MELO3C029312 (gene) Melon (DHL92) v4

Overview
NameMELO3C029312
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionCharged multivesicular body protein 7 isoform X1
Locationchr08: 28058196 .. 28058597 (+)
RNA-Seq ExpressionMELO3C029312
SyntenyMELO3C029312
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCTGTCGTCGCCACTGCCTCTCTTCTCTCCATTGAGATCTTCGGCAACAATCTCCCTCCGTTCGTCGAAGCCGCCACCGTCACCTTAATTCTTCGTCAAGTTTCTGTTCGCCATTAGCCCGAGCCGCTCCCCTTTCTGTCAGCACCATCTCCTCTACGTCGCGACGTCCGAATCTGAAGCGAGTGGATTGTGTCTGCTCCAATCGGTGTTTGTCCATGAAGCTCCGACCGTCGTTGTCGCATCTCCACGAACCCAGCCGCTGCCGTTACGATCTCCCATTCGCATGGAGCTTGTTGCACCATCCATCCTTCTCCGTAGCACGCTACCGCACCCGGCATGCTCTCCTCGTAGTTGAAGAAGCCTCCATCCTCGAGCAATCATGTCCCAAGTGTGGGTGCATAG

mRNA sequence

GCTGTCGTCGCCACTGCCTCTCTTCTCTCCATTGAGATCTTCGGCAACAATCTCCCTCCGTTCGTCGAAGCCGCCACCGTCACCTTAATTCTTCGTCAAGTTTCTGTCGCGACGTCCGAATCTGAAGCGAGTGGATTGTGTCTGCTCCAATCGGTGTTTGTCCATGAAGCTCCGACCGTCGTTGTCGCATCTCCACGAACCCAGCCGCTGCCGTTACGATCTCCCATTCGCATGGAGCTTGTTGCACCATCCATCCTTCTCCGTAGCACGCTACCGCACCCGGCATGCTCTCCTCGTAGTTGAAGAAGCCTCCATCCTCGAGCAATCATGTCCCAAGTGTGGGTGCATAG

Coding sequence (CDS)

GCTGTCGTCGCCACTGCCTCTCTTCTCTCCATTGAGATCTTCGGCAACAATCTCCCTCCGTTCGTCGAAGCCGCCACCGTCACCTTAATTCTTCGTCAAGTTTCTGTCGCGACGTCCGAATCTGAAGCGAGTGGATTGTGTCTGCTCCAATCGGTGTTTGTCCATGAAGCTCCGACCGTCGTTGTCGCATCTCCACGAACCCAGCCGCTGCCGTTACGATCTCCCATTCGCATGGAGCTTGTTGCACCATCCATCCTTCTCCGTAGCACGCTACCGCACCCGGCATGCTCTCCTCGTAGTTGA

Protein sequence

AVVATASLLSIEIFGNNLPPFVEAATVTLILRQVSVATSESEASGLCLLQSVFVHEAPTVVVASPRTQPLPLRSPIRMELVAPSILLRSTLPHPACSPRS
Homology
BLAST of MELO3C029312 vs. NCBI nr
Match: KAA0062299.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 86.3 bits (212), Expect = 1.7e-13
Identity = 46/58 (79.31%), Postives = 49/58 (84.48%), Query Frame = 0

Query: 36   VATSESEASGLCLLQSVFVHEAPTVVVASPRTQPLPLRSPIRMELVAPSILLRSTLPH 94
            +ATSESE SGLCLLQ VF+HEA  VVV SPRT+P P RSPI MELVAPSILLRSTL H
Sbjct: 965  IATSESEVSGLCLLQPVFIHEASIVVVTSPRTKPPPSRSPICMELVAPSILLRSTLLH 1022

BLAST of MELO3C029312 vs. NCBI nr
Match: TYK03645.1 (charged multivesicular body protein 7 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 2.2e-13
Identity = 48/75 (64.00%), Postives = 58/75 (77.33%), Query Frame = 0

Query: 23  EAATVTLILRQVS----VATSESEASGLCLLQSVFVHEAPTVVVASPRTQPLPLRSPIRM 82
           +AAT+  +   VS    +A    +ASGLCLLQ +FV+E PTVV+ SPRTQP+P RSPIRM
Sbjct: 84  QAATLRAVPLFVSHFLCIAMFGFKASGLCLLQPMFVYEVPTVVLTSPRTQPMPSRSPIRM 143

Query: 83  ELVAPSILLRSTLPH 94
           EL+APSILLRSTLPH
Sbjct: 144 ELIAPSILLRSTLPH 158

BLAST of MELO3C029312 vs. NCBI nr
Match: KAA0050041.1 (charged multivesicular body protein 7 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 83.2 bits (204), Expect = 1.4e-12
Identity = 46/75 (61.33%), Postives = 57/75 (76.00%), Query Frame = 0

Query: 23  EAATVTLILRQVS----VATSESEASGLCLLQSVFVHEAPTVVVASPRTQPLPLRSPIRM 82
           +AAT+  +   VS    +A    +ASGLCLLQ +FV+E+PTVV+  PRTQP+  RSPIRM
Sbjct: 84  QAATLRAVPLSVSHLLCIAMFRFKASGLCLLQPMFVYESPTVVLTPPRTQPMSSRSPIRM 143

Query: 83  ELVAPSILLRSTLPH 94
           EL+APSILLRSTLPH
Sbjct: 144 ELIAPSILLRSTLPH 158

BLAST of MELO3C029312 vs. NCBI nr
Match: KAA0059932.1 (GPI mannosyltransferase 1-like isoform X1 [Cucumis melo var. makuwa] >TYK24878.1 GPI mannosyltransferase 1-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 2.0e-11
Identity = 44/58 (75.86%), Postives = 47/58 (81.03%), Query Frame = 0

Query: 36  VATSESEASGLCLLQSVFVHEAPTVVVASPRTQPLPLRSPIRMELVAPSILLRSTLPH 94
           V T  S+ASGLCLLQ +FVHEA T VVASPRTQ  P RSPIRME+VAPSILL STL H
Sbjct: 242 VGTFGSKASGLCLLQPMFVHEASTAVVASPRTQLPPSRSPIRMEIVAPSILLCSTLSH 299

BLAST of MELO3C029312 vs. ExPASy TrEMBL
Match: A0A5A7V9C3 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00450 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 8.1e-14
Identity = 46/58 (79.31%), Postives = 49/58 (84.48%), Query Frame = 0

Query: 36   VATSESEASGLCLLQSVFVHEAPTVVVASPRTQPLPLRSPIRMELVAPSILLRSTLPH 94
            +ATSESE SGLCLLQ VF+HEA  VVV SPRT+P P RSPI MELVAPSILLRSTL H
Sbjct: 965  IATSESEVSGLCLLQPVFIHEASIVVVTSPRTKPPPSRSPICMELVAPSILLRSTLLH 1022

BLAST of MELO3C029312 vs. ExPASy TrEMBL
Match: A0A5D3BX22 (Charged multivesicular body protein 7 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00750 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.1e-13
Identity = 48/75 (64.00%), Postives = 58/75 (77.33%), Query Frame = 0

Query: 23  EAATVTLILRQVS----VATSESEASGLCLLQSVFVHEAPTVVVASPRTQPLPLRSPIRM 82
           +AAT+  +   VS    +A    +ASGLCLLQ +FV+E PTVV+ SPRTQP+P RSPIRM
Sbjct: 84  QAATLRAVPLFVSHFLCIAMFGFKASGLCLLQPMFVYEVPTVVLTSPRTQPMPSRSPIRM 143

Query: 83  ELVAPSILLRSTLPH 94
           EL+APSILLRSTLPH
Sbjct: 144 ELIAPSILLRSTLPH 158

BLAST of MELO3C029312 vs. ExPASy TrEMBL
Match: A0A5A7U8W2 (Charged multivesicular body protein 7 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00170 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 6.8e-13
Identity = 46/75 (61.33%), Postives = 57/75 (76.00%), Query Frame = 0

Query: 23  EAATVTLILRQVS----VATSESEASGLCLLQSVFVHEAPTVVVASPRTQPLPLRSPIRM 82
           +AAT+  +   VS    +A    +ASGLCLLQ +FV+E+PTVV+  PRTQP+  RSPIRM
Sbjct: 84  QAATLRAVPLSVSHLLCIAMFRFKASGLCLLQPMFVYESPTVVLTPPRTQPMSSRSPIRM 143

Query: 83  ELVAPSILLRSTLPH 94
           EL+APSILLRSTLPH
Sbjct: 144 ELIAPSILLRSTLPH 158

BLAST of MELO3C029312 vs. ExPASy TrEMBL
Match: A0A5D3DMR1 (GPI mannosyltransferase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G001490 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 9.9e-12
Identity = 44/58 (75.86%), Postives = 47/58 (81.03%), Query Frame = 0

Query: 36  VATSESEASGLCLLQSVFVHEAPTVVVASPRTQPLPLRSPIRMELVAPSILLRSTLPH 94
           V T  S+ASGLCLLQ +FVHEA T VVASPRTQ  P RSPIRME+VAPSILL STL H
Sbjct: 242 VGTFGSKASGLCLLQPMFVHEASTAVVASPRTQLPPSRSPIRMEIVAPSILLCSTLSH 299

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0062299.11.7e-1379.31pol protein [Cucumis melo var. makuwa][more]
TYK03645.12.2e-1364.00charged multivesicular body protein 7 isoform X1 [Cucumis melo var. makuwa][more]
KAA0050041.11.4e-1261.33charged multivesicular body protein 7 isoform X1 [Cucumis melo var. makuwa][more]
KAA0059932.12.0e-1175.86GPI mannosyltransferase 1-like isoform X1 [Cucumis melo var. makuwa] >TYK24878.1... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7V9C38.1e-1479.31Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00450 PE... [more]
A0A5D3BX221.1e-1364.00Charged multivesicular body protein 7 isoform X1 OS=Cucumis melo var. makuwa OX=... [more]
A0A5A7U8W26.8e-1361.33Charged multivesicular body protein 7 isoform X1 OS=Cucumis melo var. makuwa OX=... [more]
A0A5D3DMR19.9e-1275.86GPI mannosyltransferase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C029312.1MELO3C029312.1mRNA