MC92 (Uncharacterized protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g044492 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.4e-06
Identity = 29/64 (45.31%), Postives = 41/64 (64.06%), Query Frame = 0


Query: 8   SKSESISQDLSLAISNSTIEDPSTVTMVLLGCTRCLMYIMSSKLDLKCPKCNNTTLLDIF 67
           ++S S+S   S   S +    P  ++M+L+GC RCLMY+M S+ D KCPKC++T LLD  
Sbjct: 47  TRSASVSPPSSCVSSENGSNSPEAISMLLVGCPRCLMYVMLSENDPKCPKCHSTVLLDFL 106

Query: 68  NLTN 72
           N  N
Sbjct: 107 NTEN 110

[Close]

BLAST of MELO3C035602 vs. ExPASy TrEMBL
Match: A0A1S2XTG6 (uncharacterized protein LOC101497048 OS=Cicer arietinum OX=3827 GN=LOC101497048 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 9.2e-06
Identity = 30/64 (46.88%), Postives = 40/64 (62.50%), Query Frame = 0


Query: 8  SKSESISQDLSLAISNSTIEDPSTVTMVLLGCTRCLMYIMSSKLDLKCPKCNNTTLLDIF 67
          ++S S+S   S   S +    P   +MVL+GC RCLMY+M S+ D KCPKC++T LLD  
Sbjct: 31 TRSASVSPPSSCVSSENDPNSPEPTSMVLVGCPRCLMYVMLSENDPKCPKCHSTVLLDFL 90

Query: 68 NLTN 72
           L N
Sbjct: 91 KLDN 94

[Close]

BLAST of MELO3C035602 vs. ExPASy TrEMBL
Match: A0A2Z6M630 (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_340120 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 9.2e-06
Identity = 29/64 (45.31%), Postives = 40/64 (62.50%), Query Frame = 0


Query: 8  SKSESISQDLSLAISNSTIEDPSTVTMVLLGCTRCLMYIMSSKLDLKCPKCNNTTLLDIF 67
          ++S S+S   S   S +    P   +M+L+GC RCLMY+M S+ D KCPKC++T LLD  
Sbjct: 31 TRSASVSSPSSCVSSENGSNSPEATSMLLVGCPRCLMYVMLSENDPKCPKCHSTVLLDFL 90

Query: 68 NLTN 72
          N  N
Sbjct: 91 NTEN 94

[Close]

BLAST of MELO3C035602 vs. ExPASy TrEMBL
Match: A0A5D2KTB2 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D05G087100v1 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 9.2e-06
Identity = 26/49 (53.06%), Postives = 35/49 (71.43%), Query Frame = 0


Query: 29  PSTVTMVLLGCTRCLMYIMSSKLDLKCPKCNNTTLLDIFNLTNQVSRGN 78
           P  ++MVL+GC RCLMY+M S++D KCPKC +T LLD+F+  N     N
Sbjct: 61  PEGMSMVLVGCPRCLMYVMLSEVDPKCPKCKSTVLLDLFSQLNAKKASN 109

[Close]

BLAST of MELO3C035602 vs. TAIR 10
Match: AT5G06270.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 55.5 bits (132), Expect = 2.6e-08
Identity = 27/45 (60.00%), Postives = 32/45 (71.11%), Query Frame = 0


Query: 29  PSTVTMVLLGCTRCLMYIMSSKLDLKCPKCNNTTLLDIF--NLTN 72
           P T +MVL+GC RCLMY+M S+ D KCPKC +T LLD    N TN
Sbjct: 61  PETTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHENATN 105

[Close]

BLAST of MELO3C035602 vs. TAIR 10
Match: AT3G11600.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06270.1); Has 171 Blast hits to 171 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 49.7 bits (117), Expect = 1.4e-06
Identity = 32/64 (50.00%), Postives = 41/64 (64.06%), Query Frame = 0


Query: 3  QSFNNSKSESISQDLSLAISNSTIEDPSTVT-MVLLGCTRCLMYIMSSKLDLKCPKCNNT 62
          +S N S + S S  +S   S +  E+  T+T MVL+GC RCLMY+M S  D KCPKC +T
Sbjct: 31 RSPNRSNTTSPSSCVS---SETNQEENETITSMVLVGCPRCLMYVMLSDDDPKCPKCKST 90

Query: 63 TLLD 66
           LLD
Sbjct: 91 VLLD 91

The following BLAST results are available for this feature:

BLAST of MELO3C035602 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FNI1	3.6e-07	60.00	Protein GL2-INTERACTING REPRESSOR 1 OS=Arabidopsis thaliana OX=3702 GN=GIR1 PE=1...	[more]
Q9SRN4	2.0e-05	50.00	Protein GL2-INTERACTING REPRESSOR 2 OS=Arabidopsis thaliana OX=3702 GN=GIR2 PE=1...	[more]

BLAST of MELO3C035602 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6583700.1	3.7e-17	71.21	hypothetical protein SDJN03_19632, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_010683626.1	2.2e-06	42.86	PREDICTED: histone-lysine N-methyltransferase, H3 lysine-79 specific [Beta vulga...	[more]
KMT06681.1	2.2e-06	42.86	hypothetical protein BVRB_7g158450 [Beta vulgaris subsp. vulgaris]	[more]
PNX88389.1	1.1e-05	45.31	hypothetical protein L195_g044492, partial [Trifolium pratense]	[more]
XP_010104801.1	1.9e-05	48.48	uncharacterized protein LOC21401814 [Morus notabilis] >EXC01942.1 hypothetical p...	[more]

BLAST of MELO3C035602 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7N2R1P8	4.1e-06	44.87	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A2K3MC92	5.4e-06	45.31	Uncharacterized protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g04449...	[more]
A0A1S2XTG6	9.2e-06	46.88	uncharacterized protein LOC101497048 OS=Cicer arietinum OX=3827 GN=LOC101497048 ...	[more]
A0A2Z6M630	9.2e-06	45.31	Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_340120 PE=4 SV...	[more]
A0A5D2KTB2	9.2e-06	53.06	Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D05G087100v1 P...	[more]

BLAST of MELO3C035602 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G06270.1	2.6e-08	60.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G11600.1	1.4e-06	50.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33177:SF51	GB\|AAF02129.1	coord: 12..71
None	No IPR available	PANTHER	PTHR33177	PUTATIVE-RELATED	coord: 12..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C035602.1	MELO3C035602.1	mRNA