MELO3C033321 (gene) Melon (DHL92) v4

Overview
NameMELO3C033321
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionS locus-related glycoprotein 1 binding pollen coat
Locationchr08: 18147910 .. 18152699 (+)
RNA-Seq ExpressionMELO3C033321
SyntenyMELO3C033321
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACTTAATAAAACAATAGTTTCATAATTTGCATATCTTAAGAATATGGCTTCTTCCCGTATCATCTGCTTTGCTCTTATATTTGCAGGTTCCTTTCCTTTAATTTCTTCTACAAATACAATATTATCATGTGTTACAAAATCAAAAAATCATGAGACATATTAGATTGCTAATTTGTATAGTTATGTTTTTATGTTTTTGTATAGTTGCATTGATCTTAGTGCCTCAAGATGTCTCAGCTGCCAAAAGATGTCAAGACGTTTTGTATAACACTGGGTGCTCTCTCAATGATTGTGGGAAGAAATGTTGGGAGAAGCATCATACTATTTCACATCAATGCATTCCAACTAATCCTTCTCAAACCATATATGCGTGTTATTGTTTCTTTGATTGTGGTGATCAAAAGAATTGATTTGCATGCTGACATCTCCTAATTTAATGTAATGTACTTTGTCACTTAAACTTACAAATAATATCACACATCTTCCCTAATCTTTGACTGTGCTTCAACAATTTAATGTCTTGAATACAAGATTCCATGAACTAAAATTCTTTCAACATTATTGTCATGGATTAGCTTTCCTATGAACAACTTCAAAATTTACGACATTGTAGCAACCCTAATATTGTCGTTCCAAACTAATTACGAAACCCCTCCAACTATAAATATGTCGCAACCACATTGTTTTTAAGTATCTTCGATCAACTAAATTTTTGTAAAATAACCTATAATGTCGAATAAGAATAAAAAAATGATACAAAAATGACGGAGAAAAATTTGTCATTGTCAACAAACTTTCTTCAAATAAAGTAAAGTTTATAAATCAATGAACTCAACAACTATTAATTACTACTAAAAGATTGCAATAGCAATAAGCCCGAGGTCGAATCAGATGAAGCTAAAGATAGTATTTCTCAATGTAAAATTAGCCTATCAAAAGAAATAAAAATGGGGGGTTTTGTTTTGTTGACAATAAAATTAAATTGCATGAAATTTATGAAGTGCAAAAAAGTAGGATAGATGGGTAAGTAATCAAGATATCCTGGCTTAGACAAATGGGGTCACTCAATGGCAGTAAGATCATCTAAAATTATTACCTATAACCTAAATACTTTGTTTATGCATATTCCAATTGATAGGAACCGTGATTAATTATTATAAGTATCAAGTTAGCTAGAATGATAAGTCTAACCCACAGTAGACTCGCATTAAGTTCTTAGGTGATGCTAGGATGAGCAGTTAGCTTCCATCCTCAAACCAAGTCTCACCTTTTGCTTTTAAAGGAAGCATTTACTAATCTTTTATTTCTTTGGAATTTTTCGTTTTCTTTTTAGGTAGCGTTTTTTTTTTGTATGGGCTCTTCCTATTCTATGATTCAGCTAGTAAACTTAATAGGAAGGCTGGACTTTCAAGGTACAACAAATGAATTTAAGCTGAGTACTCTTTTCTAAAGGATCATAGGTTTATTGTGACACTTAGCAAAGAATTAAAAAATGAATGAGATAATAAGAGAAAAAGTTTTTAAAATGACATGAAAACTGTAAATGCTTCTTTTCTTAATTAAAATCAAGCAAGATAAGCTAGCACGAGTATGTCATCGACTATCATAATAAATCACCAAGCAAACAAGAAAGAACATTCATGCATTCGTTTACTGCACAGCATTCGTTCAAATGATAGTCTTTTCCAATTTTTCTTCTCCTTCATCCAACCGGCCGCACCCGCACGTTTCCGTCTTCCGCCCCATTTTCGATCCTCCTCTCTGTCTCGCGATACCGACCGTCTCGACCTTCTACAAAAAAAAAAAACGAACGTCGCCCACCGTTGTGTGCTCCGATCCGCGTTGCGTCACAGTGGTCACCTCTGTATGGCACTGTGAAGTGCAACGAAGCTTGGTAGAGCAAAACCGATCGTCAAACTTCTCCAAGCTGCGAAACGCCACTACCGTCAAGCGCCCGAAGACCCGTCGCTCGGGGTTGCCCCGACTTCAAGCTGACCCGACCCGAGCCACCCTCTTTCAATCTCACCCGCAACTCGAGCCGCGAATCCAAGTCGTGCCCGCGCCGCGAAGCCGAGCCGAGTCGAGCCAAGGCCTGAGCCGAGCTGAGTCGAGCCGAGGACTGAGCCGGGCCACAAGCCGAGTCAAGTCGAGCTGAGCCACGAGCCAGGAGCTGCGAGCCGCGAGTCGAGAGTCCAGCTGAGCTGAGCCACGAGCTGCGAGCTGCGAGTCGAGTCGAACCACCTATGCCATTTTCTTTCCACTTCGGGTCATGGTGAACCTTCGGTAAGAATCATTTAGTGAGTTTCCTAATGTTGCGATAACCGATTCAAGTTTAGATATTGGATTAAGACATGGTCCTACCTTTTGTTCCTTGAAGGTATTAGGGAGTTGACGCTCAAGTTCTGGGGTTCCACGGCAGGCTTAATTGGAGATAGCTCTCCTTTACTCGGGTAAGTCAACGGATGTTGCTTAGGACCATTTAAAAATTACTTTTACTAGTGTCATCGTTTAAACCCTTCTAATTTCATTTAGGTGGATTCGTTGGGCGTGGACTCGATCAAGAGGCATAGCCAAGTTACAGGTAAGGGATTTCTTACTACTGGACCTCGGATTGAGGCTGGAAACATAGTAACCCACATGGGGATTATACGCTAGTAACTGTATTGAGTGGATTGACGCATGTTAACACATATCACTTATATGCTCTTGACTGATTAAAGGTAACGTGACCGTTAGTTGTAGCTTATGTGCTATCATATGTAATGAGTTGTTTACGAATAGACACCGATGCCCAGATGTTCTGTGTATTGTAGTTATGTTGGTGGGCTACGTTGTGAACTGGAATAGTATGTCGATGGACTATAAAGTCTTAAGGTTATGTAAGTGGAAGTGTGTTGTTGGGATATTGGTTATGGAGTTATGTCGTGGAAGGATTAAGAGTCCGAGAACCTCTCGTGTACATTGAGTATACGCCATTGAACTGTGCTATGAACTGATTATTATTGTCAGATATAATGTGGGCATTACGAATAACGTAGATTACCTGGGGATACACTAGAGTTTGAACTGAGTCGAAGTATCGTCAGATAACTTTACAAAGTGAAGATTTGACTGATTGACTGGATTTAAATAAATGTCACAATGATGTGTGCATTGGATATGCATATAGCAACTGAGGAGACAGTTGTTTAAACCTATATTGTCTGACTGGCTAAGCCTATGACTGAACTGTCAGTTTGAACGTTATCGGAGTGTGACTGTTGTAGATTATTTAGTATAAGTTGTGGGGTAACGGTTAGCTTCATCTATGGGGTAGTGTGCCTTACTGATATGTGAATTCTTCGGGATCTCTAGACTGATATGTGAAGCCTTTGGGATCACTAGACTGATACGTGCATCCTTCAGGATCACGAGACTGATGTGTGCGTTCTACGGAACCACTAGACTGTTTATGTAGGGTACGCCTGAATAGGAAGTTAACTGTTATTCCCTAACGGGCCCAGTAGTGGGTCCCTTACTGGGTATATCTTATACTCACCCTTTTTCCTCTTTAACTTTTCAGGTAAGGGTACAGCGAGGGGCAGACCGACGAAGGGCAAGAAGAATGCGTGAAGGCCATATGGATGCGTCTGGTTTTCTTTATGCTTCCGCTGATGTATTTTATTACTCGTTATTTTCATTGTCAGATCGATTCATAGTTAGAATATTTGGTTTGTGGTTTTGTGTTTGATGATTTGAGTACTGTATTTTAGAACTCTCGTGAATGTGATTTAAAATAGGGCCCAAAACTGCTTTTGTGATATTTTAAACATTTGTAATGAATCGTAACCGATTTTTTATGAGCTTGCGTGTTTTACTGTCGAGTCTTAGTACTACGTAGTGACCTCAGCTTAGTCCGGAAGGTTGGGTCGTTACACATGCTCAATGGAAAAGATTGAAATTCTACTCTAATTACAACATTATATAGTAAGGGGACAAAATTAGTTAACGAATGTTGATTTGCTCGGTCTAAAAGGGTTTAGCTAGTTAATCTTGGATTGTTGGAGTCCATGATCTATAGGTCCATTAGCTTTTCTTGCTAGCTCATATGGAATTAACTTGGACCAATATGTTGGACTAATTCGAATTGGTCGAATTAGGTACAGAGAAAGAAACGGACGAATATATGCGATATAGTCATCGGTTGTAGAGCTTTATCTTTAAATGTGATTTAAATATTAAAAATATGAATACATATTCGTTGTAATACATTAGCTAAAGCAACATAGTCATCTTAATAGACTACCTATAATACTTCCGTACAAGCCTTCATCCACCTTTTTACCCAAACCATCCTTTAAAACCTTGAAATGAGTTGCAATAGAAGTTCTCTTGGCCTTGGCTCGATCAAGAGGAAATTTATTTATTAAAATTTTAAGCATATTTTTCTTGAGGAAGAAAAATTTTGGATTCATGTTAATGAATTTGAAACCCAAGAAATAAGATTAACTTTCCTACCATACTCATTTCAAACTCTATCTTCACTATCACGATGAATGTTAATATCATAGAATCTGGTTGCCCTTATAAAGATAATGTCATCCACGTATACTTGTGCAACTAAAAACTCATGATAATATTTCTTGATAAACATTGTTTCATCACTGCCTCCTTGAGTAAAACCTTGTTTTAGAATAAATACTAACAATCTTTCATACCAAGCCCAAGGGGCCTACTTGAGACCTTATAATGCCGTGTGTAATTTATAAACATGATTTGGATTGACAAGATCTTCAAATCCTTTCGGTTGA

mRNA sequence

ACTTAATAAAACAATAGTTTCATAATTTGCATATCTTAAGAATATGGCTTCTTCCCGTATCATCTGCTTTGCTCTTATATTTGCAGTTGCATTGATCTTAGTGCCTCAAGATGTCTCAGCTGCCAAAAGATGTCAAGACGTTTTGTATAACACTGGGTGCTCTCTCAATGATTGTGGGAAGAAATGTTGGGAGAAGCATCATACTATTTCACATCAATGCATTCCAACTAATCCTTCTCAAACCATATATGCGTGTAGCGTTTTTTTTTTGTATGGGCTCTTCCTATTCTATGATTCAGCTAGTAAACTTAATAGGAAGGCTGGACTTTCAAGGATTTGGATTGACAAGATCTTCAAATCCTTTCGGTTGA

Coding sequence (CDS)

ATGGCTTCTTCCCGTATCATCTGCTTTGCTCTTATATTTGCAGTTGCATTGATCTTAGTGCCTCAAGATGTCTCAGCTGCCAAAAGATGTCAAGACGTTTTGTATAACACTGGGTGCTCTCTCAATGATTGTGGGAAGAAATGTTGGGAGAAGCATCATACTATTTCACATCAATGCATTCCAACTAATCCTTCTCAAACCATATATGCGTGTAGCGTTTTTTTTTTGTATGGGCTCTTCCTATTCTATGATTCAGCTAGTAAACTTAATAGGAAGGCTGGACTTTCAAGGATTTGGATTGACAAGATCTTCAAATCCTTTCGGTTG

Protein sequence

MASSRIICFALIFAVALILVPQDVSAAKRCQDVLYNTGCSLNDCGKKCWEKHHTISHQCIPTNPSQTIYACSVFFLYGLFLFYDSASKLNRKAGLSRIWIDKIFKSFRL
Homology
[Close]
BLAST of MELO3C033321 vs. NCBI nr
Match: KAE8649772.1 (hypothetical protein Csa_012405, partial [Cucumis sativus])

HSP 1 Score: 122.5 bits (306), Expect = 2.3e-24
Identity = 53/60 (88.33%), Postives = 56/60 (93.33%), Query Frame = 0 

Query: 16 ALILVPQDVSAAKRCQDVLYNTGCSLNDCGKKCWEKHHTISHQCIPTNPSQTIYACSVFF 75
          AL+L  QDVSAA+RCQDVLYNTGC+LNDCGKKCWEKHHTISHQCIPTNPSQTIYAC  FF
Sbjct: 1  ALLLASQDVSAAQRCQDVLYNTGCNLNDCGKKCWEKHHTISHQCIPTNPSQTIYACYCFF 60

[Close]
BLAST of MELO3C033321 vs. NCBI nr
Match: KAA0042348.1 (S locus-related glycoprotein 1 binding pollen coat [Cucumis melo var. makuwa] >TYK15471.1 S locus-related glycoprotein 1 binding pollen coat [Cucumis melo var. makuwa])

HSP 1 Score: 110.2 bits (274), Expect = 1.2e-20
Identity = 50/76 (65.79%), Postives = 58/76 (76.32%), Query Frame = 0 

Query: 3  SSRIICFALIFAVALILVPQDVSAAKRCQDVLYNTGCSLNDCGKKCWEKHHTISHQCIPT 62
          SS I+  AL  AVA+ILVPQ   A +RCQD LY+TGC+L DCG+KCWEKHH  SHQCIPT
Sbjct: 6  SSWILTIALTIAVAMILVPQGALAVRRCQDKLYDTGCTLADCGQKCWEKHHDASHQCIPT 65

Query: 63 NPSQTIYACSVFFLYG 79
          +P QTIYAC  F+  G
Sbjct: 66 DPGQTIYACYCFYNCG 81

[Close]
BLAST of MELO3C033321 vs. NCBI nr
Match: KGN64987.1 (hypothetical protein Csa_022748 [Cucumis sativus])

HSP 1 Score: 104.0 bits (258), Expect = 8.4e-19
Identity = 48/76 (63.16%), Postives = 57/76 (75.00%), Query Frame = 0 

Query: 3  SSRIICFALIFAVALILVPQDVSAAKRCQDVLYNTGCSLNDCGKKCWEKHHTISHQCIPT 62
          SS I+   LI AVA+I +PQ   AA RCQD+LYN+GC+L DCG+KCWEKHH  S QCIPT
Sbjct: 6  SSWILTIVLIIAVAMISIPQGALAA-RCQDILYNSGCTLADCGQKCWEKHHEASRQCIPT 65

Query: 63 NPSQTIYACSVFFLYG 79
          +P QTIYAC  F+  G
Sbjct: 66 DPDQTIYACYCFYTCG 80

[Close]
BLAST of MELO3C033321 vs. NCBI nr
Match: BBH07492.1 (hypothetical protein Prudu_019451 [Prunus dulcis])

HSP 1 Score: 69.3 bits (168), Expect = 2.3e-08
Identity = 32/56 (57.14%), Postives = 39/56 (69.64%), Query Frame = 0 

Query: 20  VPQDVSAAKRCQDVLYNTGCSLNDCGKKCWEKHHTISHQCIPTNPSQTIYACSVFF 76
           VPQ   A KRC + LY +GC+L+DCGKKCWEKHH   ++CI  N +QT YAC   F
Sbjct: 57  VPQ-AYAQKRCDEQLYASGCTLSDCGKKCWEKHHDPGYKCI-ANVAQTDYACYCMF 110

[Close]
BLAST of MELO3C033321 vs. NCBI nr
Match: OMO95288.1 (S locus-related glycoprotein 1 binding pollen coat [Corchorus olitorius])

HSP 1 Score: 68.9 bits (167), Expect = 3.0e-08
Identity = 32/68 (47.06%), Postives = 44/68 (64.71%), Query Frame = 0 

Query: 6  IICFALIFAVALILVP--QDVSAAKRCQDVLYNTGCSLNDCGKKCWEKHHTISHQCIPTN 65
          ++   L+F+V  + +P      A KRCQ +LY  GC+L DC KKC++K  +I  QCIPTN
Sbjct: 10 LLLIVLVFSVISMAMPVAAQADAQKRCQKILYPKGCTLMDCRKKCFQKFGSIGGQCIPTN 69

Query: 66 PSQTIYAC 72
           +QTIY C
Sbjct: 70 QAQTIYEC 77

[Close]
BLAST of MELO3C033321 vs. ExPASy TrEMBL
Match: A0A0A0L2R3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G576870 PE=3 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.6e-31
Identity = 66/75 (88.00%), Postives = 70/75 (93.33%), Query Frame = 0 

Query: 1  MASSRIICFALIFAVALILVPQDVSAAKRCQDVLYNTGCSLNDCGKKCWEKHHTISHQCI 60
          M SSRIICFALIFAVAL+L  QDVSAA+RCQDVLYNTGC+LNDCGKKCWEKHHT+SHQCI
Sbjct: 1  MDSSRIICFALIFAVALLLASQDVSAAQRCQDVLYNTGCNLNDCGKKCWEKHHTVSHQCI 60

Query: 61 PTNPSQTIYACSVFF 76
          PTNPSQTIYAC  FF
Sbjct: 61 PTNPSQTIYACYCFF 75

[Close]
BLAST of MELO3C033321 vs. ExPASy TrEMBL
Match: A0A5A7THQ7 (S locus-related glycoprotein 1 binding pollen coat OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00450 PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 5.7e-21
Identity = 50/76 (65.79%), Postives = 58/76 (76.32%), Query Frame = 0 

Query: 3  SSRIICFALIFAVALILVPQDVSAAKRCQDVLYNTGCSLNDCGKKCWEKHHTISHQCIPT 62
          SS I+  AL  AVA+ILVPQ   A +RCQD LY+TGC+L DCG+KCWEKHH  SHQCIPT
Sbjct: 6  SSWILTIALTIAVAMILVPQGALAVRRCQDKLYDTGCTLADCGQKCWEKHHDASHQCIPT 65

Query: 63 NPSQTIYACSVFFLYG 79
          +P QTIYAC  F+  G
Sbjct: 66 DPGQTIYACYCFYNCG 81

[Close]
BLAST of MELO3C033321 vs. ExPASy TrEMBL
Match: A0A0A0LVZ5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G172580 PE=3 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 4.1e-19
Identity = 48/76 (63.16%), Postives = 57/76 (75.00%), Query Frame = 0 

Query: 3  SSRIICFALIFAVALILVPQDVSAAKRCQDVLYNTGCSLNDCGKKCWEKHHTISHQCIPT 62
          SS I+   LI AVA+I +PQ   AA RCQD+LYN+GC+L DCG+KCWEKHH  S QCIPT
Sbjct: 6  SSWILTIVLIIAVAMISIPQGALAA-RCQDILYNSGCTLADCGQKCWEKHHEASRQCIPT 65

Query: 63 NPSQTIYACSVFFLYG 79
          +P QTIYAC  F+  G
Sbjct: 66 DPDQTIYACYCFYTCG 80

[Close]
BLAST of MELO3C033321 vs. ExPASy TrEMBL
Match: A0A0A0KYP7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G507400 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.7e-09
Identity = 36/75 (48.00%), Postives = 51/75 (68.00%), Query Frame = 0 

Query: 1  MASSRIICFALIFAVALILVPQDVSAAKRCQDVLYNTGCSLNDCGKKCWEKHHTISHQCI 60
          ++S R+    +IFAV++ILVPQ  SA K CQD LY  GC  ++CG+KC + HH  + +CI
Sbjct: 21 LSSFRVAIIIVIFAVSMILVPQGTSALK-CQDRLYVGGCIQHECGQKCSQLHHGGTSKCI 80

Query: 61 PTNPSQTIYACSVFF 76
           T+P+ T YAC  F+
Sbjct: 81 STDPTFTKYACYCFY 94

[Close]
BLAST of MELO3C033321 vs. ExPASy TrEMBL
Match: A0A4Y1RT05 (Uncharacterized protein OS=Prunus dulcis OX=3755 GN=Prudu_019451 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.1e-08
Identity = 32/56 (57.14%), Postives = 39/56 (69.64%), Query Frame = 0 

Query: 20  VPQDVSAAKRCQDVLYNTGCSLNDCGKKCWEKHHTISHQCIPTNPSQTIYACSVFF 76
           VPQ   A KRC + LY +GC+L+DCGKKCWEKHH   ++CI  N +QT YAC   F
Sbjct: 57  VPQ-AYAQKRCDEQLYASGCTLSDCGKKCWEKHHDPGYKCI-ANVAQTDYACYCMF 110

The following BLAST results are available for this feature:
BLAST of MELO3C033321 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8649772.12.3e-2488.33hypothetical protein Csa_012405, partial [Cucumis sativus][more]
KAA0042348.11.2e-2065.79S locus-related glycoprotein 1 binding pollen coat [Cucumis melo var. makuwa] >T... [more]
KGN64987.18.4e-1963.16hypothetical protein Csa_022748 [Cucumis sativus][more]
BBH07492.12.3e-0857.14hypothetical protein Prudu_019451 [Prunus dulcis][more]
OMO95288.13.0e-0847.06S locus-related glycoprotein 1 binding pollen coat [Corchorus olitorius][more]
BLAST of MELO3C033321 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C033321 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L2R31.6e-3188.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G576870 PE=3 SV=1[more]
A0A5A7THQ75.7e-2165.79S locus-related glycoprotein 1 binding pollen coat OS=Cucumis melo var. makuwa O... [more]
A0A0A0LVZ54.1e-1963.16Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G172580 PE=3 SV=1[more]
A0A0A0KYP71.7e-0948.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G507400 PE=3 SV=1[more]
A0A4Y1RT051.1e-0857.14Uncharacterized protein OS=Prunus dulcis OX=3755 GN=Prudu_019451 PE=3 SV=1[more]
BLAST of MELO3C033321 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033321.1MELO3C033321.1mRNA