MELO3C035050 (gene) Melon (DHL92) v4

Overview
NameMELO3C035050
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionTSA1-like protein
Locationchr11: 17518858 .. 17519401 (+)
RNA-Seq ExpressionMELO3C035050
SyntenyMELO3C035050
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGGTAGATTTGACAAAGCAAACTGCGATGGTGATTCCAAAAATGTCTATAAAAGACCATGGTCGGCTCTTACCTACTTCATCTTAAAACCACCAGTTATAAATTTGCTATCTATCTAGAAATTTGTAACCCATCGAAAAAGGTATACAATGATTTTAACCAACGCCACCATTTTGGGTTAACATGATTGTACACATTTTTTGGTGGTCAGTACAGAACCAGAGGAAGTTTTGGTTGCTAAAGATGATGTAGGAGATGAGAGCAAGAACAAAGAATATGAGTTGCTCGAAAATAAATACGAGTTTTTAAGGCTTGACAATCTTACTTGTGATTCTATGGTCGGTGAAGGCAAGATTGAGGTCAATCGAGCAGTGGAAGGAAATGGAGAGTGAAAATCAACAACTCATGGAATTGTACACATTTTGAATATTTCTATGTATTACACTTGTTAAAAACAATCGTTTATGACTACATATTGTAAAAAAATTGTTAAAATAAAGAATATACACATTCATTTAGAACGTTTGGATTTTATTATTA

mRNA sequence

ATGGATGGTAGATTTGACAAAGCAAACTGCGATGAACCAGAGGAAGTTTTGGTTGCTAAAGATGATGTAGGAGATGAGAGCAAGAACAAAGAATATGAGTTGCTCGAAAATAAATACGAGTTTTTAAGGCTTGACAATCTTACTTGTGATTCTATGGTCGGTGAAGGCAAGATTGAGGTCAATCGAGCAGTGGAAGGAAATGGAGAGTGAAAATCAACAACTCATGGAATTGTACACATTTTGAATATTTCTATGTATTACACTTGTTAAAAACAATCGTTTATGACTACATATTGTAAAAAAATTGTTAAAATAAAGAATATACACATTCATTTAGAACGTTTGGATTTTATTATTA

Coding sequence (CDS)

ATGGATGGTAGATTTGACAAAGCAAACTGCGATGAACCAGAGGAAGTTTTGGTTGCTAAAGATGATGTAGGAGATGAGAGCAAGAACAAAGAATATGAGTTGCTCGAAAATAAATACGAGTTTTTAAGGCTTGACAATCTTACTTGTGATTCTATGGTCGGTGAAGGCAAGATTGAGGTCAATCGAGCAGTGGAAGGAAATGGAGAGTGA

Protein sequence

MDGRFDKANCDEPEEVLVAKDDVGDESKNKEYELLENKYEFLRLDNLTCDSMVGEGKIEVNRAVEGNGE
Homology
BLAST of MELO3C035050 vs. NCBI nr
Match: KAA0047373.1 (TSA1-like protein [Cucumis melo var. makuwa] >TYK14049.1 TSA1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 5.2e-06
Identity = 30/37 (81.08%), Postives = 34/37 (91.89%), Query Frame = 0

Query: 26 ESKNKEYELLENKYEFLRLDNLTCDSMVGEGKIEVNR 63
          ESKNKEYELL++KYEFLRLD+LT DSMV E KIEV+R
Sbjct: 6  ESKNKEYELLQSKYEFLRLDSLTHDSMVDEDKIEVDR 42

BLAST of MELO3C035050 vs. NCBI nr
Match: XP_031739615.1 (TSA1-like protein [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 1.5e-05
Identity = 35/60 (58.33%), Postives = 43/60 (71.67%), Query Frame = 0

Query: 5  FDKANCDEPEEVLVAKD---DVGDESKNKEYELLENKYEFLRLDNLTCDSMVGEGKIEVN 62
          F   + D+ EE LVAK+       ESKNKEYELL++KYEFLRLDNLT  SMV + K+EV+
Sbjct: 39 FRAKDFDKVEEALVAKEVKMRKEIESKNKEYELLQSKYEFLRLDNLTHKSMVEQDKVEVD 98

BLAST of MELO3C035050 vs. NCBI nr
Match: KAE8649201.1 (hypothetical protein Csa_014777 [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 1.5e-05
Identity = 35/60 (58.33%), Postives = 43/60 (71.67%), Query Frame = 0

Query: 5  FDKANCDEPEEVLVAKD---DVGDESKNKEYELLENKYEFLRLDNLTCDSMVGEGKIEVN 62
          F   + D+ EE LVAK+       ESKNKEYELL++KYEFLRLDNLT  SMV + K+EV+
Sbjct: 39 FRAKDFDKVEEALVAKEVKMRKEIESKNKEYELLQSKYEFLRLDNLTHKSMVEQDKVEVD 98

BLAST of MELO3C035050 vs. NCBI nr
Match: KAA0048522.1 (TSA1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 58.9 bits (141), Expect = 2.0e-05
Identity = 28/36 (77.78%), Postives = 33/36 (91.67%), Query Frame = 0

Query: 26 ESKNKEYELLENKYEFLRLDNLTCDSMVGEGKIEVN 62
          ESKNKEYE+L++KYEFLRLDNLT DSMV + KIEV+
Sbjct: 6  ESKNKEYEILQSKYEFLRLDNLTHDSMVDQDKIEVD 41

BLAST of MELO3C035050 vs. NCBI nr
Match: TYK28313.1 (TSA1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 58.9 bits (141), Expect = 2.0e-05
Identity = 28/36 (77.78%), Postives = 33/36 (91.67%), Query Frame = 0

Query: 26 ESKNKEYELLENKYEFLRLDNLTCDSMVGEGKIEVN 62
          ESKNKEYE+L++KYEFLRLDNLT DSMV + KIEV+
Sbjct: 6  ESKNKEYEILQSKYEFLRLDNLTHDSMVDQDKIEVD 41

BLAST of MELO3C035050 vs. ExPASy TrEMBL
Match: A0A5A7TUZ5 (TSA1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00230 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.5e-06
Identity = 30/37 (81.08%), Postives = 34/37 (91.89%), Query Frame = 0

Query: 26 ESKNKEYELLENKYEFLRLDNLTCDSMVGEGKIEVNR 63
          ESKNKEYELL++KYEFLRLD+LT DSMV E KIEV+R
Sbjct: 6  ESKNKEYELLQSKYEFLRLDSLTHDSMVDEDKIEVDR 42

BLAST of MELO3C035050 vs. ExPASy TrEMBL
Match: A0A0A0KYB9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G051390 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 7.3e-06
Identity = 35/60 (58.33%), Postives = 43/60 (71.67%), Query Frame = 0

Query: 5  FDKANCDEPEEVLVAKD---DVGDESKNKEYELLENKYEFLRLDNLTCDSMVGEGKIEVN 62
          F   + D+ EE LVAK+       ESKNKEYELL++KYEFLRLDNLT  SMV + K+EV+
Sbjct: 33 FRAKDFDKVEEALVAKEVKMRKEIESKNKEYELLQSKYEFLRLDNLTHKSMVEQDKVEVD 92

BLAST of MELO3C035050 vs. ExPASy TrEMBL
Match: A0A5D3DX93 (TSA1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G001380 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 9.5e-06
Identity = 28/36 (77.78%), Postives = 33/36 (91.67%), Query Frame = 0

Query: 26 ESKNKEYELLENKYEFLRLDNLTCDSMVGEGKIEVN 62
          ESKNKEYE+L++KYEFLRLDNLT DSMV + KIEV+
Sbjct: 6  ESKNKEYEILQSKYEFLRLDNLTHDSMVDQDKIEVD 41

BLAST of MELO3C035050 vs. ExPASy TrEMBL
Match: A0A5A7TYB0 (TSA1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold61G001430 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 9.5e-06
Identity = 28/36 (77.78%), Postives = 33/36 (91.67%), Query Frame = 0

Query: 26 ESKNKEYELLENKYEFLRLDNLTCDSMVGEGKIEVN 62
          ESKNKEYE+L++KYEFLRLDNLT DSMV + KIEV+
Sbjct: 6  ESKNKEYEILQSKYEFLRLDNLTHDSMVDQDKIEVD 41

BLAST of MELO3C035050 vs. ExPASy TrEMBL
Match: A0A5A7TPQ9 (TSA1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G001710 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.6e-05
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = 0

Query: 5  FDKANCDEPEEVLVAKD---DVGDESKNKEYELLENKYEFLRLDNLTCDSMVGEGKIEVN 62
          F   + D+ EEVLVAK+       ES NKEYELL++KYEF+RL N+T DSMV + K+EV+
Sbjct: 39 FRAKDFDKVEEVLVAKEVKMRKEIESMNKEYELLQSKYEFMRLHNITHDSMVQQDKVEVD 98

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAA0047373.15.2e-0681.08TSA1-like protein [Cucumis melo var. makuwa] >TYK14049.1 TSA1-like protein [Cucu... [more]
XP_031739615.11.5e-0558.33TSA1-like protein [Cucumis sativus][more]
KAE8649201.11.5e-0558.33hypothetical protein Csa_014777 [Cucumis sativus][more]
KAA0048522.12.0e-0577.78TSA1-like protein [Cucumis melo var. makuwa][more]
TYK28313.12.0e-0577.78TSA1-like protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
A0A5A7TUZ52.5e-0681.08TSA1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00... [more]
A0A0A0KYB97.3e-0658.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G051390 PE=4 SV=1[more]
A0A5D3DX939.5e-0677.78TSA1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G00... [more]
A0A5A7TYB09.5e-0677.78TSA1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold61G001... [more]
A0A5A7TPQ93.6e-0555.00TSA1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G001... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035050.1MELO3C035050.1mRNA