MELO3C004940 (gene) Melon (DHL92) v4

Overview
NameMELO3C004940
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionUnknown protein
Locationchr12: 6002851 .. 6003271 (+)
RNA-Seq ExpressionMELO3C004940
SyntenyMELO3C004940
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCACGGCTCAACCAAAGAAAAACAGCTAAAAAACGGCTGGCAGCTTGGGTTGGAGGTAGAAAGCACGTGGTTGAAAGGCGGCTTGCTGCTGCTAGCTCATGCGGCGATCGGCTCTGCAAGACACAACTCAGCTGGACGGAAGTTTGCACGCAACTGGAGAAAAGAAGACAGCTCGCATACGCAGACGTGTGGCTTACCGAATGGCTGACAAACTCTTGGTCAGGCTGGGGAAGAACGACATAAACGACGACGAAGAAATGAAGAGAGCACCGATGCACAATTTCGTTGGGCTTTGTCAGATGAGAAACGCGGTGGCTTGAGTTGTTCATGCGATGGGATCGTGCAACTATCGACGACTTCGTTAGAGAGGGGAGTGGCGGAGAGAGCTGGCGGCGATAGTGGACTCATAGAGTAA

mRNA sequence

ATGGCTTCACGGCTCAACCAAAGAAAAACAGCTAAAAAACGGCTGGCAGCTTGGGTTGGAGGTAGAAAGCACGTGGTTGAAAGGCGGCTTGCTGCTGCTAGCTCATGCGGCGATCGGCTCTGCAAGACACAACTCAGCTGGACGGAAGCTGGGGAAGAACGACATAAACGACGACGAAGAAATGAAGAGAGCACCGATGCACAATTTCGTTGGGCTTTGTCAGATGAGAAACGCGGTGGCTTGAGTTGTTCATGCGATGGGATCGTGCAACTATCGACGACTTCGTTAGAGAGGGGAGTGGCGGAGAGAGCTGGCGGCGATAGTGGACTCATAGAGTAA

Coding sequence (CDS)

ATGGCTTCACGGCTCAACCAAAGAAAAACAGCTAAAAAACGGCTGGCAGCTTGGGTTGGAGGTAGAAAGCACGTGGTTGAAAGGCGGCTTGCTGCTGCTAGCTCATGCGGCGATCGGCTCTGCAAGACACAACTCAGCTGGACGGAAGCTGGGGAAGAACGACATAAACGACGACGAAGAAATGAAGAGAGCACCGATGCACAATTTCGTTGGGCTTTGTCAGATGAGAAACGCGGTGGCTTGAGTTGTTCATGCGATGGGATCGTGCAACTATCGACGACTTCGTTAGAGAGGGGAGTGGCGGAGAGAGCTGGCGGCGATAGTGGACTCATAGAGTAA

Protein sequence

MASRLNQRKTAKKRLAAWVGGRKHVVERRLAAASSCGDRLCKTQLSWTEAGEERHKRRRRNEESTDAQFRWALSDEKRGGLSCSCDGIVQLSTTSLERGVAERAGGDSGLIE
Homology
[Close]
BLAST of MELO3C004940 vs. NCBI nr
Match: KAA0032764.1 (hypothetical protein E6C27_scaffold708G00080 [Cucumis melo var. makuwa] >TYK23932.1 hypothetical protein E5676_scaffold428G00080 [Cucumis melo var. makuwa])

HSP 1 Score: 63.2 bits (152), Expect = 1.7e-06
Identity = 56/148 (37.84%), Postives = 70/148 (47.30%), Query Frame = 0 

Query: 1   MASRLNQRKTA-----KKRLAAWVGGRKHVVERRLAAASSCGDRLCKTQLSWTEAGEERH 60
           MA RLNQRKT      +++   W+     VVE  LAA  S GDRLCK  L W EA ++  
Sbjct: 1   MAWRLNQRKTTYGLGLRQKHVGWL-----VVEGWLAAIGSFGDRLCKMWLGWMEARKQLE 60

Query: 61  KRRR-----------------------------RNEESTDA--QFRWALSDEKRGGLSCS 113
           KRRR                             R E  T +    RW  +   + G   S
Sbjct: 61  KRRRLAYVDTWLDWTADNRLVRLRKNGVDDGEQRREAPTRSFIGLRWMRNAVVQVG---S 120

[Close]
BLAST of MELO3C004940 vs. ExPASy TrEMBL
Match: A0A5A7SNJ4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold428G00080 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 8.2e-07
Identity = 56/148 (37.84%), Postives = 70/148 (47.30%), Query Frame = 0 

Query: 1   MASRLNQRKTA-----KKRLAAWVGGRKHVVERRLAAASSCGDRLCKTQLSWTEAGEERH 60
           MA RLNQRKT      +++   W+     VVE  LAA  S GDRLCK  L W EA ++  
Sbjct: 1   MAWRLNQRKTTYGLGLRQKHVGWL-----VVEGWLAAIGSFGDRLCKMWLGWMEARKQLE 60

Query: 61  KRRR-----------------------------RNEESTDA--QFRWALSDEKRGGLSCS 113
           KRRR                             R E  T +    RW  +   + G   S
Sbjct: 61  KRRRLAYVDTWLDWTADNRLVRLRKNGVDDGEQRREAPTRSFIGLRWMRNAVVQVG---S 120

The following BLAST results are available for this feature:
BLAST of MELO3C004940 vs.
Match NameE-valueIdentityDescription
BLAST of MELO3C004940 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0032764.11.7e-0637.84hypothetical protein E6C27_scaffold708G00080 [Cucumis melo var. makuwa] >TYK2393... [more]
BLAST of MELO3C004940 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SNJ48.2e-0737.84Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of MELO3C004940 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C004940.1MELO3C004940.1mRNA