MELO3C034512 (gene) Melon (DHL92) v4

Overview
NameMELO3C034512
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionReverse transcriptase
Locationchr10: 22133411 .. 22135695 (-)
RNA-Seq ExpressionMELO3C034512
SyntenyMELO3C034512
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TAAAAGGAAGGAAAAAGAAGAAGAAAATTTTCACTTTACTTTTCTTCTTCTCTTCCCTCCACTGCCAAGGTTTTCTCCATCCATTTCCACCACTTTCTTCACCATTTCTGCACTAACTTTCAGAGAAATTTCAAAGGGAAGAAGGCTGAGAAAGGAAGAAGAAGAAGTTCAAGAAGTTTTGTTGAAGAAAAACAAAGGAATTGCAAACAAATCTTCATCCTTGGTAGAAATTGGTTCACACAGCACACCTCTAATGTTATGTTGATTTCGAGCTACACAAAAATAATTAAGAGGTAAGGTTTACATTTACTGAAAGTTGATTCATTTTAAAACAAATTTAAGAAGAAAGTTTGAGCAAATTCGGATGTTCATTGGGTGATTTTTGATGAAGAAAACAATGCAGCTGGTTTTCACGCGATTTCAGGAGGTCTCTGGTTTTTCTTATTTTTTTTAGAGTACCGGTGGAGTTAGGATCTCTATTTGGTATGGTTGGAAAGATTATTAAATTTACTACAACTTTCACGAAGAAAGTGTGAACTAAAAATGACTAAAAATAAGTTAAATTGTAGGAACAAGCTAAAGGGGTCGTGTGCGCGCGATTATTGAAATTGTTCTGTTTTGAGGGTTATCTGAGTTTATTCACTGGGAATCAGATTTACATATCTTGAGATAAGTTTTAGAGAACCTCAAAATGAAGATTTTTATATAAAGAAATCTCATTTTGGTTAAGTATCAGAAGAGTTATGATCATTTGAATTTCGTGTTATGAATGTGGAAAATTCCGAGAAGTGTGTTGAGTATGGTTTATTGTTTTTAAGATGGACTTCTTTAGCATTATCCTTAGTGAGTCATGTTAAACATAAACTTTGAAGATCGTAATATTTAGGTTTCTAATACTCGGTTCTGGTTGTTTGACAGGCCAAGAGGAAATAGGTCGGATTTACACATCGCGAAACTAGTCCAAGACTGTGAGGGACCAAAACCAGTTTTTAAAAATATTTTCTTTCTTCTAAATATTTACTATGGTTGACTGATCTACACATTTATTTATAAAGCATTGAAAATCATTTGAAGTCTATGATTATTTTCAAGTATGAGTTTGGAGACAAGAATTCTTACTGAATGTTTATGCTAGCATGTGATTATTGAATATCTGGAAATTATTTGAACCACTGTGTTTCAAACAAAGTATGTGTTACCAAGTTTTGTTTTAAGAACTACAACATTTCACGAATAATCTAAGTAAGTTTAAGTTTTATGAAAGAAAAGGATAGCAGGCATGTTTTAATGTTTTCGTACGATTTTTCTAATGTTCCTATTAACTACATGACTAAGGTGTTGAGCCCGAGGCTATATGGTACCATGTGCACACAGGTTAGATTCCGTTGTTGACGTTGAGTGTACTCCGTAACAACGATGCTGTCGTGAGTGCTGGTTGGACCTCACTACGACAAAGACGATGAGAGTGCTGGGCAGGCCCCACTACATCGTAGAGCTTGTAAACGTTGTTGTACTGGGTGTACCCTACACAACGTAGATTTCTCATGTTAGTTAAATAAGGTTAAAATATTTTGATATACTTGATAGGCCTTGCTAGATTTCAATGACGTATATACTGAGTATTTAAGGAAGCTATTCTTACGATTATACGTCTATGTTTATGACTTGTATAAACATATTTATAAGTGTAAGCTTTCACGTGCTCTTACTTTTAAATTTCTAGTTTTAAACTGAGTCACTCACTGAGCTGTATAGCATACTCTTCCAAAATGTTTTACACACTTTCCAGGTAGAGATCGAGTTCCCGTGCTTGATAGACTGCCTTAGTCTGCTAAAATTTTGATATCGATTGCCAGTATGTGTTTAGAGTTGTGTATAGAGTCTGTTGTATTATAATGTATATATCTTTGTATGATATAGATACTCCACAGTTTGTGTAAGCTTTAGGAGCTGCAGTTGTATAAACCTTTGTTGGTTATACTTTGGTTAAGGTGTCTCTAGGTTTACTTGTGGAATTAGTTATTTCCGACATACATTTCATGCATGTATATGATTAGTCTAGGATTCGCTACATTGTGTGCATGTATAATAGTTTATATACGAGGTTGGCTAGTTCATCATATTAAAGTTTTAAGCAGAGTCGACAAATACAGGTAAAGAAAAGCGTTGTTCGTCGACTTCACACCATTTTTCGGTCTAAGCTAGCAGGTAGTCCGGGAAGGGGTGTGACATTTGTAAATATAAACAATCAACATACACGATTCCGTACATTATATAAACGATAA

mRNA sequence

TAAAAGGAAGGAAAAAGAAGAAGAAAATTTTCACTTTACTTTTCTTCTTCTCTTCCCTCCACTGCCAAGGTTTTCTCCATCCATTTCCACCACTTTCTTCACCATTTCTGCACTAACTTTCAGAGAAATTTCAAAGGGAAGAAGGCTGAGAAAGGAAGAAGAAGAAGTTCAAGAAGTTTTGTTGAAGAAAAACAAAGGAATTGCAAACAAATCTTCATCCTTGGTAGAAATTGGTTCACACAGCACACCTCTAATGTTATGTTGATTTCGAGCTACACAAAAATAATTAAGAGAGTACCGGTGGAGTTAGGATCTCTATTTGGTATGGTTTCTAATACTCGGTTCTGGTTGTTTGACAGGCCAAGAGGAAATAGGTCGGATTTACACATCGCGAAACTAGTCCAAGACTGTGAGGGACCAAAACCAGATAGCAGGCATGTTTTAATGTTTTCGTACGATTTTTCTAATGTTCCTATTAACTACATGACTAAGGTGTTGAGCCCGAGGCTATATGGTACCATGTGCACACAGAGTCGACAAATACAGGTAAAGAAAAGCGTTGTTCGTCGACTTCACACCATTTTTCGGTCTAAGCTAGCAGGTAGTCCGGGAAGGGGTGTGACATTTGTAAATATAAACAATCAACATACACGATTCCGTACATTATATAAACGATAA

Coding sequence (CDS)

ATGTTGATTTCGAGCTACACAAAAATAATTAAGAGAGTACCGGTGGAGTTAGGATCTCTATTTGGTATGGTTTCTAATACTCGGTTCTGGTTGTTTGACAGGCCAAGAGGAAATAGGTCGGATTTACACATCGCGAAACTAGTCCAAGACTGTGAGGGACCAAAACCAGATAGCAGGCATGTTTTAATGTTTTCGTACGATTTTTCTAATGTTCCTATTAACTACATGACTAAGGTGTTGAGCCCGAGGCTATATGGTACCATGTGCACACAGAGTCGACAAATACAGGTAAAGAAAAGCGTTGTTCGTCGACTTCACACCATTTTTCGGTCTAAGCTAGCAGGTAGTCCGGGAAGGGGTGTGACATTTGTAAATATAAACAATCAACATACACGATTCCGTACATTATATAAACGATAA

Protein sequence

MLISSYTKIIKRVPVELGSLFGMVSNTRFWLFDRPRGNRSDLHIAKLVQDCEGPKPDSRHVLMFSYDFSNVPINYMTKVLSPRLYGTMCTQSRQIQVKKSVVRRLHTIFRSKLAGSPGRGVTFVNINNQHTRFRTLYKR
Homology
[Close]
BLAST of MELO3C034512 vs. NCBI nr
Match: KAA0045362.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 6.8e-05
Identity = 28/32 (87.50%), Postives = 30/32 (93.75%), Query Frame = 0 

Query: 91  QSRQIQVKKSVVRRLHTIFRSKLAGSPGRGVT 123
           QSRQIQV+KSVVRRLH IFRSK+AGSPG GVT
Sbjct: 19  QSRQIQVQKSVVRRLHAIFRSKVAGSPGEGVT 50

[Close]
BLAST of MELO3C034512 vs. NCBI nr
Match: KAA0067851.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 6.8e-05
Identity = 28/32 (87.50%), Postives = 30/32 (93.75%), Query Frame = 0 

Query: 91  QSRQIQVKKSVVRRLHTIFRSKLAGSPGRGVT 123
           QSRQIQV+KSVVRRLH IFRSK+AGSPG GVT
Sbjct: 19  QSRQIQVQKSVVRRLHAIFRSKVAGSPGEGVT 50

[Close]
BLAST of MELO3C034512 vs. NCBI nr
Match: KAA0056677.1 (hypothetical protein E6C27_scaffold73G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 1.2e-04
Identity = 28/32 (87.50%), Postives = 30/32 (93.75%), Query Frame = 0 

Query: 91  QSRQIQVKKSVVRRLHTIFRSKLAGSPGRGVT 123
           QSRQIQV+KSVVRRLH IFRSK+AGSPG GVT
Sbjct: 19  QSRQIQVQKSVVRRLHAIFRSKVAGSPGGGVT 50

[Close]
BLAST of MELO3C034512 vs. NCBI nr
Match: KAA0046087.1 (hypothetical protein E6C27_scaffold157G00080 [Cucumis melo var. makuwa])

HSP 1 Score: 57.0 bits (136), Expect = 1.5e-04
Identity = 28/31 (90.32%), Postives = 29/31 (93.55%), Query Frame = 0 

Query: 91  QSRQIQVKKSVVRRLHTIFRSKLAGSPGRGV 122
           QSRQIQV+KSVVRRLH IFRSKLAGSPG GV
Sbjct: 19  QSRQIQVQKSVVRRLHAIFRSKLAGSPGAGV 49

[Close]
BLAST of MELO3C034512 vs. NCBI nr
Match: KAA0032947.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 57.0 bits (136), Expect = 1.5e-04
Identity = 27/32 (84.38%), Postives = 30/32 (93.75%), Query Frame = 0 

Query: 91  QSRQIQVKKSVVRRLHTIFRSKLAGSPGRGVT 123
           QSRQIQ++KSVVRRLH IFRSK+AGSPG GVT
Sbjct: 19  QSRQIQIQKSVVRRLHAIFRSKVAGSPGGGVT 50

[Close]
BLAST of MELO3C034512 vs. ExPASy TrEMBL
Match: A0A5A7TPR4 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G001410 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.3e-05
Identity = 28/32 (87.50%), Postives = 30/32 (93.75%), Query Frame = 0 

Query: 91  QSRQIQVKKSVVRRLHTIFRSKLAGSPGRGVT 123
           QSRQIQV+KSVVRRLH IFRSK+AGSPG GVT
Sbjct: 19  QSRQIQVQKSVVRRLHAIFRSKVAGSPGEGVT 50

[Close]
BLAST of MELO3C034512 vs. ExPASy TrEMBL
Match: A0A5A7VQG7 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2484G00610 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.3e-05
Identity = 28/32 (87.50%), Postives = 30/32 (93.75%), Query Frame = 0 

Query: 91  QSRQIQVKKSVVRRLHTIFRSKLAGSPGRGVT 123
           QSRQIQV+KSVVRRLH IFRSK+AGSPG GVT
Sbjct: 19  QSRQIQVQKSVVRRLHAIFRSKVAGSPGEGVT 50

[Close]
BLAST of MELO3C034512 vs. ExPASy TrEMBL
Match: A0A5A7UPX3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold73G00010 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 5.6e-05
Identity = 28/32 (87.50%), Postives = 30/32 (93.75%), Query Frame = 0 

Query: 91  QSRQIQVKKSVVRRLHTIFRSKLAGSPGRGVT 123
           QSRQIQV+KSVVRRLH IFRSK+AGSPG GVT
Sbjct: 19  QSRQIQVQKSVVRRLHAIFRSKVAGSPGGGVT 50

[Close]
BLAST of MELO3C034512 vs. ExPASy TrEMBL
Match: A0A5A7SUD6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold269G00210 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 7.3e-05
Identity = 27/32 (84.38%), Postives = 30/32 (93.75%), Query Frame = 0 

Query: 91  QSRQIQVKKSVVRRLHTIFRSKLAGSPGRGVT 123
           QSRQIQ++KSVVRRLH IFRSK+AGSPG GVT
Sbjct: 19  QSRQIQIQKSVVRRLHAIFRSKVAGSPGGGVT 50

[Close]
BLAST of MELO3C034512 vs. ExPASy TrEMBL
Match: A0A5A7TW18 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold157G00080 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 7.3e-05
Identity = 28/31 (90.32%), Postives = 29/31 (93.55%), Query Frame = 0 

Query: 91  QSRQIQVKKSVVRRLHTIFRSKLAGSPGRGV 122
           QSRQIQV+KSVVRRLH IFRSKLAGSPG GV
Sbjct: 19  QSRQIQVQKSVVRRLHAIFRSKLAGSPGAGV 49

The following BLAST results are available for this feature:
BLAST of MELO3C034512 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0045362.16.8e-0587.50putative mitochondrial protein [Cucumis melo var. makuwa][more]
KAA0067851.16.8e-0587.50Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa][more]
KAA0056677.11.2e-0487.50hypothetical protein E6C27_scaffold73G00010 [Cucumis melo var. makuwa][more]
KAA0046087.11.5e-0490.32hypothetical protein E6C27_scaffold157G00080 [Cucumis melo var. makuwa][more]
KAA0032947.11.5e-0484.38reverse transcriptase [Cucumis melo var. makuwa][more]
BLAST of MELO3C034512 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C034512 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TPR43.3e-0587.50Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A5A7VQG73.3e-0587.50Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7UPX35.6e-0587.50Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7SUD67.3e-0584.38Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold26... [more]
A0A5A7TW187.3e-0590.32Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of MELO3C034512 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C034512.1MELO3C034512.1mRNA